Nitrogen metabolism Flashcards
Phenylalanine hydrolase
- PAH
- Phenylalanine + tehtrahydrobiopeterin (BH4) (cofactor)–>Tyrosine + dihydroiopeterin (BH2)
Defect in PKU I (classic PKU)
PKU I
- defect in phenylalanine hydroxylase
- can’t convert phenylalanine to tyrosine (tyrosine becomes essential AA)
- decreased melanin synthesis (from tyrosine)–>decreased pigmentation of skin (phe–|tyrosinase)
- CNS symptoms: delay in milestones, low IQ (untreated, major IQ reduction in early development); Seizures @ high blood [phe]
- Phe metabolized to phenylpyruvate, phenylacetate, phenyllactate–>excrete in urine–>mousey odor
- blood [Phe] elevated
-IQ decreases after cessation of Phe free diet
Treatment:
- dietary restriction of Phe
- Sapropterin–>synthetic BH4 (mild or moderate forms of disease) (mutant enzyme with low cofactor affinity)
Sapropterin
synthetic tetrahydrobiopterin (BH4)
Maternal PKU syndrome
High Phe in mothers is tratogenic–>leads to birth defects
- microcephaly, mental retardation, congenital heart defects
- kid isn’t PKU + (ususally heterozygous)
PKU II
- malignant PKU
- deficiency of diydrobiopterin reductase (BH2/BH4) or BH2 synthesis
- more severe/worse prognosis than PKU I
- CNS symptoms worse–>decreased neurotransmitter synthesis (serotonin, dopamine, catecholamines)
- treatment: Phe restriction, dietary biopterin and precursors of neurotransmitters (blood/brain barrier limits efficacy)
- elevated Phe and metabolites
- phenylpyruvic acid in urine leads to mousey odor
dihydrobiopterin reductase
Dihydroiopterin (BH2)–>tetrahydrobiopterin (BH4)
deficient in PKU II
Homogentisic acid oxidase
Full name homogentisate 1,2-dioxygenase
homogentisic acid—> maleylacetoacetate
used in pathway from tyrosine to fumarate and acetoacetate
Alkaptonuria
- defect in homogentisate 1,2-dioxygenase
- homogentisic acid–>maleylacetoacetate
- ^ is a brown pigment
- relatively benign
- Ochronosis: homogentisic acid deposits in cartilage and connective tissue–>leads to severe arthritis
- homogentisic acid is excreted in urine–>brown color on standing (oxidation of homogentisic acid)
- dietary restriction of Phe and Tyr may reduce deposition
- bluish-black discoloration of sclera and auriculum)
Tyrosinosis
- Tyrosinemia type I
- deficinecy of fumarylacetoacetate hydrolase
- build up of fumaryl acetoacetate leads to kidney and liver damage
- severe usually fatal
- cabbage-like odor of urine
- attempt dietary restriction of Phe and Tyr (difficult b/c both essential and needed for neurotransmitter synthesis)
Fumarylacetoacetate Hydrolase
fumarylacetoacetate–>fumarate + acetoacetate
defective in Tyrosinemia Type I
Maple Syrup Urine Disease (MSUD)
- deficiency of branched chain α-ketoacid dehydrogenase (branched chain keto acid–>___acyl-CoA)
- rare
- symptoms develp @ 4-7 days
- presents with poor feeding, vomiting, poor weight gain, increasing lethargy
- neurological signs (alternating muscular hypotonia and hypertonia, seizures, encepalopathy)
- ketosis–>maple syrup odor
- coma and death in early infancy if untreated
- Treatment: dietary restriction of branched chain amino acids (leu, ile, val)–>all essential, difficult (improves neurological manifestations; dietary supplementation with TPP (vit B1 useful in some pts with low coenzyme affinity)
Branched chain α-ketoacid dehydrogenase
- Requires TPP
- deficiency causes MSUD
- branched chain keto acid–> corresponding acyl-CoA
- paralog of αKgDH, PDH
Methylmalonic Aciduria
- deficiency in Methylmalonyl-CoA Mutase
- elevated levels of methylmalonic acid (methylmalonic acidemia)
- metabolic acidosis
- Methylmalonic Aciduria
- neurological symptoms: seizures, encephalopathy
- some pts improve with B12 (cobalmin) supplementation–>those with reduced coenzyme affinity
Methylmalonyl-CoA Mutase
- methylmalonyl-CoA to succinyl-CoA
- reuqires vit B12 cofactor dervived cofactor-adenosylcobalamin
- deficiency causes methymalonic aciuria
Homocystinuria/Hyperhomocysteinemia
- group of disorders involving homocysteine metabolism–>commonly Cystathionine β-synthase
- homocysteine accumulates in connective tissue and disrupts the structure (forms disulfide bridges with collagen cys residues)
- dislocation of lens (ectopia lentis) after age 3 (and other ocular abnormalities)
- skeletal abnormalities (childhood osteoporosis)
- mental retardation
- premature arterial disease (lipid deposits–>atheromas; lipid oxidation and platelet aggregation–>fibrosis & calcification of atherosclerotic plaques)
- some pts respond to oral vit B6
- special diet
-Hyperhomocysteinemia is typically managed with vitamin B6, folic acid, and vitamin B12 supplementation. [3] Taurine supplementation also has been found to reduce homocysteine levels.[4] (http://en.wikipedia.org/wiki/Hyperhomocysteinemia)
Cystathionine β-synthase
- part of transulfuration pathway (methionine to cys)
- homocysteinine–>cystathionine
- requires PLP (vit B6)
Fate of homocysteine
- recycled to methionine (required THF and vit B12)
- sulfur transfered to serine by Cystathionine β-synthase in transulfuration rxn forming cysteine and a carbon skeleton (require B6=PLP), carbons–>Succinyl-CoA (needs B12)
Amino acid pool
- circulating free amino acids
- sources: dietary, tissue protein catabolism, synthesis of non-essential
Uses:
- Amnio acid catabolism: ammonia–>urea
- Carbon skeleton: glucose/lipid synthesis, oxidation in TCA (pyruvate)
- stynthesize nitrogen containing compounds: creatine, heme, neurotransmitters, purines, pyrimidines, etc
- build proteins
Essential Amino Acids
- Phenylalanine (F), Valine (V), Tryptophan (W), Threonine (T), Isolucine (I), Methionionine (M), Arginine* (R), Leucine (L), Lysine (K)
- Arg is essential only during high demand in childhood
The Whole Food Ladder Really Must Have Various Key Ingredients
Conditionally Essential AA
- Cysteine-when met is insufficient
- Arg-conditional during rapid growth when in high demand
- Tyrosine: Y and F can be interconverted, one is needed
Protein degredation pathways
- Lysosomal-extracellular or membrane proteins
- ubiquitin/proteasome-proteins made by the cell
Ubiquitin/Proteasome degredation
- used for oxidatively damaged, or denatured proteins
- PEST sequences-rich in pro, blu, ser, and the have short t1/2
Lysosome functions
- normal degredation fo some cellular components
- material from phagocytosis
- receptor mediated endocytosis (i.e.: LDL receptor)
- autophagy
- extracellular digestion: acrosome, inflammatory processes can cause inappropriate release of lysosomes from WBC’s (i.e.: gout)
Liver in N metabolism
- deamination (AA–>NH3 + carbon skeleton)
- NH3–>urea (urea cycle)
- carbon skeleton–>gluconeogenesis, TCA, ketogenesis, probably FA de novo synthesis
Kidney in N metabolsim
- excretes urea from liver in urine
- excrete NH3 as NH4+ (regulation of acid/base balance; source is gluatmine, glutaminase)
- excretes uric acid (end product of purine degradation), creatinine (end product of creatine degradation), nitrogenous non-protein substances
Cystinuria
- caused by decreased tubular reabsorption of cystein (and other dibasic aa’s ornitine, arg, lys)
- inherited deficiency of cystine transporter
- Cystine excreted in urine
- Cys precipitates in renal tubules (systine stones)–>cause of renal stones in children
Hartnup’s Disease
- inherited defect in transport of neutral amino acids (ex: tryptophan)
- decreased absorption and increased excretion (due to decreased reabsorption)
- Some pts experience niacin def (low protein diet)–>NAD+ deficiency aka pellagra (niacin is usually synthesized from W)
- 4D’s of Pellagra: diarrhea, dermatitis, dementia, death
Ketogenic Amino acids
exlusively: Leu, Lys
also glucogenic: Ile, Phe, Tyr, Trp
Ile, Leu—>acetyl-CoA
Leu, Lys, phe, trp, tyr–>acetoacetyl-CoA
Glucogenic AA
everything except Leu and Lys
also Ketogenic: Ile, Phe, Tyr, Trp
*Asn, Asp-->OAA Phe, Tyr--->fumarate Ile, Val (branched chain)-->Succinyl-CoA **Ala-->pyruvate **Glu, Gln-->α-ketogluterate
ALT
- Alanine aminotransferase/transaminase
- Requires PLP (B6)
Ala + αKG Pyruvate + Glu
reversable, driven by concentration
-in liver, entrance of asp into TCA, also another enzyme that can interconvert Glu and α-KG
Importance of Alanine
- major transport Amino acid from muscle to liver (glucose/alanine cycle)
- major precursor of glucose genesis (ALT to pyruvate)
Glucose/Alanine cycle
a/k/a Cori Cycle:
- pyruvate formed in muscle converted to Ala and transported to liver
- in liver turned back to pyruvate, used as substrate for glugoneogenesis, glucose put back into blood to muscle
Glutamate dehydrogenase
Glutamate + NAD+ α-ketogluterate + NH3 + NADH
- Oxidative deamination/reductive amnination (backwards)
- Goes forwards in liver to deliver α-ketogluterate to TCA under starvation, also release NH3 for urea cycle
-Goes reverse in peripheral tissues to sequester NH3 for transport to liver for urea cycle when tissue [NH3] is high
1 of 3 enzymes that can incoporate free NH3
AST
Aspartate aminotransferase a/k/a serum glutamic oxaloacetic transaminase (SGOT)
Requires PLP (B6)
Aspartate + α-ketogluterate Oxaloacetate + Glutamate
-in liver, entrance of asp into TCA, also another enzyme that can interconvert Glu and α-KG
enzymes that do: α-ketogluterateglutamate
ALT, AST, and glutamine transaminase
Glutamine Synthetase
Glutamate + NH3 + ATP—->Glutamine + ADP + Pi
- present in peripheral tissues, especially important in Brain (neurotransmitter synthesis I belive uses many deaminations, maybe) and endothelium of hepatic vein (prevent free NH3 from getting to the rest of the body)
- 1 of 3 enzymes that can incorporate free NH3
- Glutamine used to transport NH3 to liver