ILA Flashcards
(356 cards)
Key facts about DNA transcription
Transcription – 1st stage protein synthesis
First step of gene expression, where the DNA sequence is copied to make an RNA molecule.
Performed by RNA polymerases.
Occurs in the nucleus.
Describe the process of preparing the DNA for transcription
*DNA helicase breaks the hydrogen bonds in the DNA double helix, unwinding it
* RNA polymerase binds to the TATA promoter region of the gene
Describe the actual process of DNA transcription
Single stranded binding proteins stop DNA strands reannealing
The RNA polymerase then adds complementary mRNA nucleotides to this template strand, building an RNA chain. (C-G, but A-U (not T as in DNA)). Moves in a 3’to 5’ direction. This transcript now contains the same information as the non-template (coding) strand of DNA.
Describe the process of ending transcription
Sequences called terminators or stop codons signal the transcript to be released from the RNA polymerase. → mRNA strand produced with a poly-A tail (end – stops DNA degrading) & a 5’ cap (beginning)
Describe the modification of pre-mRNA
The molecule formed is called pre-mRNA, as it forms exons and introns. Introns are removed in a post-transcriptional modification phase = Splicing → carried out in nucleus by slicosomes & mRNA leaves nucleus via nuclear pore
Key facts about translation
Second step of gene expression, where proteins are synthesised.
Occurs in the cytoplasm – mRNA binds to ribosome
Key facts about tRNA and ribosomes
- tRNAs connect mRNAs to the amino acids they code for
- At the end of each tRNA there’s an anticodon, which can bind to specific mRNA codons.
- Each ribosome has a small and a large part. These join together over the mRNA. The ribosome provides sites for the tRNA to bind. Ribosomes also act as enzymes and catalyse the reaction
Describe the process of translation
A ribosome binds to the start codon on the mRNA. mRNA moves in a 3’ to 5’ direction. tRNA molecules bind to the ribosome via codon-anticodon interactions. A peptide bond forms between the two amino acids attached to the tRNA.
* The ribosome moves along the mRNA one codon at a time, until it reaches a stop codon. This is the end of the process. Post-translational modification may then occur.
What is the role of mRNA?
synthesized in the nucleus using nucleotide triphosphates and RNA polymerase II - Attaches to ribosomes during translation to allow correct tRNA to bind to form polypeptide chain.
What is the role of tRNA?
Binds to specific amino acids at complementary mRNA codon to hold the amino acids in place to form the polypeptide chain.
What is a transcriptome?
The sum total of all the mRNA molecules
What is single nucleotide polymorphism (SNP)?
- DNA sequence variation when a single nucleotide (ATCG) differs/is substituted * Most common type of genetic change & occur normally → SNPs can occur once in every 1000 nucleotides → 4-5 million in persons genome
What are some of the consequences of SNP?
Can result in a different codon which generates a different protein and thus disease – but most don’t (often introns) E.g. sickle cell anaemia or cystic fibrosis
* If present in recognition sequence of restriction enzyme or affect recognition / promoter/termination sequences they can change the length of proteins or produce different length DNA fragments
* Can act as biological markers to locate genes associated with disease
What causes sickle cell anaemia?
Haemoglobin S (Hb S) = sickle cell haemoglobin. It’s caused by a SNP of adenine to thymine ((GAG codon changes to GTG) on 17th nucleotide.
In sickle cell anaemia, both genes that code for haemoglobin are abnormal (Hb SS). In sickle cell trait, only one chromosome carries the abnormal allele (Hb AS).
Mutation occurs in the HBB gene (codes for beta subunit) & in sickle cell disease only one of the beta-globin subunits is replaced by Hb S.
What changes are made to haemoglobin with sickle cell disease?
Haemoglobin has two subunits ( 2 alpha & 2 beta subunits) . The alpha subunit is normal in people with sickle cell disease. The beta subunit has the amino acid valine at position 6 instead of the normal glutamic acid = different primary structure
Why does the haemoglobin form differently in people with sickle cell disease?
The substitution of glutamate for valine is a nonconservative replacement → different biochemical properties, in this case glutamate is a negatively charged amino acid whereas valine is a hydrophobic branched chain aliphatic amino acid.
When hemoglobin is in its deoxygenated, the additional valine residues bind to a hydrophobic area on other S-hemoglobin molecules, forming a chain of hemoglobin that in turn pulls the red blood cell into its signature sickle shape, therefore it now has a different quaternary structure.
Why does the altered haemoglobin cause the RBC to be a sickle cell?
Abnormal haemoglobin molecules clump together into linear chains (polymerisation) which reduces the haemoglobin’s affinity for oxygen
NB this is Temperature dependent
What are the functional changes to the RBC in sickle cell ?
- Cells don’t live as long
- Lower affinity for oxygen
- Gets stuck in blood vessels
- Overall, leads to reduced delivery of O2 to muscles
Describe the different levels of protein structure
Primary= chain if amino acids – covalent bonds
Secondary = alpha helix, beta pleated sheets – H+ bonds
Tertiary= 3D structure of a single chain of amino acids
- Van der Waals bonds
- H+ bonds
- Electrostatic
- Ionic
- Disulphide bridges
Quartenary = overall 3D structure of a polypeptide
Can sickled cells return to their original shape?
Deoxygenated Hb S molecules are insoluble and polymerise. The flexibility of cells is decreased, and cells become rigid and take up the characteristic sickle appearance.
This process is initially reversible, but with repeated sickling, cells will eventually lose their membrane flexibility. They then become irreversibly sickled
What are some of the complications of sickle cell disease?
Complications can include infections, delayed growth, and these episodes of pain which are sometimes called pain crises.
Pain crises typically occur in the bone.
Sickle cell patients are at increased risk of stroke but this is far less common than in the bone.
What is a positive of sickle cell disease?
Because people with one copy of the “faulty” gene are resistant to malaria, it is beneficial in areas with a high risk of malaria - Africa, the Mediterranean, the Middle East, India, South America or the Caribbean - so people who are from or have ancestors from these areas are more likely to carry the “faulty” gene. This means they are also more likely to have two copies of it, and so suffer from sickle cell disease
What are the symptoms of sickle cell anaemia?
In cold weather, our blood vessels narrow to retain heat (vasoconstriction). Sickle-shaped red blood cells can become stuck in small blood vessels due to their abnormal shape. This can lead to the blood vessel becoming blocked, and can also mean that oxygen may not reach certain tissues, and can lead to tissue death. This can cause a pain episode or crisis to start suddenly, usually in the lower back, arms, legs, chest and belly. When blood returns to the affected area, it can also cause inflammation and pain. If lots of these crises occur, it could cause long term damage to the tissues.
What are some of the treatments of sickle cell anaemia?
- Hydroxyurea used as treatment because it stimulates the bone marrow to make foetal haemoglobin (foetal Hb) → foetal Hb has a better ability for carrying the oxygen around the blood
- This is why newborn babies don’t present with sickle cell → HbF prevents sickle cell but stops being produced after a year
- Embolising drugs
- Can give a plasma exchange to reduce the number of sickle cells