Lecture Exam 1 Flashcards
Phylogeny
evolutionary history of a group of organisms, as represented by a phylogenetic tree or dendrogram
Systematics
study of evolutionary relationships among different taxa and their classification
Taxonomy
describing and classifying species
Clade
group of organisms evolved from a common ancestor
MRCA
most recent common ancestor of a group of organisms
Homology
similarity of structures due to inheritance from a common ancestor
Synapomorphy
shared, derived traits or features
Symplesiomorphy
shared, ancestral traits or features
Homoplasy
similarity of character states due to similar function, not inheritance
Monophyly
a group of organisms sharing a common ancestor
Paraphyly
group including the common ancestor, but not all descendants
Polyphyly
group derived from more than one common ancestor
Anagenesis
evolution along branches (of a phylogeny)
Cladogenesis
evolution (speciation) at nodes (of a phylogeny)
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Kingdom
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Phylum
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Class
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Order
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Family
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Genus
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Species
Blastula
early developmental stage of animal embryo when it is a hollow ball of cells
Gastrula
later embryonic stage when the blastula invaginates to form an inner gut tube
Gastrulation
process by which blastula invaginates to become a gastrula
Archenteron
early or rudimentary gut tract of an embryo
Blastopore
opening of the central cavity of an embryo during gastrulation
Blastocoel
central cavity of the blastula
Ectoderm
external tissue layer of embryo; gives rise to epidermis and nerves in adults
Endoderm
innermost tissue layer of embryo; gives rise to gut lining + organs
Mesoderm
middle embryonic tissue layer; gives rise to diverse organs like muscle
Diploblastic
animals having only two embryonic tissue layers (many non-deuterostomes)
Triploblastic
animals having three embryonic tissue layers (like deuterostomes)
Enterocoely
formation of coelom from out-pocketings of the archenteron
Notochord
rod-like, rigid tube supporting the skeleton of chordates
Dorsal hollow nerve cord
central nervous system structure dorsal to the notochord
Post-anal tail
tail that extends past the anus; used for locomotion (+ burial, in some cases)
Pharyngeal pouch/slits (pharynx)
feeding structure in chordates, used like a sieve for filtering
Endostyle
longitudinal, ciliated groove in pharynx; used to gather food (homologous w/ thyroid)
Paedomorphosis
retention of larval features in mature adults
Peramorphosis
delayed maturation with continued growth
Cephalization
concentration of sense organs at the anterior (i.e., head) of the body
Cranium
part of the skull that encases and protects the brain
Hermaphroditic
a sexually reproducing organism that produces both male and female gametes
Hemal & Neural Arches
ventral + dorsal spinous projections of the vertebrae
Vertebral Centra
the ossified central section of the vertebrae
Arcualia
primordial or rudimentary vertebrae, made of cartilage
Synarcual
fused series of vertebral elements
Heterocercal tail
tail in which the vertebral column extends into one lobe (usually the upper)
Myomeres
blocks of skeletal muscle arranged in sequence along the flanks
Semicircular canals
interconnected tubes located in the inner ear, used to sense movement and orientation
Ammocoete larvae
juvenile stage of lamprey, resembles a cephalochordate
Gill (branchial) arches
the cartilaginous or bony skeleton supporting the gill filaments
Mandibular cartilage
the lower 1st branchial (gill) arch, becomes the lower jaw
Palatoquadrate cartilage
the upper 1st branchial (gill) arch, becomes the upper jaw
Spiracle
remnants of the 1st gill slit, used for ventilation in benthic fishes like rays
Operculum
bony or cartilaginous plate which covers the gills in ratfishes, acanthodians, and bony fishes
Placoid scales
tooth-like odontodes that cover the body surfaces of cartilaginous fishes
Ceratotrichia
stiff collagenous filaments which support the fins of cartilaginous fishes
Lepidotrichia
the bone-reinforced collagenous fin filaments which comprise the fins in bony fishes
Oviparous
egg-laying
Viviparous
live-bearing
Ovoviviparous
embryos that develop inside eggs that remain in the mother’s body until they are ready to hatch
Choanae
internal opening into the mouth, connecting to the external nostrils (nares)
Cosmoid scales
scales with inner bone layer and outer dentine (cosmine)
Diphycercal tail
symmetric tail fin in which the vertebral column extends to the tip
Labyrinthodont teeth
teeth with a depply-folded enamel structure
Tiktaalik
fossil sarcopterygian fish resembling modern amphibians and tetrapods
Chiridium
muscular limb with well-defined joints and digits
Acanthostega & Ichthyostega
early amphibian-like tetrapods
Pectoral- & pelvic- girdles
shoulder and hip skeleton supporting the fore- and hind-limbs
Cutaneous respiration
respiration using the skin
Metamorphosis
transformation process from an immature juvenile to an adult form
Fossorial
organisms which burrow and/or spend their life underground
saltation
jumping or hopping form of locomotion
Typanum
membrane comprising the eardrum, used to sense sound in air
Temporal fenestrae
lateral openings in the skulls of Amniotes
Bipedalism
walking erect on two legs
Carapace & plastron
top and bottom of a turtle’s shell, respectively
Endothermy
maintaining a constant internal temperature
Matrotrophy
where parent organisms provide a nutrient subsidy to developing young
Mammary glands
milk producing glands in mammals
sebaceous glands
sweat producing glands in mammals
marsupium
the pouch in marsupials
placenta
organ that provides oxygen and nutrients to a fetus, while removing wastes
development
change in shape over an organisms lifespan
growth
change in size over an organisms lifespan
ontogeny
change in shape and size over an organisms lifespan
Ectoderm, endoderm, mesoderm
3 primary germ layers
cleavage
process by which the zygote undergoes cell division, forming the embryo
zygote
fertilized egg
blastula
animal embryo at a stage where the embryo is a hollow ball of cells
gastrula
a hollow cup-shaped embryo having three layers of cells
gastrulation
process where an embryonic blastula invaginates to form a gastrula
Neurulation
the process of transforming the flat neural plate into a neural tube
Extraembryonic
tissues external to the embryo, provision the actual growing organism
Organogenesis
organ formation
microlecithal
having a small amount of yolk
mesolcithal
having a moderate amount of yolk
macrolecital
having a significant amount of yolk
coelom
body cavity
blastopore
the opening of the central cavity of an embryo
holoblastic
complete cleavage that divides the whole egg into distinct and separate hemispheres
meroblastic
incomplete cleavage as a result of the presence of an impeding mass of yolk material
Mesenchyme
network of loosely-connected cells
somites
clumps of condensed mesoderm
Endoderm gives rise to
digestive tract, glandular tissues
Mesoderm gives rise to
notochord, muscles, connective tissues
Ectoderm gives rise to
epidermis, nerves, sensory systems
Ectoderm (neural crest) gives rise to
pigment, cartilage and bone
Ectoderm (neurogenic placodes) gives rise to
neurons
Vertebrate synapomorphies
Myomeres, eyes & brain, vertebrae, true head, neural crest & neurogenic placodes, muscular pharynx
Olfactores taxa
Urochordata and Vertebrata
Urochordata
Tunicates (sea squirts)
Chordata taxa
Cephalochordata, Urochordata, Vertebrata
Cephalochordata
Amphioxus (lancelets)
Ambulacraria taxa
Echinoderms and Hemichordata
Echinoderms
sea stars
Hemichordata
acorn worms
Deuterostomia taxa
Ambulacraria and Chordata
Olfactores synapomorphies
Primitive myomeres, striated heart tissue, and neural crest
Chordata synapomorphies
Notochord, dorsal hollow nerve cord, endostyle, pharyngeal slits, post-anal tail
Deuterostomata synapomorphies
Radial cleavage, enterocoely, anus forms first
Phylogenetic branch
Estimates time of evolutionary relationships between units
Phylogenetic tip
Represents species or taxa that descended from the ancestral nodes
What does the traditional deuterostome phylogeny look like?
Hemichordata were more closely related to chordata than to echinoderms, and cephalochordata were more closely related to vertebrates than urochordata
Why are Hemichordata (acorn worms) not chordates
Acorn worms have a nerve cord, coelom, and pharyngeal slits. They lack a notochord however
Which traits are lost in adult Urochordates?
Post-anal tail, notochord, and dorsal hollow nerve cord
Palatoquadrate cartilage
dorsal part of the anterior gill arch; evolved into upper jaw
Mandibular cartilage
ventral part of the anterior gill arch; evolved into lower jaw
Notochord
Provides structure in chordates
Endostyle
Secretes mucus to trap food particles in chordates
Dorsal hollow nerve cord
Central nervous system in chordates
Post-anal tail
Provides locomotion in chordates
Vertebral column
Ossified notochord; provides stronger attachment point for muscles, rigid and elastic, arches protect nerve cord and arteries (vertebrates)
Cranium
Clustering of sensory organs at head, brain protection (vertebrates)
Neural crest
Gives rise to cranium and teeth (vertebrates)
Neurogenic placodes
Form sensory structures (vertebrates)
Complex eyes and brain
increased sensitivity to stimuli and better processing (vertebrates)
Muscular pharynx
Allows for pumping of water, led to suction feeding and more efficient ventilation (vertebrates)
Gills
More efficient ventilation (vertebrates)
Pharyngeal slits
Slits used for absorption of nutrients from filter feeding (chordates)
Hagfish (Myxini)
One nostril, single semicircular canal, isosmotic, hermaphrodites
Lamprey (Petromyzonti)
2 nostrils, 2 semicircular canals, primitive vertebrae, hyperosmotic, ammocoete larvae
What did Placoderms start?
First gnathostomes, internal fertilizers, paired fins, bony plates
Cyclostomata
Jawless fish - Myxini (hagfishes) and Petromyzonti (lampreys)
Gnathostomata
Jawed fish - Osteichthyes and Chondrichthyes
Osteichthyes
Bony fish; Actinopterygii and Sarcopterygii
Chondrichthyes
Cartilaginous fish; sharks, rays, and chimaeras
Actinopterygii
Ray-finned fish; (Neopterygii and Chondrostei) and Cladistia
Neopterygii
Holostei and Teleostei; gars and bowfin
Teleostei
fish with teleost scales
Sarcopterygii
Lobe-finned fish; Actinistia and Rhipidistia
Actinistia
Coelocanth
Rhipidistia
Dipnoi (lungfish) and Tetrapods
Dipnoi
Lungfish
Tetrapoda
Acanthostegidae, Ichthyostegidae, and Neotetrapoda
Neotetrapoda
Amphibia and more derived
Amphibia
Lisssamphibia and extinct Amphibia
Lissamphibia
Gymnophiona and Batrachia
Batrachia
Anura and Caudata
Gymnophiona
Caecilians
Anura
Frogs and Toads
Caudata
Salamanders
Reptilomorpha
Amniotes and all more derived
Amniota
Sauropsida and Synapsida
Sauropsida
Testudines and Diapsida
Testudines
Turtles
Diapsida
Lepidosauria and Archosauromorphs
Lepidosauria
Sphenodon and Squamata
Squamata
Lizards and snakes
Eutheria
Placental mammals
Metatheria
Marsupial mammals
Theria
Metatheria and Eutheria
Monotremata
Platypus and Echidna
Mammalia
Mammals
Archosauromorphs
Aves and Dinosauria
Chondrichthyes synapomorphies
Cartilage skeleton, placoid scales, large livers, heterocercal tail, ceratotrichia, internal fertilization, spiracle, serial tooth replacement
Cartilaginous skeleton
allows for higher mobility
Internal fertilization
ensures fertilization occurs
Fatty liver
controls buoyancy
Tooth replacement
allows for the loss of teeth
Osteichthyes synapomorphies
Bony skeleton, scale armor, swim bladder, lepidotrichia, bony operculum
Scale armor
increased protection
Swim bladder
buoyancy control
Bony operculum
protects gills
what bones did early tetrapods lose?
Operculum, disconnection of shoulder from skull
Acanthostegidae
exhibited enlarged notochord and loss of dorsal scales
Ichthyostegidae
Exhibited robust pectoral and pelvic girdles, vertebral regionalization, and robust ribs
What unites Lissamphibia?
Must lay eggs in water
Amniotic and Cleidoic egg function
Allowed eggs to be laid on land without drying out
Why are traditional ‘reptiles’ not a clade?
Because birds would need to be included; clade is called Sauropsida
Examples of extinct reptiles
Mesosaurs, Pterosaurs
Characteristics of Sauropsids
keratinized epidermis, single inner ear bone, more regionalized spine, feet rotated under body
Squamate lineages
Serpentes (snakes), Scincomorpha (skinks), Gekkota (geckos), Amphisbaenia (burrowing worm-like reptiles)
Uniting traits of squamates
Hemipenes - paired copulatory organs specialized for internal fertilization
Mammalia characteristics
Mammary glands, hair, whiskers, sebaceous glands, 3 inner ear bones, precise dental occlusion
Monotremes traits
Egg-laying (oviparous), lack nipples and external ears
Metatherian traits
Marsupials; marsupial pouch, premature young
Eutherian traits
Placentals; placenta, longer gestation periods
Major eutherian lineages
Afrotheria, Xenarthra, Euarchontoglires, Laurasiatheria
In which clades has endothermy evolved?
Theropods (birds and some dinosaurs) and mammals
Aves synapomorphies
feathers, endothermy, hollow bones, bipedal