Module 6.1 Flashcards

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1
Q

what is a mutation

A

a mutation is a random change to the genetic material . Some mutations involve changes to the strucuture or number of chromosomes . A gene mutation is a change to the DNA .

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2
Q

How may mutations occur

A

mutations may occur spontaneously during DNA replication before cell division . Certain chemicals such as tar in tobacco smoke , and ionising radiation such as UV light , xrays and gamma rays may e mutagenic .

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3
Q

the strucutre of the dna moleucle makes it stable and fairly resistant to corruption of the genetic information stored within it . Errors may occur , howeer during the replicaion od a sna moleucle , what processes is mutation gonna occur in

A

Mutations associated with meiosis and gamete formation may be inherited by offspirng .
-Gene mutations may affect protein production and funciton.

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4
Q

what are the two main classed of DNA mutation

A

-point mutation ; one base pair replaces (is substitued for ) another .
-Insertion or deletion (indel) mutation one or more nuclleotides are inserted or deleted from a length of DNA . Thesse may cause a frame shift .

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5
Q

what is a frameshift

A

alteration to the base sequence of a length of DNAA due to an insertion or deletion of a nucleotide base .

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6
Q

what are point mutations

A

the genetic code consists of nucleotide base triplets within the DNA .
-During the transcription of a gene , this code is copied to a length of mRNA, as codons , complementary to the base triplets on hte template strands of the length of DNA . The sequence of codons of the mRNA is therefore copy of the sequence of base triplets on the gene (coding of the DNA ) .

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7
Q

what are the three types of point mutation

A

-Silent
-Missense
-Nonsense

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8
Q

What are point mutations not always causing an effect .

A

all amino acids involved in protein sumthesis apart from methionine , have more than one base triplet code .

-This reduces the effect of point mutations as the do not always cause a change to the sequence of amino acid in a protein . This is often called redundancy or degeneracy of the genetic code .

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9
Q

What are silent mutations check page 163

A

A point mutation involving a change to the base triplet , where that triplet still codes for the same amino acid is a silent mutation . The primry structure of the protein and therefore the secondary and tertiary structure is not altered .

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10
Q

what are missense mutations

A

a change to the base triplet sequence that leads o a change in the amino acid sequence is a missense mutaiton .
-within a gene , such a point mutaiton may have a significnt effect on the protein prpoduced .

-The alteration to the primary structure leads to a change to the tertiary structure of the protein ,altering its shape and prventing it from carrying out its usual funciton .

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11
Q

what are nonsense mutations

A

a point mutaaiton may alter a base triplet so that it becomes a terminiation stop triplet . This particularly disruptive point mutation resuls in a truncated protein that will not function . This abnromal protien will most likle be degraded within the cell .

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12
Q

what can cause frameshits

A

both insetions and deetions

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13
Q

explain frame shift in depth (1)

A
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14
Q

explain frame shift in depth (2)

A

-This is a frameshift . When the mRNA from such a moated gene is translated the amino acid sequence alter the frameshift is severely disrupted . The primary sequence of the protein , and subsequently the tertiary structure , is much altered . Consequently , the protein cannot carry out its normal function . If the protein is very abnormal , it will be rapidly degraded within the cell .

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15
Q

are all mutations harmful

A

many mutations are beneficial and have helped to drive evolution hrough natural selection . Different alles of a particular gene are produced via mutation .

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16
Q

examples of netural mutations - neither beneficial or harmful

A

-inability to smell certain flowers - honeysuckle
different shaped ear lobes

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17
Q

what is an exon

A

the coding or expressed region of DNA

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18
Q

What is an intron

A

the non-coding region of DNA

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19
Q

What is an operon

A

a group of genes that function as a single transcription unit ; first identified in prokaryote cells /

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20
Q

what is a transcription factor

A

protein , or short , non-coding rna , that combine with a specific site on a length of DNA and inhibit or activate transcription of the gene .

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21
Q

what is the rate that enzymes are catalysed at ?

A

enzymes that catalyse metabolic reactions involved in basic cellular functions are synthesises at a fairly constant rate.
-Enzymes that may only be needed under specific conditions are synthesised at varying rates according to the needs of the cell .

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22
Q

what is E coili

A

it normally metabolises glucose as respiratory substrate /

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23
Q

what happens if glucose is absent and the disaccharide lactose is present

A

lactose induced the production of two enzymes
-lactose permease which allows lactose to enter the bacterial cell .
beta galactosidase which hydrolyses lactose to glucose and galactose .

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24
Q

check figure 1 on page 165 , what is the lac operon

A

it consists of a length of DNA about 6000 base pairs long , containing an operator region Lac O , next to the structural genes lacZ and lacY , that code for the enzymes beta galactosidase and lactose permease respectively .

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25
Q

what is next to the operator region lac O

A

it is the promoter region , P , to which the enzyme RNA polymerase binds to begin transcription of the structural genes lacZ and lacY .

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26
Q

what is the control sites

A

the operator region and the promoter region

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27
Q

what is a small distance away from the operon

A

it is the regulatory gene , that codes for a repressor protein . When this regulatory gene is expressed the repressor protein produced binds to the operator preventing RNA polymerase from binding to the promoter region .

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28
Q

what does the represor protein prevent

A

the lacZ and lac Y , from being transcribed ( expressed ) , so the enzymes for lactose metabolism are not made . The genes are ‘off’ .

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29
Q

What happens when lactose is added to the culture medium

A

once all the glucose has been used , molecules of lactose bind to the Lacl repressor protein preventing it from binding to the operator .

-The RNA polymerase enzyme can then bind to the promoter region and begin transcribing , the structural genes into the mRNA , that will then be translated into the two enzymes . Thus lactose induces the enzymes needed to break it down .

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30
Q

Does every cell in a eukaryotic organism has the same genome , but different cells use it differently and they function differently .

A

This is the basis of cell differentiation . In neurones , the genes being expressed differ to some extent from those being expressed in a liver or kidney cell, although all cells express the basic housekeeping genes .

31
Q

how to transcription factors work (1)

A

they slide along a part of the DNA molecule , seeking and binding to their specific promoter regions . They may then aid or inhibit the attachment of RNA polymerase to the DNA and activate or supress the transcription of the gene ,.

32
Q

why are transcription factors essential

A

they are essential for the regulation of gene expression in eukaryotes , making sure that different genes in different types of cells are activated or supressed .

33
Q

examples of trancription factors

A

-regulation of the cell cycle .
-tumour suppressor . this is about 8 percent of genes in the human genome encode transcription factors .

34
Q

explain the transcription of introns and exons

A

All of the DNA , of a gene , both introns and exons is transcribed , the resulting mRNA , is called primary mRNA . This is then edited and the RNA introns - lengths corresponding to the DNA introns are removed . The remaining mRNA exons corresponding to the DNA exons .

35
Q

explain the transcription of introns and exons- what enzyme may be involved in the editing and splicing processes .

A

endonuclease enzymes

36
Q

what may some introns be involved in

A

they may themselves encode proteins ,and some may become short non-coding lengths of RNA involved in gene regulation . Some genes can be spliced in different ways . A length of DNA with introns and exons can according to how it is , spliced , encoded more than one protein .

37
Q

what is post translational level of gene regulation

A

involves the activation of proteins , many enzymes are activated by being phosphorylated .

38
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (1)

A
  1. A signalling , molecule such as the protein hormone glucagon binds t a receptor on the plasma membrane of the target cell .
39
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (2)

A

This activates a transmembrane protein which then activates a G protein .

40
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (3)

A

The activated G protein activates adenyl cyclase enzymes

41
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (4)

A

activated adenyl cyclase , enzymes catalyse , the formation of many molecules of cAMP from ATP .

42
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (5)

A

cAMP , activates PKA

43
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (6)

A

Activated PKA , catalyses the phosphorylation of various proteins , hydrolysing ATP in the process . This phosphorylation activates many enzymes in the cytoplasm for example those that convert glycogen to glucose .

44
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (7)

A

PKA may phosphorylate another protein response element bindings .

45
Q

check figure 6 on page 168 , how does cAMP , activate enzymes and may also stimulate transcription (8)

A

This then enters the nucleus and acts as a transcription factor to regulate transcription .

46
Q

meaning of apoptosis

A

programmed cell death

47
Q

meaning of conserved

A

has remained in all descendant species throughout evolutionary history .

48
Q

what is homeobox sequence

A

sequence of 180 base pairs (excluding introns ) found within genes that are involved in regulating patterns of anatomical development in animals , fungi and plants .

49
Q

Meaning of Hox genes

A

subset of homeobox genes , found only in animals , involved in formation of anatomical features in correct locations of body plan .

50
Q

What do homeobox sequences allow for

A

they are involved in controlling the anatomical development or morphogenesis of an organisms , so that all structures develop in the correct location , according to the body plan .

51
Q

what does a homeobox sequence consist of

A

it consist of a stretch of 180 base pairs , encoding 60 amino acid sequence , called a homeodomain sequence within a protein .

52
Q

What can a homeodomain sequence fold into

A

-into a particular shape and then bind to DNA , regulating the transcription of adjacent genes . These proteins are transcription factors and act within the cell nucleus .

53
Q

what is the shape that the homeodomain sequence folds into

A

it is called the H-T-H . It consist of two alpha helices (h) connected by one turn (t) . Part of the homeodomain amino acid sequence recognises the TAAT sequence of the enhancer region ( a region that initiates or enhances transcription ) of a gene that needs to be transcribed .

54
Q

homeotic genes that are in a mouse are also in a fruit fly ?

A

This informed scientists that these genes sequences are crucial for the regulation of development and differentiation in organisms .

55
Q

what do hox genes regulate

A

the development of embryos along the anterior - posterior head-tail axis . They control which body parts grow where . If hox genes are mutated , abnormalities can occur such as the antennae on the head . check f1 on 169 .

56
Q

How are hox genes arranged ?

A

in clusters and each cluster may contain up to 10 genes .

57
Q

how are hox genes expressed in early embryonic development

A

they are active , and expressed in order along the anterior - posterior axis of the developing embryo . The sequential and temporal (in time ) order of the gene expression corresponds to the sequential and temporal development of the various body parts , phenomenon known as collinearity .

58
Q

what do hox genes encode for

A

homeodomain proteins that act in the nucleus as transcription factors and can switch on cascades of activation of other genes that promote mitotic cell division apoptosis cell migration and also helps to regulate the cell cycle .

59
Q

Learning tip - all hox genes are homeobox genes ?

A

yes , but not all homeobox genes are Hox genes . Rather in the way that all mobile phones are examples of technology , but not every piece of technological equipment is a mobile phone .
-Hox genes are a subset of homeobox genes and are found only in animals . Homeobox genes are found in plants fungi and animals .

60
Q

How are regulators regulated

A

Hox genes are regulated by other genes called gap genes , and pair-rule genes . In turn , these genes are regulated maternally supplied mRNA , from the egg cytoplasm .

61
Q

how does homeobox help to regulate mitosis

A

it ensures that each new daughter cells contains the full genome and is a clone of the parent cell .
-During cell differentiation some of the genes in a particular type of cells are switched off and are not expressed .

62
Q

apoptosis is DIFFERENT TO CELL DEATH due to trauma

A

which involves hydrolytic enzyms .

63
Q

stage one of apoptosis

A
  1. enzymes break down the cell cytoskeleton .
64
Q

stage two of apoptosis

A
  1. the cytoplasm becomes dense with tightly packed organelles .
65
Q

stage three of apoptosis

A

the cell surface membrane changes and small protrusions called blebs form .

66
Q

stage four of apoptosis

A

chromatin condenses the nuclear envelope breaks and DNA breaks into fragments .

67
Q

stage five of apoptosis

A

the cell breaks into vesicles that are ingested by phagocytic cells , so that cell debris does not damage any other cells or tissues , whole process happens quickly .

68
Q

what controls apoptosis (1)

A

Many cells signals help to control apoptosis . Some of these signalling molecules may be released b y cells when genes that are involved in regulating the cell cycle and apoptosis respond to internal cell stimuli and external stimuli such as stress .

69
Q

what are the signalling molecules that control apoptosis

A

cytokines from the cells of the immune system ,
-hormones , growth factors and nitric oxide .

70
Q

how can nitric acid specifically induce apoptosis

A

nitric oxide can induce apoptosis by making the inner mitochondrial membrane more permeable to hydrogen ions and dissipating the proton gradient . Protein , are released into the cytoplasm where they bind to apoptosis inhibitor proteins allowing apoptosis to occur .

71
Q

why is apoptosis is an integral part of plant and animal tissue development .

A

extensive , proliferation of cell types is prevented by pruning , through apoptosis , without release of any hydrolytic enzymes that could damage surrounding tissues .

72
Q

how does apoptosis help in limb development

A

it causes the digits to separate from each other .
-apoptosis removes ineffective or harmful t lymphocytes during the development of the immune system ,

73
Q

the rates of the cells dying should equal the rate of cells produced by mitosis , what if this is not the case ;

A

-not enough apoptosis leads to the formation of tumours .
-too much apoptosis leads to cell loss and degeneration .
-Cell signalling plays a crucial role in maintaining the right balance .