Exam One Flashcards
If you want to visualize a virus, parasite, or bacteria, what two diagnostic tests are available for this purpose?
(Light or electron microscopy)
What part of a cell is detected when using ELISA, IFA, and IHC?
(Protein)
What part of a cell is detected when using PCR, in-situ hybridization, next generation sequencing?
(DNA or RNA)
What tests are antibody-antigen based tests that detect antigen using protein?
(ELISA/enzyme-linked immunosorbent assay (sandwich), immunofluorescence, and immunohistochemistry)
(T/F) Immunofluorescent antibody testing can be used on cell cultures or tissues with a wide range of viral titers, from low to high.
(F, requires high viral titers)
SNAP tests (FELV/FIV, parvo, heartworm, etc.) are based on what test?
(ELISA)
(T/F) All SNAP tests use antibodies to capture antigen.
(F, some use antigen to catch antibodies, for example FIV is an antibody test (so there’s FIV antigen on the test and it captures FIV antibody) but FELV is an antigen test (so there’s FELV antibody on the test and it captures FELV antigen))
(T/F) The more cycles it takes for a PCR test to reach the established threshold cycle, the less DNA/RNA is present in the sample being tested.
(T, the opposite is also true so the less cycles it takes for a PCR test to reach the established threshold cycle, the more DNA/RNA is present in the sample being tested)
What PCR test is used for identification of clonal lymphocyte populations?
(PCR for antigen receptor rearrangement aka PARR; also used for detection of c-kit mutations in mast cell tumors → the more c-kit mutations you have the higher grade your mast cell tumor is)
What DNA/RNA based test allows for visualization of the virus in tissues or at the site of infection?
(In-situ hybridization)
What DNA/RNA based test is based on whole genome sequencing and is used for detection of unknown viruses?
(Next generation sequencing)
What sample is used for serology testing?
(Serum)
What tests are antigen-antibody based tests that detect the host response using antibody?
(This is serology → ELISA (direct and indirect), immunodiffusion, virus neutralization)
What is the highly specific test that uses antibodies in serum to inhibit virus replication?
(Virus neutralization → titer is the inverse of the highest dilution needed to neutralize the virus, this method is slow/expensive)
(T/F) If you have a neutralizing antibody, this indicates there was an active infection against the virus you are testing at some point in the patient’s past.
(T, vaccines typically produce antibodies that are not as strong as the neutralizing antibodies produced by true infection)
What type of testing is best used when determining what organisms are circulating in a population?
(Serology)
(T/F) Antibodies can be produced by infection, exposure with no clinical disease, and vaccination.
(T)
(T/F) Though the specificity of a test is high, if the prevalence is low in your area, there is a higher chance of false positives.
(T)
What is immunodiagnostics?
(The measurement of antigen-antibody interactions for diagnostics purposes)
What is serology?
(Primarily, measuring antibodies in body fluids)
Immunodiagnostics can use the detection of antibodies to determine exposure/disease/immunity (choose) in your patient.
(All of the above)
(T/F) Presence of antibodies = infection = disease.
(F)
This characteristic of a test is the test’s ability to designate an individual with disease/exposure as positive, truly identifying disease.
(Sensitivity → also your false negative right (if something is 98% sensitive, your false negative rate is 2%))
This characteristic of a test is the test’s ability to designate an individual who does not have a disease/exposure as negative, truly identifying lack of disease.
(Specificity → also your false positive rate (if something is 96% specific, your false positive rate is 4%))
Which of the fluorescent assays available can identify the presence of antigen in tissue?
(Both direct and indirect fluorescent antibody tests)
You use a direct/indirect (choose) fluorescent antibody test to measure antibodies in serum.
(Indirect, direct can only be used for detection of antigen in tissues)
(T/F) Immunoenzyme assays (ELISA) can measure both antigen and/or antibodies.
(T)
Agglutination tests are used to test for the presence of antigen/antibodies (choose) by measuring agglutination using blood or other body fluids (e.g. milk).
(Antibodies)
(T/F) The intensity of the color of a positive dot on a SNAP test correlates to the amount of antibodies present in the sample run.
(F, SNAP tests are qualitative only)
Viral neutralization assays measure antigen/antibodies and can be quantitative.
(Antibodies, specifically antibodies that neutralize the virus, since these tests are quantitative you can get titer results)
If you have a huge lesion that you cannot possibly send the entirety of to the lab, what is a key location that you should sample?
(The interface from normal to abnormal tissue)
What are two downsides to small samples such as a tru cut biopsy?
(The small sample may not be representative of the entire lesion and small samples are much more susceptible to artifact)
When should you sample the GIT in a necropsy?
(At the end optimally)
What is the appropriate tissue:formalin ratio?
(1:10)
What are the 5 important components of a morphological diagnosis?
(Pathological process, organ affected, chronicity, distribution, and severity)
When is empirical therapy indicated? Three answers.
(There is a proven efficacious treatment for your top differential, when waiting for c/s results, and when client cannot afford c/s)
What are some instances where specific diagnosis of bacterial infections is needed?
(Animal is significantly compromised (very young/old, seriously ill), suspected infx in a difficult to treat site or a site with serious consequences (brain, joint, etc.), suspected bacterial pathogens with unpredictable susceptibility patterns or ones that rapidly develop resistance, poor responses to earlier therapy, outbreak of disease, and suspected dz is notifiable)
When are swabs an acceptable sample?
(Mucus membranes, ears, uterine (if using guarded), conjunctiva, cornea, only when you can’t collect something better)
(T/F) Fine needle aspirate samples are the preferred method for all bacteriology samples.
(T)
What is the main disadvantage of FNAs?
(Bacteria don’t live in them forever, especially anaerobes so get them to the lab asap)
When you take an FNA, you should also perform a smear. What evidence would you be looking for to indicate bacterial infection?
(Lots of neutrophils = inflammation, toxic changes, bacteria either extra/intracellular)
What is the purpose of removing the topmost layer of a punch biopsy sample prior to submission for bacteriology testing?
(Removes surface contamination)
Do bacteria survive longer in FNA samples or tissue samples?
(Tissue samples)
What are the pros and cons of free catch samples?
(Pros → cheap, may be the only way to collect a sample (i.e. GI tract), cons → will get normal flora contamination)
Do you want blood to clot when taking blood culture samples?
(No)
Can you use EDTA tubes for a blood culture?
(No EDTA has direct bacterial effect, use specific blood culture vials)
Sepsis is usually associated with cyclical fevers where there are troughs and spikes, when should blood culture samples be taken in these patients?
(When they are in a fever spike, this usually corresponds to when there is a high number of bacteria in the blood)
What are other sample types that you can use blood culture tubes for?
(Joint and CSF fluid)
Should blood culture tubes be refrigerated?
(No, leave at room temp to allow bacteria to multiply, there should be bacteria in this site anyway so if there’s some, that’s significant enough and the actual number of them doesn’t matter)
If you take a sample under the impression that there may be fungal involvement, should that sample be refrigerated or not?
(Not)
If you are taking samples from a site with normal flora, what do you need to consider when you are looking at your interpretation?
(The bacteria found is not apart of the normal flora (but still have to be sure it can cause dz) OR the bacteria is apart of the normal flora but it has increased numbers and has the ability to cause the dz seen)
What is the four point rule that should be applied to all samples/interpretations taken from sterile sites?
(Was the sample collected correctly, was there inflammation present on cytology, was there an organism present on cytology, and can the diagnosed organism cause THIS dz)
You are presented with a 2 year old quarter horse that has a large submandibular mass that feels warm and tender on palpation, what sample is the most ideal to submit for your patient?
(FNA)
What answer would you receive back when you complain that you did not get your susceptibility results back when Streptococcus spp. are identified in your sample?
(Beta hemolytic Streptococcus spp. have predictable susceptibility to first line antimicrobial therapies)
(T/F) Susceptibility testing is not needed when systemic antimicrobial therapy will not be used.
(T)
(T/F) Susceptibility testing is not needed when a probable pathogen has not been identified or your identified pathogen has a predictable susceptibility pattern.
(T)
(T/F) Susceptibility testing is not possible for all pathogens, for example Nocardia spp.
(T)
(T/F) Clostridium spp. are predictably susceptible to penicillin but can still be difficult to treat depending on the site of infection.
(T, especially if dealing with a necrotic site)
What do susceptible, intermediate, and resistant mean?
(Susceptible → growth inhibited by a concentration of an abx associated with a high likelihood of therapeutic success (NOT GUARANTEED); intermediate → growth inhibited by a concentration of an abx associated with an uncertain therapeutic effect (can change uncertainty by increasing dose or decreasing dose interval); resistant → growth inhibited by a concentration of an abx associated with a high likelihood of failure)
What is the 90-60 rule?
(In an immunocompetent patient with a monobacterial infx, bacteria reported as susceptible are associated with a positive therapeutic response in 90% of patients and bacteria reported as resistant are associated with a positive therapeutic response in 60% of patients)
(T/F) An anaerobic culture for a urine sample in a patient with signs of a UTI is a waste of money.
(T, do not need anaerobic culture for urine, anaerobic organisms unlikely to cause UTI)
What do you do if you started empirical treatment for a dog with a UTI and your susceptibility report comes back with that abx being an intermediate drug?
(Check on the dog; if getting better finish the course, if not getting better switch to susceptible drug)
How does reporting where you obtained your sample affected reported MIC values?
(Drugs achieve different concentrations in different parts of the body so that may change the MIC and if the drug will be reported as S, I, or R)
What is an antimicrobial breakpoint?
(The maximum MIC that predicts successful therapy, essentially tells you if an organism is S, I, or R by taking into account the normal range of MIC values in wild type bacteria, the PK/PD properties of the drugs in the species of interest, and +/- site of infection)