Nucleic Acids Flashcards

1
Q

Fred Griffith

A

discovered transformation

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2
Q

pneumococci R strain

A

no capsule, not pathogenic

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3
Q

pneumococci S strain

A

pathogenic, encapsulated

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4
Q

transformation of pneumococci

A

combined harmless R bacteria with heat-killed S bacteria –> R turned to S and caused pneumonia

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5
Q

Avery, McCarty, MacLeod

A

identified that DNA was the transforming principle

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6
Q

Hershey and Chase

A

used bacteriophages to determine if genetic information was DNA or protein

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7
Q

Hershey and Chase experiment

A

labeled one batch of phage with S (in protein) and one with P (in DNA) –> bacteria infected with phage –> centrifugation –> P was found in bacteria but S was found in supernatant

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8
Q

DNA base pairing

A

A with T and C with G

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9
Q

Watson-Crick model of DNA

A

bases are on inside, phosphate backbone on outside; 3.4A between bases, 10.6A per turn

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10
Q

Meselson-Stahl

A

found out that DNA was semi-conservative

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11
Q

Meselson-Stahl experiment

A

grew E. coli for several generation with N15 as only nitrogen source –> shift to N14 –> isolate DNA at various times –> weigh by centrifugation

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12
Q

What are genes?

A

a discrete region of DNA that encodes functional RNA with coding and regulatory regions

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13
Q

central dogma violations

A

RNA viruses (RNA –> RNA), retroviruses (RNA –> DNA), non-protein genes (RNA –> function), epigenetics

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14
Q

roles of DNA

A

storage of genetic information and structure

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15
Q

roles of RNA

A

storage of genetic information, structure, transfer of information, information interpretation, enzymes, gene regulation

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16
Q

Watson-Crick model

A

helical molecule will give an X-ray diffraction pattern that forms an X –> Rosalind Franklin’s X-ray diffraction of DNA showed an X

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17
Q

Meselson-Stahl results

A

DNA has heavy banding at beginning –> first generation has halfway between heavy and light –> after two generation some are intermediate and some are light

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18
Q

DNA backbone

A

ribose sugar + phosphate

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19
Q
A

ribose, -OH at 2’

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20
Q
A

2-deoxyribose; no -OH at C2

21
Q

linkage between ribose sugar and phosphate

A

phosphodiester linkage

22
Q

purines

A

two rings, A and G

23
Q

pyrimidines

A

1 ring; T and C and U

24
Q
25
guanine
26
cytosine
27
thymine
28
uracil
29
nucleoside
DNA base + ribose sugar
30
nucleotide
DNA base + ribose sugar + phosphate group
31
DNA bases are _
planar and hydrophobic; hydrogen bonded to each other
32
A and T have _
2 hydrogen bonds
33
G and C have _
3 hydrogen bonds, higher melting point
34
usual DNA form
B form
35
electron microscopy
visualize DNA strand if coat it with a metal
36
spectroscopy of ssDNA vs dsDNA
dsDNA will have lower peak absorbance
37
ssDNA wavelength at peak absorbance
around 260nm
38
melting temperature of DNA
point where half DNA is melted; usually around 50-70 degrees celsius
39
What affects stability of double helix?
base stacking, H-bonding, salt interactions with phosphates to mask negative charge
40
restriction enzymes
cut palindromic sequences (read same forward and backward); used to make recombinant DNA
41
How does DNA keep from getting tangled?
supercoiling, topoisomerases, DNA binding proteins
42
topoisomerases
help control strain of supercoiling by changing conformation of DNA-linking number
43
topoisomerase I
one phosphodiester bond is broken, changing linking number by 1
44
gyrase (type II topo)
double strand break; linking number changes by -2
45
novobiocin
blocks binding of ATP to gyrase
46
nalidixic acid, ciprofloxacin
interfere with breakage and rejoining of DNA by gyrase and are used to treat UTIs
47
bleomycin
cervix and uterus, head and neck, testicle and penis, lymphoma
48
etoposide
testicle and lung cancers
49
chromatin
DNA + proteins