Lesson 1 APPLIED MOLECULAR BIOLOGY/GENETICS Flashcards
in an attempt to develop a vaccine against pneumonia
Frederick Griffith
he discovered that bacteria could change from being avirulent to virulent
Frederick Griffith
- smooth colony
S cells/ strain
(encapsulated and virulent)
S cells/ strain
Pathogenic
S cells/ strain
- rough colony
R cells/ strain
(non-encapsulated and avirulent)
R cells/ strain
Non-pathogenic
R cells/ strain
Griffith called the
protein “transforming principle”
Today, what he observed was DNA of the S cells survived the heating process and taken up by the R cells.
Frederick Griffith
The R cells formed now a
protective capsule
- former name of DNA
Protein
in their study they showed that the “transforming principle” Griffith discovered was DNA
*Oswald T. Avery
*Colin M. MacLeod
*Maclyn McCarty
DNA was confirmed further through the study of
Martha Chase and Alfred Hershey.
They used bacteriophage (virus) to determine if the genetic material they inject in E.coli is DNA
Martha Chase and Alfred Hershey.
Contains all the genetic information on both prokaryotic and eukaryotic cells
Deoxyribonucleic acid
The genetic information is transferred from parent to daughter cells by
DNA replication
The first accurate counting of chromosomes are made.
Walther Flemming
Eduard Strasburg
Edouard van Beneden
Cell division is observed.
Walther Flemming
Eduard Strasburg
Edouard van Beneden
Terms chromatin, mitosis, cytoplasm, nucleoplasm, prophase, and metaphase are coined
Walther Flemming
Eduard Strasburg
Edouard van Beneden
DNA replication is
semi-conservative
That means that when it makes a copy, one half of the old strand is always kept in the new strand
semi-conservative
This helps reduce the number of copy errors
semi-conservative
semi-conservative occurs during interphase specifically [?] of the cell cycle
S phase
describes the transfer of genetic information within a cell
Central dogma
The process of DNA → RNA is termed
transcription
is used as a template for ribonucleic acid (RNA) synthesis
DNA
One strand of DNA is copied into messenger RNA (mRNA) by
RNA polymerase II
The process of RNA → Protein is termed
translation
A molecule of mRNA is read by ribosomal machinery in the [?], resulting in the production of proteins that perform cellular functions.
cytoplasm
is the study of biology at a molecular level.
Molecular biology
The field overlaps with other areas of
biology and chemistry, genetics, microbiology and virology
Understanding the interactions between [?] as well as learning how these interactions are regulated
DNA, RNA and protein biosynthesis
Applying in diagnosis the process of [?] of the genetic material
replication, transcription and translation
Integration of the concepts in molecular biology with clinical laboratory techniques.
DIAGNOSTIC MOLECULAR BIOLOGY / MOLECULAR BIOTECHNOLOGY
The completion of the [?] has opened a myriad of opportunities to create new medicines and treatments
human genome project (1990-2003)
The vaccine spurs healthy cells to produce [?] that potent immune response
viral proteins
They described the basic structure of DNA double helix (spiral) shaped with its sugar phosphate backbone on the outside and its bases on inside; the two strand of helix run in opposite direction and are antiparallel to each other stabilized by hydrogen bonds between the bases (glue)
*James Watson *Francis Crick
Double helix can be denatured to single-stranded DNA through exposure to heat (?) or chemicals, and then renatured through cooling (?) or removal of chemical denaturants to allow the DNA strands to renature or anneal
94-98°C
54-55°C
Laboratory technique used to make millions of copies of a particular region of DNA.
POLYMERASE CHAIN REACTION
The type of gene the researcher is interested in may be a genetic marker used by forensic scientists to match crime scene DNA with suspects.
POLYMERASE CHAIN REACTION
DNA amplified by PCR may be sent for sequencing, visualized by gel electrophoresis, or cloned into a plasmid for further experiments.
POLYMERASE CHAIN REACTION
invented the PCR in 1985
Kary Mullis
Used in medical research and forensie science
PCR
: use an enzyme which converts RNA to DNA
Reverse Transcription (RT)
: common fechnique for repeatedly amplifying/ copying a specific segment of DNA to crease enough copies for a signal to be detected
Polymerase Chain Reaction (PCR)
: the amount of light produced by the DNA copies will be counted
Real time or quantitative (rt or q)
discovered Thermus aquaticus bacteria found in Yellow stone National park
Thomas Brock
Its DNA polymerase is very heat-stable and because ideal for PCR.
Taq Polymerase
As we’ll see, high temperature is used repeatedly in PCR to denature the template DNA, or separate its strands.
Taq Polymerase
COVID-19 Real Time PCR Kit
Detect the presence of 2 genes in the virus:
ORFlab and N gene
The signals can be amplified and detected based on the designed Taqman probes of the target genes during the amplification process
COVID-19 Real Time PCR Kit
Infested by “corn borers” or worm-eating corn
BT-corn
resistant to “corn borers”
BT (Bacillus thuringiensis) corn
Genetic engineered - cyrstal gene/corn
BT (Bacillus thuringiensis) corn
Corn borer’s gut is poisoned
BT (Bacillus thuringiensis) corn
Uses less pesticides
BT (Bacillus thuringiensis) corn
Better or good for the environment
BT (Bacillus thuringiensis) corn
No side effects
BT (Bacillus thuringiensis) corn
attacks bacterial cells
bacteriophage
Injects their viral dna or rna to a bacterial cell, then it multiplies inside the bacterial cell
bacteriophage
bacterial cell become the host cell
bacteriophage
Two groups of bacteriophage
Protein
DNA
- bacteriophage exposed in “Sulfur-35 radioactive label”, which lights up inside the cell
Protein
- bacteriophage exposed in “Phosphorus-32 radioactive label”, which lights up inside the cell
DNA
Bacterial cell -
E. Coli
is condensed in the nucleus, but some are found in the mitochondria
DNA
- double spiral structure; Long
Double helix
Coiling of DNA produces - [?]
nucleosome - chromatin - chromosome
- condensed or organized form of DNA
chromosome
Contains all genetic information (genes: 50% from mother, 50% from father)
DNA
DNA copies itself
DNA replication
- way of copying DNA outside the body
PCR
Virus Structure and Classification
Prokaryotes
Covid19 –
RNA; enveloped virus
Can be killed thru hand-washing
DNA
Soap/alcohol can breakdown the lipid-covering
DNA
DNA:
Herpes, Hepadna, Hepa, Pox, Papova, Adeno, Parvo
RNA:
Paramyxo, Orthomyxo, Rhabdo, Picorna, Retro
Pair of chromosomes
46 chromosomes (32 pairs)
Semiconservative replication
(old strand)
(new strand)
Blue
Orange
DNA unwinds
1 pair for the first daughter cell and another for the second
Cell Cyle
Mitosis
G1 (growth)
S phase
G2
— short portion
Mitosis
- large portion
G1 (growth)
— DNA replication
S phase
- preparation for mitosis
G2
Transcription —
nucleus
Translation -
cytoplasm (ribosome)
– accomplished after 13 years
Human Genome Project
nitrogen bases in the body
3 B
genes
20-25,000
Each gene contains [?] bases
3,000
Some nitrogenous bases turned into
“junk DNA”
[?] are the same; [?] is unique
99.9%
1%
– diagnosed w/ BRACA gene (breast cancer gene); more prone to breast and ovarian cancer
Anglina Jolie
Made an mRNA from the spike protein from the corona virus
Tyler and Moderna vaccine
Ribosome produces spike protein, followed by Ab production
Tyler and Moderna vaccine
Affordable way to diagnose genetic diseases
NEWBORN SCREENING
5 big drops of blood from a heel puncture
NEWBORN SCREENING
PARTS OF DNA
Sugar phosphate
Nitrogenous bases
Hydrogen bonds
- backbone; ladder-like
Sugar phosphate
- staircases
Nitrogenous bases
– serves as a glue between the two
Hydrogen bonds
PHASES OF DNA DENATURATION
Denaturation, Annealing, Extension
Overview of the PCR test
- Sample collection (Storage: 2-8oC) – most common; placed in a VTM (viral transport medium)
- Specimen inactivation: lysis and viral RNA extraction
- Reagent mix preparation
- RT: RNA to cDNA
- Amplification: Thermal cycler/Thermocycler
- Detection