Lecture 6b Flashcards

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1
Q

How do we obtain transgenic animals?

A

We inject the genes into fertilized eggs, allowing for the genes to integrate into the chromosome.

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2
Q

Once we have several independently derived transgenic animals, what do we need to do?

A

We have to “select out” the animals that express the gene in a way that is what we wanted.

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3
Q

What is the b-lactoglobulin promoter?

A

A promotor that is only functional in mammary cells (which produce breast milk) so any gene products will be secreted into the milk.

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4
Q

If we wanted to express a human protein in animal milk, what do we need to do to the plasmid vector?

A

We need to insert the human hormone gene behind the b-lactoglobulin promotor in the plasmid.

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5
Q

If we wanted to express a human protein in animal milk, what do we need to do with the plasmid vector once it has the human hormone gene in it?

A

We take the plasmid vector and inject it into a sheep oocyte. We then implant this oocyte into a female sheep, which will give birth to transgenic sheep offspring.

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6
Q

If we wanted to express a human protein in animal milk, what do we need to do when we have the transgenic sheep offspring?

A

We obtain milk from the female transgenic sheep. The milk will contain the human hormone. Then, we can purify the hormone from the milk.

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7
Q

Where is Insulin produced?

A

B-cells in the pancreas

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8
Q

What does Insulin do?

A

Regulates the uptake of glucose into fat and muscle cells.

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9
Q

Who needs Insulin?

A

People with insulin-dependent diabetes cannot synthesize enough insulin. This is Type 2 diabetes.

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10
Q

What are sources of Insulin?

A

Human cadavers (expensive) and cows (expensive + possible allergies)

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11
Q

After fertilization, do the sperm and egg nuclei fuse right away? Why is this important?

A

No. This is important because we can microinject zygotes with CRISP-Cas before the gametes have fused and produce mutant mice.

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12
Q

Why do we need to secrete proteins from the cell?

A

Some of them have to carry out their function outside of the cell.

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13
Q

In bacteria and archaea, where do proteins need to be targeted to for secretion?

A

The plasma membrane

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14
Q

In eukaryotes, where do proteins need to be targeted to for secretion?

A

Endoplasmic reticulum membrane

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15
Q

In eukaryotes, describe how a protein is secreted?

A

If a protein that is being synthesized has an endoplasmic reticulum (ER) signal sequence, an RNA-protein complex called the signal recognition particle (SRP) binds to it. The binding of the SRP causes translation to pause and the SRP binds to a protein in the ER membrane next to a channel. The SRP lines up the amino acid chain with the channel, then the SRP lets go of the chain for it to travel through the channel.

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16
Q

What was discovered by accident with short double stranded RNAs?

A

Short double stranded RNAs could reduce the expression of a gene more effectively than annealing a short single-stranded RNA.

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17
Q

What was the relationship of the double stranded RNA to the mRNA?

A

One of the strands was identical to the mRNA and other was complementary to the mRNA.

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18
Q

What do we call the short double stranded RNAs?

A

Short interfering RNAs (siRNAs)

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19
Q

Describe the process of using siRNAs to reduce gene expression.

A

1) A double stranded siRNA and several proteins make up the RISC complex.
2) One of the siRNA strands is removed, activating the RISC complex.
3) The siRNA strand brings RISC to target mRNAs that share the complementary sequence through Target mRNA Recognition.
4) The RISC complex cleaves the target mRNA, allowing for sequence-specific gene silencing.

20
Q

What is the process of using siRNAs to reduce gene expression called?

A

RNA interference

21
Q

What if we don’t want to entirely get rid of a gene expression?

A

There are different siRNA sequences that reduce gene expression by different amounts.

22
Q

What is reducing, rather than abolishing, gene expression called?

A

‘Knocking down’ gene expression

23
Q

What do MicroRNA genes do?

A

These genes encode hairpin RNAs that are then processed to produce miRNAs.

24
Q

What are miRNAs?

A

Naturally made by the body 20-25-bp siRNAs

25
Q

What is the difference between siRNAs and miRNAs?

A

siRNAs are made artificially in the lab and miRNAs are naturally made by the body.

26
Q

Do MicroRNAs produce proteins?

A

No!

27
Q

Describe the process of producing an miRNA?

A

The miRNA gene is transcribed to produce a pre-miRNA that folds into a hairpin. This is made smaller and exported from the cell. It is then cut into a double-stranded RNA about 20-25 bp long

28
Q

What does the miRNA do?

A

A RISC complex is formed and one of the RNA strands is degraded. The success of preventing mRNA translation depends on what strand gets degraded. RISC finds the target mRNA and complementary binding occurs for cleaving.

29
Q

What do we do if we want to reduce, but not eliminate gene expression?

A

Add transgenes expressing short hairpin RNAs (shRNAs).

30
Q

What is the process of reducing gene expression with shRNAs?

A

1) Try out a few shRNAs to find desireable gene expression reduction amount.
2) Biotech companies synthesize genes that will encode hairpin RNAs with the sequence of interest.
3) Clone these transgenes into the ROSA26 locus of cells.

31
Q

What is site-specific recombination?

A

Two DNA segments with little/no homology align themselves at specific sites and crossover occurs through specialized enzymes.

32
Q

Are the sites for site-specific recombination long or short?

A

The sites are relatively short DNA sequences that provide a specific location for recombination.

33
Q

Who is site-specific recombination used by?

A

1) Certain viruses when they replicate their genomes
2) Certain viruses and transposons, to insert their DNA into host cell DNA
3) The mammalian immune system, to generate a diverse array of antibodies.

34
Q

Give an example of someone who uses site-specific recombination.

A

Bacteriophage P1

35
Q

How does bacteriophage P1 replicate?

A

By a ‘rolling circle’ mechanism in which a single strand is pulled out of the circular chromosome, causing the other to roll.

36
Q

What is the role of cre recombinase?

A

It catalyzes site-specific recombination between LoxP sites to produce circular single-copy genomes.

37
Q

What can we use LoxP sequences for?

A

To make a conditional gene

38
Q

What is a conditional gene?

A

The same gene as was present before but now it has LoxP sites on either ends of it. When we have cre recombinase present, we will get homologous recombination between the 2 LoxP sites, which will then give us an extra chromosomal circle.

39
Q

What happens to the extra chromosomal circle?

A

It does not have a centromere, so it will get lost and now we just have a null/conditional allele.

40
Q

Relative to conditional genes, what does cre recombinase do?

A

Cre recombinase deletes a conditional gene.

41
Q

What are tissue-specific promoters?

A

Promoters that are only expressed in one tissue.

42
Q

What is an example of a tissue-specific promoter?

A

The p56lck gene is only expressed in the thymus.

43
Q

Where would we insert transgene coding for cre recombinase?

A

Behind a tissue-specific promoter into the ROSA26 locus.

44
Q

What is a conditional knockout?

A

Using cre recombinase, we can delete a gene only in the thymus/T cells but no where else in the rest of the body.

45
Q

What is another way to do a ‘knock down’ in only certain tissues?

A

We can express a shRNA gene behind a tissue-specific promoter.

46
Q

What is directional orientation?

A

Inserting DNA sequences into a plasmid vector with the correct orientation.