Molecular Genetics - Gynaecological Cancers (VI) Flashcards
3 clinical applications of HPV test?
1) Primary screening
2) Triage of atypical squamous of undetermined significance (ASCUS)
3) Test of cure
Inheritance pattern of BRCA1/2- associated hereditary breast and ovarian cancer
Autosomal dominant
Germline mutation of BRCA1 and BRCA2
Associated diseases and risks of BRCA1/2 positive
Definitively increase lifetime risks of:
- Ovarian cancer
- Fallopian tube cancer (BRCA1 only)
- Breast cancer
- possibly others: melanoma, colorectal, stomach…etc
Histological types of tumors caused by BRCA mutation.
1) High grade Serous Adenocarcinoma
- Ovary, Peritoneum, Fallopian tube, Endometrium
2) Serous Tubal Intraepithelial Carcinoma (STIC)
- Fallopian tube
Describe response of BRCA mutation carriers with BRCA-related cancer to platinum-based chemotherapy and PARP inhibitors
BRCA carrier:
Higher initial response to plat- based chemotherapy
Similar survival rate after 5 and 10 years as non-carriers
good response to PARP inhibitor, improve survival
2 methods to identify BRCA mutation
Sanger sequencing
Next generation sequencing
5 classes of BRCA mutation related to risk of disease progression
Increased risk of disease:
- Pathogenic
- Likely pathogenic
No increased risk of disease:
- Benign
- Likely benign
Unclear
- Variant of Unknown Significance
Difference in results from BRCA blood test and BRCA tumour testing for high grade serious ovarian cancer.
BRCA in blood = germline or somatic mutation
BRCA in tumour = Pathological variant, Variant of unknown significance, Negative
Not clinically important to differentiate germline or somatic > both use PARP anyways
Germline mutation identified for genetic counseling
Which BRCA test can differentiate somatic and germline mutation?
BRCA blood test
Genetic cause of HNPCC?
Inheritance pattern?
Constitutional mutation in 1 of 4 DNA mismatch repair genes: MSH2, MSH6, PMS2, MLH1
Deletion of 3’ EPCAM can extend into MSH2 and result in same phenotype
Autosomal dominant inheritance
Function of Mismatch repair genes?
Consequence if mutated?
MMR genes maintain microsatellite stability
Microsatellite = tract of repetitive DNA motifs that can slip at parental or daughter DNA strand
MMR repairs slippages
Loss of MMR causes microsatellite instability
Cancers associated with HNPCC?
- Colorectal
- Prostate
- Endometrium, ovary
- Stomach, small bowel
- Urinary tract
- Brain
Diagnostic criteria of genetic mutations causing HNPCC?
Germline mutation in MMR genes (MSH2, MSH6, PSM2, MLH1)
EPCAM mutation
Lynch syndrome
3 methods for diagnosis
1) IHC for MMR proteins
2) Microsatellite instability analysis:
- Microsatellite stable (MSS)
- Low MSI (MSI-L)
- High MSI (MSI-H)
3) Next generation sequencing Gene panel testing
Define the MMR screening scheme for Lynch syndrome/ HNPCC
Aberrant MMR seen on IHC
- MSH2/ MSH6 loss of expression from germline MMR mutation + No germline EPCAM mutation = Lynch syndrome
- MLH1/ PSM2 loss of expression + MLH1 promoter methylation = Sporadic mutation
No MLH1 promoter methylation = germline mutation