LaCount Lec 1 Flashcards

1
Q

what are single gene disorders?

A

recessive, dominant, autosomal, sex-linked

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2
Q

what is recessive

A

Observed in absence of normal allele (homozygous)

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3
Q

what is dominant

A

Observed in presence of normal allele (heterozygous)

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4
Q

what is autosomal

A

chromsomes 1-22

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5
Q

what is sex-linked

A

x and y chromosomes

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6
Q

what are Mendelian traits

A

autosomal dominant, autosomal recessive, and x linked recessive

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7
Q

what is autosomal dominant

A
  1. 50% chance passing trait to child
    –> Same probability for M/F
  2. Unaffected relatives/siblings do not transmit disorder
  3. Age of onset is delayed for some
    –> Huntington’s disease
    –> Appear later in life for signs/symptoms
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8
Q

what is autosomal recessive

A
  1. If both parents have mutant gene
    –> 25% = affected child
    –> 50% = carrier child
    –> 25% = noncarrier child
    –> Same probability for M/F
  2. Unaffected siblings may be carriers (67%)
  3. All children of affected parent are carriers
  4. Age is early in life for many conditions
  5. Symptoms tend to be more uniform than dominant disorders
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9
Q

what is x-linked recessive

A
  1. Circle with blue dot inside = carrier female
  2. 50% chance of passing gene to sons and daughters
    –> Daughters unaffected
    –> Males who receive gene are affected
  3. Affected males
    –> Do not pass to sons
    –> Pass mutant gene to daughters
  4. Only males are affected
    –> Females can be affected if father has trait and has children with female (rare)
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10
Q

what are examples of x linked diseases

A
  1. Hemophilia A & B
  2. Joint bleeding, muscle hematoma, soft tissue bleeding
    –> A = factor 8
    –> B = factor 9
  3. Incidence
    –> A - 1: 5000
    –> B - 1: 30,000
  4. Mutations
    –> A - inversion & small deletions
    –> B - missense
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11
Q

what is penetrance

A
  1. Many people who have a mutation in a specific gene show any traits associated with defects in that gene
  2. Complete: 100%
  3. Incomplete: <100%
  4. Even if people do not have pentrance they still have the gene but just do not show it
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12
Q

what is expressivity

A
  1. Mutations in a gene give rise to different outcomes in different people
    - Number
    - Identity (types)
    - Extent (severity)
  2. Ranges from complete to minimal
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13
Q

what is expressivity affected by

A
  1. Other genes
  2. Environment
  3. Age
  4. Exposure to harmful chemicals/ conditions
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14
Q

what are silent mutations

A

Replacement of a single nucleotide that results in the same amino acid still so you cannot see if there has been a mutation because the sequence does not change

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15
Q

what are missense mutations

A

Replacement of single nucleotide
&
Incorrect amino acid, which may produce a malfunctioning protein

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16
Q

what are nonsense mutations

A

Replacement of single nucleotide
&
Incorrect amino acid, shortening of protein/stop codon

17
Q

what are insertions

A

Frameshift
&
Insertion of a single nucleotide
&
Incorrect sequence, will produce a malfunctioning protein

18
Q

what are deletions

A

Frameshift
&
Deletion of a single nucleotide
&
Incorrect sequence, will produce a malfunctioning protein

19
Q

complete loss of function =

A

amorphic

20
Q

partial loss of function =

A

hypomorphic

21
Q

gain of function =

A

hypermorphic

22
Q

dominant negative =

A

inhibits activity of unmutated protein

23
Q

Acquisition of a new property =

A

neomorphic

24
Q

what is a genetic variant

A

a change is sequence of genes

25
Q

what does pathogenic mean

A
  1. Responsible for causing disease
  2. Well supported by research
  3. Referred to as mutations
26
Q

what is likely pathogenic

A
  1. Probably responsible for disease causing
  2. Not enough research to be sure
27
Q

what is uncertain significance mean

A
  1. Not confirmed to cause disease
  2. Not enough research
28
Q

what is Likely benign

A
  1. Probably not responsible for disease
  2. Not enough research to be sure
29
Q

what is benign

A
  1. Not responsible for disease
  2. Strong research to rule out disease link
30
Q

what is an inherited variant

A
  • Passed from parent to child
  • Present throughout a person’s life in virtually every cell in the body
  • Germline variants- present in the parent’s egg or sperm cells (germ cells)
31
Q

what is a non-inherited variant

A
  1. Occur at some time during a person’s life
  2. Not found in every cell in the body
  3. Somatic variants- occur in somatic cell (cells other than sperm and egg cells)
  4. Not passed to the next generation
  5. Can be caused by environmental factors (e.g. UV radiation) or result from an error in DNA replication
32
Q

what is a new (de novo) variant

A
  1. Found in a child but not either parent (no family history of the disorder)
  2. May occur
    –> In a parent’s egg or sperm cell but is not present in any of their other cells
  3. Variants acquired during development can lead mosaicism