Exam 3: Ch 13 Targeting of Proteins to Mitochondria, Chloroplasts, Peroxisome Flashcards

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1
Q

structure of mitochondria and chloroplasts

A

2 phospholipid bilayers

outer membrane, inner mebrane, intermembrane space, internal matrix (lumen)

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2
Q

structure of peroxisome

A

single membrane and single luminal matrix

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3
Q

proteins encoded by mitochondrial or chloroplast DNA are…

A

synthesized on ribosomes within the organelles and directed to the correct subcompartment immediately

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4
Q

the majority of proteins in mitochondria and chloroplasts are encoded by genes in the…

A

nucleus, and imported into the organelles after synthesis in cytosol by free ribosomes

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5
Q

do proteins targeted to the mitochondria, chloroplast, and peroxisome have a signal sequence?

A

yes, part of the mature protein

cleaved in mitochondria and chloroplast

not cleaved in peroxisome

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6
Q

in mitochondria and chloroplasts, protein import requires ____ and occurs where

A

energy

occurs at points where the outer and inner membranes are close together

may need 2 targeting sequences and 2 translocon systems

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7
Q

import to matrix requires

A

a matrix-targeting sequence

goes to outer mitochondrial memb. import receptor –> import pore (outer memb)

simultaneous transport occurs through TIM through the inner membrane into the matrix

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8
Q

are chaperonins found in the matrix?

A

yes, help final folding of matrix proteins

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9
Q

studies with ______ proteins show important features of mitochondrial import

A

chimeric

a precursor must be unfolded to enter import pores

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10
Q

_ energy inputs are needed to import proteins into mitochondria

A

3

ATP hydrolysis by chaperone proteins

molecular motor of chaperone + TIM

proton-motive force (H+ electrochemical gradient)

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11
Q

targeting of proteins to areas other than the matrix of the mitochondria require..

A

more than 1 signal sequence

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12
Q

targeting to inner membrane

A

3 pathways

1: same as targeting to matrix + stop-transfer sequence
2: insertion into inner membrane
3: incorporates multiple segments into inner membrane

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13
Q

targeting to intermembrane space

A

2 pathways

1: matrix targeting sequence + sequence that blocks translocation of protein across inner membrane
2: direct transport to intermembrane space without a matrix targeting sequence

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14
Q

targeting to outer-membrane

A

beta barrel structure

interact with general import pore

transfer to SAM

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15
Q

targeting of chloroplast _____ proteins is similar to import of mitochondrial matrix proteins

A

stromal

ex. enzymes of calvin cycle (rubisco)

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16
Q

stromal import sequence

A

similar to matrix import sequence

transport entirely ATP hydrolysis dependent

involves a receptor and import pore

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17
Q

thylakoid

A

series of interconnected membranous sacs

proteins in thylakoids carry out photosynthesis

18
Q

many proteins in thylakoids are synthesized in the…

A

cytosol as precursors with multiple targeting sequences

stromal import sequence, thylakoid lumen sequence

19
Q

_ pathways for transporting proteins from the stroma to the thylakoid have been identified

A

4

closely related to translocation across bacterial membrane

20
Q

4 pathays of thylakoid transport

A

1: involves an SRP with a translocon
2: ATP hydrolysis
3: related to Oxa1 protein
4: metal-containing cofactors, H+ electrochemical gradient

21
Q

as peroxisomes are enlarged by addition of protein and lipid, they eventually…

A

divide to form new ones

22
Q

peroxisomes use what types of enzymes

A

ones that use molecular oxygen to oxidize substates

generates hydrogen peroxide

abundant in liver cells

23
Q

what sequence targets proteins to the peroxisome (matrix)

A

SKL at the c terminus

peroxisomal targeting sequence 1 (PTS1)

24
Q

peroxisomal protein import mechanism

A

protein with PTS1 binds to soluble carrier protein in cytosol

carried and binds to receptor in peroxisome matrix

protein imported

carrier protein recycled

25
Q

is a different set of proteins required to embed proteins into the peroxisomal membrane?

A

yes

26
Q

nuclear envelope

A

two membranes that separate the nucleus from the cytoplasm

continuous with ER membrane

27
Q

nuclear pores

A

span both membranes of nuclear envelope

allow transport of proteins and other molecules into and out of the nucleus

made of nuclear pore complex made from nucleoporins

28
Q

imported nuclear proteins have what sequence

A

nuclear localization sequence

29
Q

do proteins enter the nucleus in a folded state?

A

yes

30
Q

environment of the nuclear pore

A

aqueous pore

31
Q

3 types of nuclearporins

A

structural: form scaffold
membrane: highly curved region

FG: line channel of NPC

32
Q

what receptor is needed for nuclear transport

A

a nuclear transport receptor

33
Q

two required cytosolic components for nuclear transport

A

Ran

nuclear transport receptor

34
Q

Ran

A

small monomeric G protein (GTP/GDP)

35
Q

nuclear transport receptor

A

binds the NLS on a cargo protein and to FG nucleoporins

in nucleoplasm, interacts with Ran-GTP which goes back to the cytoplasm

then Ran turns GTP –> GDP and releases the nuclear transport receptor back into cytoplasm

36
Q

what is exported from the nucleus to cytoplasm

A

proteins

tRNA

ribosomal subunits

37
Q

nuclear export requires what signal

A

a nuclear export signal (NES)

38
Q

what receptor is needed for nuclear export

A

exportin 1

interacts with Ran-GTP and NES

39
Q

most mRNAs are exported from the nucleus by a ___-independent mechanism

A

Ran-independnt

40
Q

mRNA export from nucleus

A

mRNA associated with an hnRNP forming an mRNP

uses mRNP exporter that interacts with FG nucleoporins

uses ATP hydrolysis

driven by a concentration gradient