Microbiology- First Aid Flashcards
Bacteria that do not Gram stain well
Treponema, Mycobacteria, Mycoplasma, Legionella pneumophila, Rickettsia, Chlamydia
Giemsa Stain
Chlamydia, borrelia, Rickettsiae, Trypanosomes, Plasmodium
PAS Stain
Tropheryma whipplei
Ziehl-Neelsen
Nocardia, Mycobacterium (acid fast)
India ink
Crytococcus neoformans
Silver stain
Legionella, Helicobacter pylori, pneumocystis
Obligate Aerobes
Nocardia, Pseudomonas, Mycobacterium tuberculosis
Obligate Anaerobes
Clostridium, Bacteroides, Actinomyces
Obligate intracellular
Rickettsia, Chlamydia
Facultative intracellular
Salmonella, Neisseria, Brucella, Mycobacterium, Listeria, Francisella, Legionella, Yersinia pestis
Encapsulated bacteria
Strep pneumoniae, haemophilus influenzae type B, Neisseria meningitidis, Escherichia coli, Salmonella, Klebsiella pneumoniae, group B strep
Catalase positive
Pseudomonas, Listeria, Aspergillus, Candida, E.coli, S. aureus, Serratia
Urease positive
Cryptococcus, H. pylori, Proteus, Ureaplasma, Nocardia, Klebsiella, Staph epidermis, Staph saprophyticus
Pigment producing bacteria
Actinomyces israelii (yellow granules) Staph aureus (yellow) Pseudomonas aeruginosa (blue-green pigment) Serratia marcescens (red pigment)
Effects of endotoxin (lipid A- mediated)
fever, hypotension, edema, neutrophil, chemotaxis, DIC
Toxins whose genes are encoded by a phage
shiga-like toxin, botulinum, cholera, diptheria, erythrogenic toxin (strep pyogenes)
Novobiocin
Staph Epidermidis is sensitive; Staph saprophyticus is resistant
Optochin
Strep viridans is resistant; strep pneumoniae is sensitive
Bacitracin
group B strep (agalactiae) are resistant; group A strep (pyogenes) are sensitive
Both group A and group B are beta-hemolytic
Staph epidermidis
infects prosthetic devices and IV catheters by producing adherent biofilms
Staph saprophyticus
2nd leading cause of uncomplicated UTI
Strep pneumoniae
meningitis, otitis media, pneumonia, sinusitis, alpha-hemolytic
Viridans group streptococci
Strep mutans- dental caries
Strep sanguinis- subacute bacterial endocarditis
Strep pyogenes
pharyngitis, cellulitis, impetigo, scarlet fever, toxic shock-like syndrome, necrotizing fasciitis, rheumatic fever, acute glomerulonephritis
Jones criteria for rheumatic fever
polyarthritis, carditis, subq nodules, erythema marginatum, sydenham chorea
Scarlet Fever
scarlet rash with sandpaper-like texture, strawberry tongue, circumoral pallor
Strep agalactiae
colonizes vagina causing pneumonia, meningitis, and sepsis in neonates
Enterococcus faecalis and faecium
penicillin G resistant, UTI, biliary tract infections, subacute endocarditis (post-GU/GI procedures)
Strep bovis
colonizes the gut, can cause bacteremia and subacute endocarditis in colon cancer patients
Corynebacterium diphtheriae
AB exotoxin ADP-ribosylates EF-2
Symptoms include pseudomembranous pharyngitis with lymphadenopathy, myocarditis, and arrhythmias
Spore-forming bacteria
Bacillus anthracis, Clostridium perfringens, Clostridium tetani, Bacilus cereus, Clostridium botulinum, Coxiella burnetii
Anthrax
Bacillus anthracis, a gram + spore-forming rod that is the only bacterium that contains a polypeptide capsule
Cutaneous anthrax
boil-like lesion–> ulcer with black eschar
Pulmonary anthrax
inhalation of spores–> flu-like symptoms that rapidly progress to fever, pulmonary hemorrhage, mediastinitis, and shock
Bacillus cereus
nausea and vomiting, watery nonbloody diarrhea, reheated rice syndrome
Listeria monocytogenes
- acquired by ingestion of unpasteurized dairy products and deli meats, via transplacental trasmission, or by vaginal transmission during birth
- only gram + to produce LPS
- causes amnionitis, septicemia, spontaneous abortion, granulomatosis infantiseptica, neonatal meningitis, meningitis in immunocompromised patients, mild gastroenteritis
Types of mycobacteria and their findings
Tuberculosis- TB
Kansassi- pulmonary TB like symptoms
Avium-intracellulare- disseminated non TB disease in AIDS
TB symptoms
fever, night sweats, weight loss, and hemoptysis
Lepromatous M. Leprae
diffuse infection over skin, leonine facies, communicable, humoral Th2 response
Tuberculoid M. Leprae
limited to a few hypoesthetic hairless skin plaques, characterized by cell-mediated Th1- type response
Lactose-fermenting enteric bacteria
Citrobacter, Klebsiella, E.coli, Enterobacter, Serratia
Haemophilus influenzae
Epiglottitis, meningitis, otitis media, pneumonia
H. influenzae culture
Chocolate agar with factor V (NAD+) and X (hematin)
Legionella pneumophila
- Gram negative rod
- Grows on charcoal yeast extract culture with iron and cysteine
- Aerosol transmission from environmental water source
- Severe pneumonia, fever, GI and CNS symptoms (Legionnaires’ disease)
- mild flu-like syndrome (Pontiac fever)
Hemolytic uremia syndrome
anemia, thrombocytopenia, acute renal failure
Klebsiella
- Intestinal flora that causes lobar pneumonia in alcoholics and diabetics when aspirated
- red currant jelly sputum
- gram negative lactose fermenting rods
Salmonella typhi
- Typhoid fever
- Rose spots on abdomen, fever, headache, and diarrhea
- Remain in gallbadder (carrier state)
Campylobacter jejuni
- oxidase positive
- bloody diarrhea
- fecal oral transmission
- common antecedent to Guillain-Barre syndrome and reactive arthritis
Vibrio Cholera
- oxidase positive
- comma shaped
- rice water diarrhea that activates Gs (increases cAMP)
Yersinia enterocolitica
- transmitted from pet feces, contaminated milk, pork
- mesenteric adenitis that can mimic Crohn disease or appendicitis
Helicobacter pylori
- gastritis and peptic ulcers (especially duodenal)
- curved rod that is catalase, oxidase and urease positive
- triple therapy: PPI, clarithromycin, amoxicillin or metronidazole
Spirochetes
Borrelia (biggest), Leptospira, Treponema
Leptospira interrogans
- transmitted by water contamination of animal urine
- leptospirosis: flu-like, jaundice, photophobia with conjunctival erythema without exudate
- Weil disease: severe form with jaundice, azotemia, fever, hemmorhage, and anemia
Lyme disease
- Borrelia burgdorferi
- Ixodes tick
- Initial symptoms: erythema migrans, flu-like symptoms, facial nerve palsy
- monoarthritis, migratory polyarthritis, AV nodal block, encephalopathy, facial nerve palsy, polyneuropathy
- doxycycline ceftriaxone
VDRL false positives
mononucleosis, EBV, hepatitis, drugs, SLE, leprosy
Jarisch-Herxheimer
flu-like syndrome after abx are started due to killed bacteria releasing pyrogens
Gardnerella vaginalis
- vaginosis (fishy smell of vagina, nonpainful, associated with sexual activity)
- vaginal epithelial cells covered with gardnerella
- tx metronidazole, clindamycin
Rickettsia rickettsii
- tick vector
- Rocky mountain spotted fever
- rash starts in palms and soles, spreads to trunk, palms, and soles
- headache, fever, rash
Rickettsia typhi/prowazekii
-rash starts centrally and spreads out, spares palms and soles
Ehrlichia chaffeenis
- tick vector
- Ehrlichiosis
- monocytes with morulae (berry like inclusions in the cytoplasm)
Anaplasma
- tick vector
- granulocytes with morulae in cytoplasm
- Anaplasmosis
Coxiella burnetii
- spores inhaled as aerosol
- pneumonia
- no rash
Mycoplasma pneumoniae
- pneumonia (insidious onset, headache, nonproductive cough, patchy or diffuse interstitial infiltrate)
- grown on Eaton agar
- IgM
- Tx, macrolide, doxycycline, fluoroquinolone
Systemic mycoses
- pneumonia
- dimorphic (mold in cold, yeast in heat)
- tx is fluconazole or itraconzaole for local infection and amphotericin B for systemic infection
- mimic TB (granuloma formation)
Tinea versicolor
- Malassezia furfur
- hypo/hyperpigmented patches
- hot/humid weather
- spaghetti and meatball appearance
- topical miconazole, selenium sulfide
Giardiasis
- Giardia lamblia
- bloating, flatulence, foul-smelling, fatty diarrhea
- cysts in water
- trophozoites or cysts in stool
- metronidazole
Amebiasis
- Entamoeba histolytica
- bloody diarrhea
- liver abscess
- RUQ pain (rupture of submucosal abscess of colon)
- cysts in water
- trophozoites (with RBC’s in the cytoplasm)
- cysts in stool
- metronidazole or iodoquinol (for asymptomatic cyst passers)
Cryptosporidium
- severe diarrhea in AIDS
- water diarrhea in immunocompetent
- oocysts in water
- acidfast stain
- nitazoxanide in immunocompetent
Toxoplasmosis
- Toxoplasma gondii
- brain abscess in HIV
- chorioretinitis, hydrocephalus, intracranial calcifications
- cysts in meat or oocysts in cat feces, placental transmission
- serology or biopsy (tachyzoite)
- sulfadiazine+pyrimethamine
Naegleria fowleria
- rapidly fatal meningoencephalitis
- swimming in freshwater lakes (enters via cribiform plates)
- ameobas in spinal fluid
- amphotericin B
Trypanosoma brucei
- African sleeping sickness (enlarged lymph nodes, recurring fever, somnolence, coma)
- antigenic variation
- tsetse fly
- suramin for blood-borne disease or melarsoprol for CNS penetration
Babesia
- babesiosis
- fever, hemolytic anemia
- Ixodes tick, northeastern U.S.
- blood smear either ring or Maltese cross
- Tx, atovaquone, azithromycin
Trypanosoma cruzi
- Chagas disease
- dilated cardiomyopathy, megacolon, megaesophagus
- reduviid bug
- Tx, benznidazole, nifurtimox
Leishmania donovani
- visceral leishmaniasis
- spiking fevers, hepatosplenomegaly, pancytopenia
- sandfly
- macrophages containing amastigotes
- Tx, amphotericin B, sodium stibogluconate
Trichomonas vaginalis
- vaginitis
- foul smelling, greenish discharge, itching and burning
- trophozoites on wet mount
- metronidazole for patient and partner
Enterobius vermicularis (pinworm)
- fecal oral
- intestinal infection causing anal pruritis
- scotch tape test
- bendazoles or pyrantel pamoate