Microbiology 4 Flashcards
Halophilic Vibrio except
V. cholerae and V. mimicus
Sucrose fermenters of Vibrio
(colony and medium)
V. cholerae and V. alginolyticus
Yellow on TCBS
Spread through eating raw/undercooked shellfish
Cholera
Cholera biotype resistant to polymyxin B
El Tor
Cholera subgroups associated with pandemic cholera
V. cholerae O1 and O139
Cholera serogroups
Inaba, Ogawa, Hikojima
Susceptible to 0/129
V. cholerae
String test reagent
0.5% Sodium deoxycholate
“Summer diarrhea”
Vibrio parahaemolyticus
Lactose positive Vibrio
V. vulnificus
Pink-centered/bull’s eye colony on CIN
Aeromonas
Fresh-water fish
Aeromonas
Plesiomonas colony and medium
White to pink in INOSITOL brilliant green bile salt agar
Aeromonas identifying test
Mannitol positive
Plesiomonas identifying test
Inositol positive
Broth with 6.5% NaCl
Vibrio
Ammonium cyanide odor on SBA
Violent pigment
CPOP
Chromobacterium violaceum
Campylobacter culture medium
Campy-BAP
Skirrow’s
Campylobacter jejuni vs Helicobacter pylori
Campylobacter: Cephalotin resistant
Helicobacter: Nalidixic acid resistant
Top 3 MDR cause of nosocomial infections
- P. aeruginosa
- Acinetobacter baumannii
- Stenotrophomonas maltophilia
Asaccharolytic
“Hindi sweet si Jason AMOA”
Alcaligenes
Moraxella
Oligella
Acinetobacter iwoffii
“Serrated confluent growth” in cetrimide agar
PAU
PAU is the #1 cause of infection in
Burn
Cystic fibrosis
“Swimmer’s ear”
Ecthyma gangrenosum
Jacuzzi hot tub/Whirlpool dermatitis
PAU
One of PAU virulence factor
Exotoxin A
Glanders disease
Burkholderia mallei
“Vietnamese time bomb” or Meliodosis
Bukholderia (Pseudomonas) pseudomallei
Deep pink, wrinkled colonies in Ashdown medium
“Earthy odor”
B. pseudomallei
Pink on PC and MAC agar
B. cepacia
Lavender green colony on BAP
“Ammonia-like odor”
Yellow pigment on TSA
Stenotrophomonas maltophilia
Strong maltose oxidizer
S. maltophilia
Blue-grey (Cornflower blue) on EMB
Purple on MAC
Acinetobacter
CPON LDC(+) motile
S. maltophilia (vs. Acinetobacter)
Alcaligenes vs Bordetella
Urease
(+) vs (-)
MAC (-)
DNAse (+)
Flavin pigment
Chryseobacterium meningosepticum
HAEMOPHILUS HACEK-before Mycobac
Common causes of TB in humans
M. tuberculosis, africanum, cannetti
MTB measurement
0.2-0.6 micron in diameter
1-4 micra in length
MTB virulence factor that prevents fusion of phagosome and lysosome and recruitment of neutrophils
Cord factor
Reliable/rapid method of MTB identification showing parallel chains
Cord formation (Serpentine cords)
Droplets of dried sputum in the air for MTB may be infectious for (days)
8-10 days
Hours an MTB culture upon sun exposure be killed
2 hours
Hours an MTB sputum upon sun exposure be killed
20-30 hrs
Dried sputum remains infectious for
6-8 months
Droplets of dried sputum remain infectious for
8-10 days
Inspissation temp/hrs
75-80C 2hrs 3 days
Multinucleated giant cells/fusion of macrophages in MTB
Langhans cell
Vit B6 deficiency leading to Peripheral neuropathy
Isoniazid
MTB primary drug that cause uric acid crystals
Pyrazinamide
MTB primary drug that cause red/green colorblindness
Ethambutol
Primary drugs for MTB (TB-DOTS)
“RIPE”
Rifampicin, Isoniazid, Pyrazinamide, Ethambutol
Resistant to Rifampin and Isoniazid TB
MDR TB
Ideal size DSSM
2-3cm (thumb size)
Ideal size smear blood drop
2-3mm
Decontaminating and Digesting agents for MTB
NAOH
NALC (N-acetyl-L-cysteine)
Diagnose latent TB infection
IGRA Interferon gamma release assay
Can detect drug-resistant MTB
GeneXpert (PCR-based NAAT)
Swimming pool granuloma
M. marinum
Yellow bacillus
M. kansasii
Scrofula
Cervical lymphadenitis
Mycobacterium scrofulaceum
Tap water bacillus
Mycobacterium gordonae
Group II: Scotochromogens
“Sc Sz X gordon”
M. scrofulaceum
M. szulgai
M. xenopi
M. gordonae
Group I: Photochromogens
“MASK”
M. marinum
M. asiaticum
M. simiae
M. kansasii
M. avium-intracellulare complex SPECIMEN
Stool
MTB culture medium for contaminated spx
Petragnani (increased malachite green)
Buruli ulcers, “Inert bacillus”
M. ulcerans
Inert HACEK
Eikenella corrodens
“Radish bacillus”
M. terrae-triviale
Group IV: Rapid growers
“FPASCh”
M. fortuitum
M. phlei
M. abscessus
M. smegmatis
M. chelonei
Nitrate positive rapid grower
M. fortuitum
Mimics TB
“NocHisPa kasi parang may TB”
Nocardia asteroides (bacteria)
Histoplasma capsulatum (fungi)
Paragonimus westermani (parasite)
M. leprae stain
Fite-faraco’s
(hematoxylin as counterstain)
Leprosy manifestation:
Lepromine and CMI (+)
Few AFB
Tuberculoid leprosy
Test for M. kansasii
Tween 80 HOH
Biochemical tests for MTB and results
Niacin accumulation test - (+) yellow color
Nitrate reduction - (+) broth: pink/red; strip: blue
Pyrazinamidase
MPT64 antigen
T2H susceptibility/inhibition test - (-) inhibition of growth
Lumpy jaw, Actinomycosis
Molar tooth colonies
Actinomyces israelii
Positive on tap water agar
Nocardia
Streptomyces
Nocardiopsis
Positive for the hydrolysis of casein, xanthine, tyrosine
Nocardia transvalensis
Negative for the hydrolysis of casein, xanthine, tyrosine
Nocardia asteroides
Whipple’s disease - PAS-staining macrophages
Tropheryma whipplei
Longest bacteria
Borrelia
Borrelia culture medium
Barber Stoenner Kelly BSK
33C 6 weeks
Soft, painful chancroid
H. ducreyi
Hard, painless chancre
Treponema pallidum
Tabes dorsalis
Tertiary syphillis - neurosyphilis
Degeneration of lower spinal cord
Congenital syphilis triad
Hutchinsonian triad
Notched teeth
Keratitis
Nerve deafness
Current treatment for syphillis
Penicillin G
Agent of yaws
Treponema pertenue “pertenYAW”
Agent of bejel
Endemic syphilis
Treponema endemicum
Agent of pinta
Treponema carateum
Silver stains
Warthin starry
Levaditi
Fontana tribondeau
Severe form of leptospirosis
Weil’s disease (icterohemorrhagiae)
Gold standard for leptospirosis diagnosis
Microscopic agglutination test
Parrot fever
Psittacosis/Ornithosis
Chlamydia psittaci
3 causes of Guillain Barre Syndrome
Campylobacter jejuni
Chlamydophila pneumoniae
Zika virus
C. pneumoniae culture
Hep2 cells, Human cell lines
Associated with TWAR strain
Taiwan Acute Respiratory strain
Chlamydophila pneumoniae
Only chlamydia sensitive to sulfonamide
Chlamydia trachomatis
Lymphogranuloma venereum
C. trachomatis subtypes L1, L2, L3
TRIC
Trachoma, Inclusion conjunctivitis
Specimen for NAAT C. trachomatis
Early morning first voided urine
Pear-shaped elementary bodies
Chlamydia pneumoniae
With glycogen inclusions
Sensitive to sulfonamide
Round elementary bodies
Chlamydia trachomatis
All rickettsia cannot survive outside host/vector EXCEPT
Coxiella
Human granulocyte erlichiosis
Anaplasma phagocytophila
Human monocyte erlichiosis
Ehrlichia chaffeensis
Frequent cause of community-acquired pneumonia and tracheobronchitis
Eaton’s agent (M. pneumoniae)
Selective media for M. pneumoniae
SP4-glucose
Genital mycoplasmas
M. hominis
U. urealyticum
Growth on NYCA
Medium for M. hominis and U. urealyticum
SP4-arginine
SP4-urea
Large fried egg colonies
M. hominis
Tiny, fried egg colonies, dark brownish clumps
U. urealyticum
Trench fever agent and vector
B. quintana (human body louse)
Carrion’s disease, Oroya fever, Verruga Peruana fever
Bartonella bacilliformis
Cat scratch disease agents
Bartonella henselae
Afipia felis
B. clarridgeaie
Alternative for safranin counterstain in gram negative aerobes
0.5% aqueous basic fuchsin
Sulfur granules only seen macroscopically
Propionebacterium acnes
Cell wall composed of L-diaminopimelic acid
Sulfur granules
Blood culture contaminant
Propionebacterium (Cutibacterium) acnes
Anaerobic diphtheroid
Catalase and spot indole positive
Propionebacterium (Cutibacterium) acnes
Anaerobic diphtheroid
bifurcated cells “dog bones”
Bifidobacterium
Capsule, catalase positive
Black on BBE (20% bile)
Bacteroides fragilis
*BBE - Bacteroides Bile Esculin agar
Resistant to Kanamycin, Vancomycin, Colistin
Bacteroides fragilis
brick red fluorescence on UVL
Porphyromonas asaccharolytica
Prevotella melaninogenica
Do not grow on KVLB
Asaccharolytic
Vancomycin susceptible
Porphyromonas
Brown-black pigment on KVLB agar
Colistin susceptible
Prevotella melaninogenica
“Bread crumb colonies”
Gram negative bacilli:
Streptobacillus moniliformis (aerobic)
Fusobacterium nucleatum (anaerobic)
“bread crumb” colonies
greening on air exposure
chartreuse fluorescence
Fusobacterium nucleatum