Gene Regulation Flashcards

1
Q

Gene regulation:

A

how a cell controls which of its genes are expressed

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2
Q

What is the primary control point for most proteins

A

Transcription

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3
Q

How do regulatory proteins work

A

alter chromatin structure, control assembly of transcription machinery

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4
Q

Where do regulatory proteins bind?

A

To DNA outside of promotor sequence (control elements)

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5
Q

Where do regulatory proteins bind?

A

To DNA outside of promotor sequence (control elements)

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6
Q

Activators:

A

Bind to DNA sequences called enhancers
Attract and position general transcription factors & RNA polymerase so that transcription can begin

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7
Q

How do activators work

A

-physically recruit transcription material to appropriate site
-recruit proteins to modify chromatin to make it more accessible
(can do one or both!)

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8
Q

Repressors:

A

Bind to DNA sequences called silencers
Block the general transcription factors & RNA polymerase

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9
Q

How do repressors work

A

-physically block activator proteins so they can’t recruit transcription machinery
-recruit proteins that modify chromatin to make less accessible
(can do one or both)

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10
Q

What is a mediator

A

Complex of proteins that serve as intermediary between:
-gene regulatory proteins
-general transcription factors
-RNA polymerase

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11
Q

What type of control are micro RNA and short interfering RNA examples of

A

Post-transcriptional control

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12
Q

MicroRNA action

A

-Transcribed –> folds into hairpin
-Processed by Drosha
-Exported into cytoplasm & processed further by enzyme dicer
-Binds to a group of proteins and one strand is degraded
-Then binds to mRNA

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13
Q

What enzyme processes microRNA

A

Drosha

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14
Q

If the mRNA and microRNA match perfectly then…

A

mRNA is chopped up

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15
Q

If the mRNA and microRNA don’t match up…

A

Translation is limited

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16
Q

What section of mRNA does micrRNA usually bind to?

A

3’ untranslated region

17
Q

Are microRNAs coded in the genome?

A

Yes

18
Q

Are siRNAs coded in the genome?

A

No

19
Q

How are siRNAs generated

A

Exogenously

20
Q

What are the 3 post-translational modifications we learned about

A

Phosphorylation
Ubiquitination
Proteolitic processing

21
Q

How do siRNAs work?

A

They’re a perfect match to one specific mRNA target and cleave it

22
Q

How does proteolytic processing regulate protein production

A

Post-translational. Protein cleavage used to convert enzymes from inactive to active form, ensure activity/function at certain time/location

23
Q

What regulates translation initiation

A

Phosphorylation of eIF2
Cannot associate with ribosome –> no translation

24
Q

How does phosphorylation regulate protein production

A

Post-translational. Addition of phosphate group to AA can activate, deactivate, or change a protein’s behavior

25
Q

How does ubiquitination regulate protein production

A

Post-translational. Addition of a small protein (ubiquitin) to lysine residues. Usually marks protein for degradation

26
Q

Example of therapeutic use of gene regulation

A

Sickle cell anemia – microRNA cleavage of protein that suppresses fetal hemoglobin (we want fetal hemoglobin to stay because it’s not attacked in the disease process)

27
Q

Example of diagnostic use of gene regulation

A

Dysregulation of microRNA is associated with certain diseases

28
Q

Biomarker:

A

Measurable substance found in blood/body fluids/tissues that is indicative of a specific state (disease, infection, exposure)

29
Q

What is the primary control for gene regulation

A

Transcriptional