MICROBIO W1-DAY2_ALN Flashcards
most effective method of sterilization
autoclave
autoclaving of media and instruments is set at:
121C, 15 psi for 15 mins
autoclaving of infectious medical waste
132C (270F) for 30-60 mns
QC for autoclave
Bacillus stearothermophilus
sterilizer used in tyndallization
Arnold’s sterilizer
Tyndallization = flowing steam set at:
100C for 30 mns for 3 successive days
In tyndallization, flowing steam is set for 3 consecutive days. Indicate the purpose of each day.
1: killing of vegetative cells
2: germinating spores
3: remaining spores and vegetative cells
“thickening through evaporation”
Inspissation
Inspissation is set at:
75-80C for 2 hours, 3 consecutive days
used to sterilize inoculating loops and needles
Flame
Killing principle/mechanism of dry heat
via oxidation
Usage of oven for sterilization is set at:
160-180 for 1.5-3 hrs
Biological indicator for QC of ovens
Bacillus subtilis
this is the most common method of treating infectious waste
Incineration
Incineration temp
870-980C
Safest method to ensure that no infective materials remain in samples or containers upon disposal
Incineration
Methods of culture media sterilization
Autoclave
Membrane filtration
T/F:
Evacuated tubes should be sterilized via autoclave and ethylene oxide gas
FALSE
This can alter pressure inside the tubes
The most effective filter used for sterilization via filtration
Asbestos - Sietz (98% effective)
Millipore size that equates to 100% bacterial sterility
0.22 um
Sterilization method of choice for antibiotic solutions, toxic chemicals, radioisotopes, vaccines, and carbohydrates
Filtration
Pertained to as filtrable agents of infection
Viruses
Filter: 0.22 um
Virus size: 0.01-0.03 um
In filtration, filtration of liquids is accomplished by pulling the solution through ___________ membrane with a vacuum
cellulose acetate
cellulose nitrate
Used to filter air
High-efficiency particulate air (HEPA) filter
removes organisms >0.3 um
Sterilization method of choice for syringes, catheter, gloves, and evacuated tubes
Ionizing radiation
Sterilization method involving high energy gamma rays
Ionizing radiation
Most common chemical sterilant
Ethylene oxide
Ethylene oxide biological indicator for QC
Bacillus subtilis
“cold sterilization”
ethylene oxide
glutaraldehyde
peracetic acid
This sterilization method kills spores in 3-10 hrs and is used for medical equipment (e.g., bronchoscopes) because it does not corrode lenses, metal, or rubber
glutaraldehyde
Sterilization method effective in the presence of organic material
Peracetic acid
The process that destroys pathogenic organisms, but not necessarily all microorganisms or spores
Disinfecition
Sterilization via boiling is set at what temp & duration
100C for 15 mns
This sterilization method is used mostly in food industry to prevent food spoilage
Pasteurization
Two methods by which pasteurization may be done
Batch method (Low-temp holding)
Flash method (High temp, short-time)
Batch method is set at:
63C for 30 mns
Flash method is set at:
72C for 15 secs
An example of this sterilization method is the use of mercury lamps (long wavelength, low energy)
Non-ionizing radiation
Disinfectants used on living tissue are termed:
Antiseptics
This destroys vegetative forms on inanimate objects (microbicidal)
Disinfectants
Alcohol concentration for disinfection
70%
increased water conc = for protein denaturation
Conc. of formaldehyde as disinfectant
8%
Conc. of glutaraldehyde as disinfectant
2%
Examples of halogens used as disinfectant
Iodine
Chloride
How long must iodine be applied to skin
60 secs
Iodine + detergent = ?
Iodophor
Used to neutralize chlorine (e.g., in pools)
Sodium thiosulfate
Bleach is also known as:
Sodium hypochlorite
How long before halogens inactive HBV?
10 mns
How long before halogens inactivate HIV?
2 mns
Common bleach dilution
1:10
1 part NaOCl, 9 parts H2O
Metal that is known as algicide
COpper
Eye drop solution containing ________ is used to prevent Opthalmia neonatorium
1% AgNO3
use of QUATS should be avoided in labs handling what type of microorganism?
MTB
Prior to culture of MTB specimens, ________ is used for decontamination to remove normal flora
QUATS
Benzalkonium chloride (zephiran) is under what category of disinfectant
QUATS
This is sued to disinfect bench tops or other surfaces in the lab and is rapidly inactivated by organic matter
QUATS
Standard disinfectant
Phenol
(denature proteins, disrupt cell membranes)
Phenol coefficient control for Gram + orgaisms
S. aureus
Phenol coefficient control for Gram - organisms
S. typhi
Expression of the bactericidal power of a particular substance as compared to pure phenol
Phenol coefficient
PC that indicates disinfectant is better than phenol
> 1
Ionizing radiation biological indicator for QC:
Bacillus pumilus
Dry heat oven biological indicator for QC:
Bacillus subtilis var. niger
Ethylene oxide biological indicator for QC:
B. subtilis var. globigii
Most common type fo BSC
Type II
Type of BSC used when radioisotopes, toxic chemicals, or carcinogens will be used
IIB
BSC with no recirculation
IIB2
BSC with the highest level of safety
Type III
Airborne microorganisms
Measles, varicella, TB, smallpox
Multi-drug resistant bacteria that is transmitted via contact
Clostridium difficile
JEMBEC system type of transport is used for what microorganism
N. gonorrhoeae
This substance is added to Stuart’s or Amie’s media to absorb FA present in the specimen
charcoal
Addition of charcoal to Stuart’s or Amie’s media is for what organisms
N. gonorrhoeae
Bordetella pertussis
SPS is used at what concentration as anticoagulant in clinical specimens?
0.025%
Long term storage of tissues or other specimens
-70C
Storage of serum for serologic studies
Frozen up to 1 week at -20C
Storage of normal specimens (urine, stool, viral specimens, swabs, catheters)
4C
Example of a critical value in Microbio is presence of what specimen in sterile site?
S. pyogenes
Example of a critical value in Microbio is presence of what specimen in genital site of pregnant woman at term?
S. agalactiae
HSV
Examples of significant pathogens (considered critical value in microbio)
Bordetella pertussis
Brucella spp.
Legionella spp.
In collection of abscess (wound), this substance is added if smear suggests mixed gram positive and gram negative flora
CNA (Columbia Colistin-Nalidixic medium)
Addition of CNA in abscess collection enhances growth of what organism
Gram +
For collection of deep abscess, (aerobic/anaerobic) transporter is used.
Anaerobic
In collection of blood or bone marrow aspirate, collection should be done at time of what type of episode?
Febrile
In collection of blood for blood culture, what is the volume for adults and infant px?
adult: >/= 20 mL/set
infants: 1-5 or 1-20 mL/set
Ratio of blood to medium for blood cultures
1:10
Best concentration of SPS for anticoagulation
0.025 to 0.030%
Most common concentration of SPS for anticoagulation
0.025-0.050%
Spx of choice for B. pertussis
Nasopharyngeal swab
NPS transportation to the lab should be:
<2 hrs/RT
Specimen recovered from NPS
H. influenzae
N. meningitidis
B. pertussis
MRSA
Bartlets criteria of acceptable sputum sample
<10 EC/LPF
> 25 PMNS/LPF
When testing for sputum, what spx is used for bedridden px
Gastric lavage
Specimen of choice for detecting nontuberculous mycobacteria and other opportunistic pathogens in px with immune dysfunction
Bronchial lavage, washings, and brushings
Spx of choice for mechanically ventilated adult px
Endotracheal aspirate (ETAs)
Sp. of choice for P. jiroveci/P. carinii testing
BAL
common causes of respiratory infection among immunosuppressed
P. jiroveci
P. carinii
Factor used for 1 uL inoculated loop in urine colony count
1000
Factor used for 10 uL inoculated loop in urine colony count
100
volume discarded in using catheter for urine collection
first 15 mL
Collection of urine for px with indwelling catheter
aspirate 5-10 mL of urine with needle and syringe
Specimen of choice for urine anaerobic culture
Suprapubic aspiration
Colony count that means patient has UTI?
> / = 100,000 CFU/mL
UTI cause in 90% of cases
E. coli
commonc cause of UTI among young females
S. saprophyticus
medium used for stool culture
Cary blair
common cause of diarrhea and gastroenteritis among children
Rotavirus
common cause of diarrhea among adults (Norwalk virus)
Norovirus
common cause of diarrhea among hospitalized px
antibiotic-assoc. diarrhea
C. difficile
ecofriendly fixative for O & P
PVA
Stool specimens containing these substances ar eunacceptable
MABBAN
Mineral oil
Antibiotic
Barium
Bismuth
Antimalarial agents
Non-absorbable antidiarrheal prep
How long before specimen be collected after antibiotic/barium administration?
5-10 days
or at least 2 weeks
Plating media for routine CSF analysis
BAP
CAP
Plating media for CSF analysis (shunt)
BAP
CAP
THIOL
CSF must be transported in the laboratory within:
15 mns
CSF storage conditions
<24 hrs incubate at 37C
EXCEPT VIRUSES: 4C for 3 days
Agent that causes increased eosinophils in CSF (fungal)
Coccidioides immitis
causative agent of bacterial meningitis in newborns - 1 month
S. agalactiae and Gram -
causative agent of bacterial meningitis in 1 month - 5 yo
H. influenzae (serotype b)
causative agent of bacterial meningitis in in 5 yo to 29 yo
N. meningitidis
causative agent of bacterial meningitis in >29 yo
S. pneumoniae
causative agent of bacterial meningitis in in infants, and immunosuppressed px
L. monocytogenes
Type of meningitis associated with normal lactate and glucose level
Viral
Type of meningitis associated with pellicle formation
Tubercular
Type of meningitis associated with increased WBC primarily neutrophils in CSF
Bacterial
Type of meningitis associated with positive limulus lysate test
Bacterial
Limulus lysate test rgt
Blood of horseshoe crab (limulus polyphemus)
+ rxn in limulus lysate test
clumping
Pellicle formation in tubercular meningitis can only be seen at what condition?
overnight refrigeration
most common cause of aseptic meningitis
Enterovirus
(no growth of fungi and bacteria upon culture)
resemble lymphocytes in CSF
C. neoformans
resemble myelin globules in sputum
Blastomyces
C. neoformans pattern in gram stain
classic starburst
In fungal meningitis, this is the causative agent that shows positive rxn in india ink
C. neoformans
Interference in latex agglutination for C. neoformans
Rheumatoid factor
Note: can be eliminated by boiling for 5 mns
CSF collection tubes:
Test for each tube?
- Chem/Sero (frozen)
- Microbio (RT/37C)
- Hema/cell count (refrigerated)
- Microbio
If only 1 tube of CSF collected, what is the order of priority of tests?
- Microbio
- Hema
- Chem