Micro High Yield Flashcards
6 bugs that don’t gram stain well
Treponema palladium (visualize on darkfield microscopy) Rickettsia (intracellular) Mycobacteria (acid fast) Mycoplasma (no cell wall) Legionella (sliver stain) Chlamydia (intracellular)
Bugs that stain with Giemsa stain
Chlamydia, Borrelia, Rickettsia, Trypanosomes, Plasmodium
Ziehl Neeson is a stain that correlates with what type of bacteria
Acid fast bacteria
Typical bug that stains with India Ink
Cryptococcus neoformans
Bugs that stain with silver stain
fungi, Legionella, H. pylori
What makes up Thayer-Martin Agar and what grows on it?
VPN (vancomycin, polymixin, nystatin) and it grows Neisseria
Agar that grows Clostridium diptheriae
Tellurite Lofflers
Fungi grow on this type of agar
Sabaroud dextrose
Legionella grows on this type of agar
Charcoal yeast with cysteine and iron
These bugs grow on Hektoen Enteric agar
Salmonella, Shigella, E. coli, Klebsiella
Vibrio cholera grows on
TCBS
Aminoglycosides are ineffective against these types of organisms
obligate anaerobes (AG’s need O2 to work)
Organisms that are catalase positive
Pseudomonas, Listeria, Aspergillus, Candida, E. coli, Staph A, Serratia
Toxins that inhibit protein synthesis
C. diptheria, Pseudomonas (both inactivate IL2); Shigella, EHEC (both inactivate 60s ribosome)
Toxins that increase cAMP
Vibrio cholera (increase Cl secretion-"rice water") Bacillus anthracis (edema) ETEC (labile-increases Cl secretion; stabile- decreases NaCl absorbtion) Bordetella pertussis (disables Gi, impairs phagocytosis)
Toxins that affect nerve transmission (cleave SNARE)
C. tetani- rigidity, lockjaw, no release of GABA or glycine
C. botulinum- flaccid paralysis, inhibits release of Ach.
toxins that lyse membranes
C. perfringens: alpha toxin, myonecrosis
Strep pyogenes: streptolysin O lyses RBC
Superantigens of Strep pyogenes and Staph A causing TSS.
Strep: Exotoxin A
Staph: TSST1
How to differentiate Beta hemolytic strep
Sensitive to Bacitracin: Strep pyogenes
Resistant to Bacitracin: Strep agalacticae
How to differentiate Alpha hemolytic strep
Sensitive to Optochin: Strep pneumo
Resistant to Optochin: Viridians strep
How to differentiate Coagulase negative strep
Sensitive to Novobiocin: Staph Epidermis
Resistant to Novobiocin: Staph Saprophyticis
Strep pneumo is the most common cause of these 4 diseases
MOPS: meningitis, otitis media, pneumonia, sinusitis
Strep bovis has a high association with
colon cancer
Common infections caused by and characteristics of Pseudomonas
Acronym: PSEUDOmonas Pneumonia (CF patients) Sepsis External otitis UTI Drug use Osteomyelitis (in diabetics) (hot tub folliculitis)
Differentiate between Salmonella and Shigella
Salmonella: H2S +
Shigella: H2S -
E. coli strain responsible for Traveler’s diarrhea (watery)
ETEC; labile and stable toxins. No mucosa invasion.
E. coli strain responsible for Hemolytic uremic syndrome (anemia, thrombocytopenia and renal failure)
EHEC O157:H7 virulence factor is the Shiga-like toxin (doesn’t ferment sorbitol unlike other E. colis!)
Most common cause of bloody diarrhea in kids, temperature it grows in and high yield clinical sequelae
Campylobacter jeujeni, grows at 42 degrees C, can cause Guillian Barre syndrome
H. pylori is the predominant cause of ulcers located where?
duodenum
Clinical consequence of Leptospira infection
Weil disease: jaundice, renal failure, liver and kidney shutdown, fever, hemorrhage, anemia
Sign of primary syphillis
painless chancre (tx: penicillin)
Signs of secondary syphillis
maculopapular rash on palms and soles, condyloma lata
Signs of tertiary syphillis
CNS manifestations: tabes dorsalis, ataxia, Argyll Robertson pupil
gummas (chronic granulomas), charcot joints
Description of Argyll Robertson pupil
Accommodates but doesn’t react (prostitute pupil)…GET IT???
Signs of congenital syphillis
Saber shins, saddle nose, CN VIII deafness, mulberry molars, “hutchinson teeth” (notched)
3 infections causing rash on palms and soles
Coxsackie A, Rickettsia (RMSF) and syphillis
4 fungal pneumonias in immunocompetent patients
- Histoplasmosis
- Blastomyces
- Coccioides
- Paracoccioides
Histoplasmosis is found in this geographic area and is associated with exposure to…
Mississippi/Ohio river valley, assoc with caves, bats, demolition projects. The fungi hides in the macrophages
Blastomyces is found in this geographic area, characteristics of what you see on microscopy
Mississippi and eastward, on microscopy you see broad based budding yeast.
Coccioides is associated with this geographical area and has what characteristic on microscopy?
Desert SW, especially after an earthquake. Microscopy shows Spherules containing endospores
Paracoccioides looks like this and is found where?
Captains wheel and found in Latin America
This cutaneous fungi looks like “spaghetti and meatballs” on KOH prep
Tinea Versicolor (Malasezzia furfur)
cigar-shaped fungi associated with vegetation, causes pustule/ulcer
Sporothrix -“rose gardener” disease
Protozoa causing malabsorption, flatulence, diarrhea, associated with campers and hikers.
Giardia Lambia: treated with metronidazole
Parasite causing bloody diarrhea, RUQ pain, liver abcess. Contains multinucleated cysts
Entamoeba histolytica
aka pinworm
Enterobius vermicularis
Nematode causing intestinal infections, knobby looking eggs
Ascaris lumbricoides
Trichuris trichuria (whipworm) causes what type of infection?
Intestinal: bloody diarrhea, football shaped eggs w/ operculated ends
Cestode responsible for neurocystisarcosis and intestinal infection from undercooked pork.
Taenia solium (tx: praziquantel)
Cestode that competes for B12 in intestines and causes anemia
Diphyllobothrium- from raw fish
Schistosome that causes portal HTN and liver issues
Schistosome mansoni
Schistosome that causes bladder CA
Schistosome hematobilium
Protozoa causing rapidly fatal meningioencephalitis. Found in freshwater lakes, enters cribiform plate.
Neigleria fowleri
Congenital toxoplasmosis infection triad found in babies
chorioretinitis, hydrocephalus, intracranial calcifications
Trypanosoma brucei is transmitted by what
tse tse fly (no amastigotes-those are only cruzi)
T. brucei causes this disease
African sleeping sickness: swollen lymph nodes, recurring fever, somnolence, coma.
Tx: suramin
Mode of Plasmodium transmission
Anopheles mosquito
Transmission of Babesiosis
Ioxodes tick (coinfects with Borellia)
What you see on microscopy in Babesiosis infection
Ring form (ddx: malaria) and Maltese cross (rules out malaria)
Tx for Babesiosis
Atovaquone and azithromycin
Transmission of Trypanosome cruzii
reduvid bug (amastigotes seen)
Clinical signs/sx of T. cruzi infection
Chagas disease: dilated cardiomyopathy, megacolon, megaesophagus
Paragnomius westermani causes
lung inflammation, TB like sx, hemoptysis (lung fluke)
Clinical sign of infection with Paragnomius westermani
“coffee bean shape” operculated eggs, “rusty” color.
recent ingestion of undercooked seafood/crab
Tx: praziquantel
List of live vaccines
VZV, smallpox, yellow fever, Sabin’s polio, MMR, Intranasal influenza, rotavirus
only DNA virus that is single stranded
parvovirus (part-of-virus -silly mnemonic)
only RNA virus that is double stranded
reovirus
RNA viruses:
Retrovirus, Togavirus, Flavivirus, Coronavirus, Hepevirus, Calicivirus, Picornavirus, Orthomyxovirus, Paramyxovirus, Rhabdovirus, Bunyavirus
7 DNA viruses:
Herpesvirus, Hepadnavirus, Adenovirus, Parvovirus, Papillomavirus, Polyomavirus, Poxvirus
High fever then when fever stops you get a rash
Roseola
Roseola is caused by what virus?
HHV6
How can you identify Herpes Simplex virus for diagnostic purposes? (just HSV1 and HSV2)
Tszank test and visualization of cowdry bodies
Hepadnavirus causes what disease?
Hepatitis B
Virus responsible for aplastic crisis in sickle cell patients, “slap cheek fever”/erythema infectiosum (5th disease) in kids
Parvovirus B19
Subtypes of HPV responsible for cervical cancer
HPV 16 and 18
Virus responsible for Progressive multifocal leukoencephaly in HIV patients
JC virus (polyomavirus)
Poxvirus is responsible for these diseases
smallpox and molluscum contagiosum
Reovirus (the only DS RNA virus) is responsible for what disease?
Rotavirus infection: gastroenteritis/diarrhea in children usually in winter months
4 viruses belonging to Picornavirus family
Poliovirus, Rhinovirus, Coxsackie virus, Hepatitis A (all fecal-oral)
The norwalk (norovirus) belongs to what family?
Calicivirus
What is the Norwalk virus responsible for?
viral gastroenteritis
5 Diseases caused by Flaviviruses
Hepatitis C, Yellow Fever, Dengue fever, West Nile and St. Louis encephalitis
Yellow fever is transmitted by
Aedes mosquito (fever, black vomit, jaundice)
Rubella belongs to what family of viruses?
Togavirus
Rubella infection (German measles) causes what?
Infant cataracts, lymphadenopathy, arthralgias, truncal rash starting at head and moving down
4 diseases caused by paramyxoviruses
- Parainfluenza: croup
- RSV: bronchiolitis in babies (tx: ribavirin)
- Measles
- Mumps
Clinical signs and most important sequelae of Measles
Cough, coryza, conjunctivitis, Koplik spots, Descending rash, biggest complication: subacute sclerosing panencephalitis
biggest concern of Mumps infection
orchitis–>sterility
Most high yield disease coming from the Rhabdovirus family
Rabies
Microscopic appearance of Rabies infection
“bullet shaped viruses”, Negri bodies in purkinje cells of cerebellum.
Clinical characteristics of Rabies
Photophobia, hydrophobia, paralysis, coma. Associated with animal bites. Virus migrates retrograde up the axons.
Negative stranded viruses: (Always Bring Polymerase Or Fail Replication)
Arenavirus, Bunyavirus, Paramyxovirus, Orthomyxovirus, Filovirus, Rhabdovirus
Process responsible for pandemics; Animal-human recombination
Antigenic shift
Process responsible for epidemics; minor changes based on mutations
Antigenic drift
Hepatitis type: Picornavirus, fecal/oral, Acute infection
HAV
Hepatitis type: DNA hepadnavirus, long incubation, acts as oncogene and predisposes to Hepatocellular carcinoma
HBV
Hepatitis type: Flavivirus, long incubation, increases risk for hepatocellular carcinoma, chronic infection, can cause cirrhosis
HCV
Hepatitis type: deltavirus, needs HBV to coinfect with.
HDV
Hepatitis type: Hepevirus, fecal/oral waterborne, high mortality in pregnant women
HEV
Marker that indicates Hep B infection
HBsAg
Marker that indicates immunity to Hep B
Anti-HBsAg
First antibody made to Hep B infection
Anti-HBcAg
Anti-HBcAg in acute/recent infection
IgM
Anti-HBcAg in prior exposure/chronic infection
IgG
Marker indicating active viral replication of HBV
HBeAg
Marker indicating low transmissibility of HBV
Anti-HBeAg
Serology profile for Acute HBV infection
HBsAg+, HBeAg+, Anti-HBc IgM
Serology profile for the “window period” of HBV
Anti-HBe+, Anti-HBc IgM+
Serology profile for chronic HBV, active
HBsAg+, HBeAg+, Anti-HBc IgG+
Serology profile for chronic HBV, inactive
HBsAg+, Anti-HBeAg+, Anti-HBc IgG+
Serology profile for Recovery of HBV
Anti-HBsAg+, Anti-HBeAg+, Anti HBc IgG+
Serology profile for vaccinated HBV
Anti-HBsAg+ ONLY
In viral hepatitis, which liver enzyme is greater?
ALT > AST
In alcoholic hepatitis, which liver enzyme is greater?
AST > ALT
Mutation in this cell surface protein can make one immune to HIV infection
CCR5 (T cell co-receptor)
Cause of bacillary angiomatosis in HIV patients (vascular proliferation, neutrophils)
Bartonella henslae
GI infection seen in AIDS patients with a CD4 < 200
Cryptosporidium parvum
CNS infection showing up when CD4 < 100
Toxoplasma gondii
CNS infection showing up with CD4<50
Cryptococcus neoformans
Infection causing retinitis, cotton wool spots, esophagitis, interstitial pneumonia, CD4<50
CMV
HHV8 causes this manifestation in AIDS pts
Kaposi sarcoma, (looks similar to bacillary angiomatosis but lymphocytes instead of neutrophils)
Diseases showing up at CD4 <200
Cryptosporidium, JC virus, Pneumocystis jirovechi
Diseases showing up at CD4 < 50
CMV, MAC, Cryptococcus
9 bugs causing food poisoning
Vibrio parahemolyticus, Vibrio vulnificans, Bacillus cereus, Staph A toxin, Clostridium perfringens, Clostridium botulinum, EHEC, Salmonella, Campylobacter jeujeni
Causes of bloody diarrhea
C. jeujeni, Salmonella, Shigella, EHEC, EIEC, Yersinia, Entamoeba histolytica
Causes of watery diarrhea
ETEC, Vibrio cholerae (rice water), C. diff, C. perfringens, Giardia, Cryptosporidia, Rotavirus, Norwalk virus
Pneumonia in neonates <4 wk
- Group B strep (agalacticae) and 2. E. coli
Pneumonia in children (1 mo-18 years)
RSV, Mycoplasma, Chlamydia, Strep pneumo
Pneumonia in ages 18-40
Mycoplasma, Chlamydia pneumoniae, Strep pneumo
Pneumonia in adults 40-65
Strep pneumo, H. influenza, Anaerobes (aspiration), viruses
Pneumonia in elderly >65
Strep pneumo, influenza
Nosocomial pneumonia causes
Staph A, Gram negative rods, pseudomonas (ventilator)
Pneumonia in IVDU
S. pneumo, Klebsiella pneumo, Staph A
Pneumonia in CF patients
Pseudomonas and Staph A
Post viral pneumonia
1: Staph A
Newborn meningitis
Strep agalactiae, E. coli, Listeria
Childhood meningitis
Strep pneumo, Neisseria meningitidis, H. inf type B, enteroviruses
Meningitis in young adults
Teens: #1 is Neisseria meningiditis
strep pneumo, coxsackie virus
Meningitis in elderly
Strep pneumo, Gram negative rods, Listeria
CSF profile in bacterial meningitis
Pressure increased, PMN’s, Protein increased, Glucose decreased
CSF profile in viral meningitis
normal pressure, lymphocytes, normal to decreased protein, normal glucose
CSF profile in fungal meningitis
increased pressure, lymphocytes, increased protein, decreased glucose
1 cause of osteomyelitis
Staph A
Osteomyelitis in sickle cell
Salmonella
Osteomyelitis in IVDU
Pseudomonas
1 cause of UTI
E. coli
UTI in sexually active young girls (still 2nd to E. coli)
Staph saprophyticus
UTI associated with struvite stones (staghorn calculi)
Proteus
UTI associated with catheters
Staph Epi
vesicular rash on palms, soles and buttocks, in children
Coxsackie A (hand/foot/mouth)
Painful penile chancre and lymphadenopathy
Haemophilus ducreyi
most common bacterial STD in US
Chlamydia serotypes D-K
HPV subtypes associated with genital warts
HPV 6 and 11
Strongyloides stercoralis, AKA Threadworm is transmitted how? Where does it go from there?
Transmitted by penetration of the skin and from there it goes to infect the pulmonary system, gets coughed back in and ingested and infects GI. Therefore sx are: local itching at feet, cough, diarrhea, vomiting etc.
What type of HS reaction is Grave’s disease?
Type II non cytotoxic
typically presents in crowded conditions, in the webs of hands and feet, and has linear burrows accompanied by excoriation
Sarcoptes scabeii
DOC for Giardia
Metronidazole
Active TB likes what part of the lung?
apex (the Ghon complex primary infection is assoc with the base)
DOC for Lyme disease in kids <8
Amoxicillin (Doxy is the DOC older than this…remember Doxy is used in kids ONLY in RMSF)
Intracellular finding in Klebsiella granulomatous infections (genital ulcers)
Donovan bodies
Resistant Pasteurella is treated by the combo of Impinem/cilastatin. What are their MOA’s?
Imipinem is a carbapenem beta lactam that is beta lactamase resistant.Cilastatin inhibits renal dehydropeptidase I which by doing that decreases the excretion rate of Impinem.
4 gram positive rods
Bacillus, Corneybacterium, Listeria, Clostridium
type of hemolysis that is green
alpha (strep viridians and strep pneumo)
MOA of C. tetani toxin
prevents release of glycine from Renshaw cells in the spinal cord
2 bacterial toxins that act by inhibiting EF-2
Pseudomonas and C. diphtheriae
capsule is encoded by what bacterial structure?
K antigen
virulence factors of H. influenzae?
capsule and IgA protease
Lab test for anti-rickettsial antibodies
Weil-Felix (this can cross react with proteus)
what 5 things can give false positive VDRL test?
Viral infections (mono and hepatitis), Drugs (narcotics), Rheumatoid arthritis, Lupus, Leprosy
antimicrobial that inhibits 50s peptidyl transferase
chloramphenicol
antimicrobial that binds 50s and inhibits translocase
macrolides
antimicrobial that blocks 50s peptide bond formation
clindamycin
antimicrobial that blocks entry of aa-tRNA to the 30s complex
Tetracyclines
antimicrobial that bind to 30s and block initiation complex formation
Aminoglycosides
MOA of Rifampin
inhibits DNA dependent RNA polymerase
6 uses for Metronidazole
Giardia, BV (gardenella), Trichomonas, C. diff, H. pylori, Entamoeba
6 DNA viruses
Herpesvirus, Hepadnavirus, Adenovirus, Poxvirus, Polyomavirus, Parvovirus
Only DNA virus that is single stranded
Parvovirus (also naked)
only RNA virus that is double stranded
Reovirus (rotavirus)
4 families of segmented viruses
Arenavirus, Orthomyxovirus, Bunyavirus, Reovirus
only diploid virus class
Retrovirus
virus causing councilman bodies to show up in liver
yellow fever virus (aedes mosq)
Virus associated with Dane particles
Hep B
virus that can cause intussusception due to hyperplasia of Peyer patches
Adenovirus
induction of this TF during immune response leads to activation of transcription of HIV proviral DNA
nuclear factor kappa B
symptoms of prion disease
rapidly progressing dementia, psych disturbance, cerebellar symptoms
MOA of acyclovir
activated by thymidine kinase, inhibits viral DNA polymerase
MOA of foscarnet
pyrophosphate analog, inhibits viral DNA polymerase
rose gardener disease with ascending lymphadenitis
sporothrix schenkii, tx: potassium iodide
transmitted by tsetse, shows antigenic variation
Trypanosoma bruceii
macrophages containing amastigotes, aka kala-azar
Leishmania donovani
bloody diarrhea with flask shaped ulcers, liver abcesses and trophozoites in stool
entamoeba histolytica
fever, periorbital edema, myositis after ingesting raw pork
Trichenella spiralis (tx thiabendazole)
undercooked pork larval worm, causes mass lesions in brain
Taenia solium (praziquantel, albendazole)