Exam 1 study guide Flashcards

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1
Q

The scientific method steps

A

observations, hypothesis formation, experimentation, data analysis, conclusion

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2
Q

non-polar covalent bonds

A

atoms with similar electronegativities. Electrons shared equally
-covalent bonds are the strongest bc the atoms thing that the electron shared is theirs so they work hard to keep it

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3
Q

polar covalent bonds

A

atoms with different electronegativities, pos and neg. Shared unequally Ex:water

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4
Q

Electronegativity – what is it? Why is it significant? How does it relate to bond formation?

A

Def: ability of nucleus to attract electrons

Electronegativity is significant because
-It explains the stability of chemical compounds.
-It predicts the type of bond (covalent or ionic)
-It makes bonding between atoms possible

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5
Q

Ionic bonds

A

Ionic bond: is an attraction of positive and negative: definition for test
Electrons transferred, forming ions that are attracted to each other
-positive ion being attracted to negative ion
-ions are atom or molecule with charge
-Cation: pos charge, lost electrons
-Anion: neg charge, gained electrons
-Ionic bond: cation binds to an anion like i said pos being attracted to neg

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6
Q

Hydrogen bonds

A

Hydrogen bonds:
Electropositive hydrogen from one polar molecule is attracted to an electronegative atom
-water molecules form multiple hydrogen bonds with each other

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7
Q

van der Waals interactions

A

Van der Waals forces are weak intermolecular forces that are dependent on the distance between atoms or molecules. These forces arise from the interactions between uncharged atoms/molecules.

For example, Van der Waals forces can arise from the fluctuation in the polarizations of two particles that are close to each other.

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8
Q

4 “big picture” properties of water

A

high specific heat, hydrogen bonding alters the state of water, (cohesion, adhesion, surface tension), -ions and polar molecules dissolve readily in water, hydrophilic, hydrophobic interactions

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9
Q

Cohesion/adhesion

A

cohesion: (kindergarteners hold each others hands) water molecules are attracted to other water molecules and stick together via hydrogen bonding.

Adhesion: (kindergarteners holding teachers hand) water molecules are attracted to something that is not water (other polar molecules) and stick via hydrogen bonding

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10
Q

surface tension

A

Surface tension: measure of attraction between molecules at the surface of a liquid (LEARN MORE)

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11
Q

Moderation of temperature by water

A

Water moderates temperature in the following ways:
Water has a high specific heat, meaning it can absorb a lot of heat before its temperature rises.
Liquid water at the surface takes longer to heat up and cool down compared to air, helping to stabilize temperature.
Coastal areas near bodies of water have more moderate temperatures due to water’s high heat capacity.

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12
Q

Expansion upon freezing

A

Water expands upon freezing due to the following reasons:
Molecules set themselves in a very open arrangement that contains more space than the water in the liquid state.

Bodies of water freeze on the top first due to the maximum density of water at about 4°C.

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13
Q

Hydration shell

A

When the solvent is water, it is called a hydration shell or hydration sphere. The hydration shell represents water’s attraction or adhesion to a substance, and the greater the attraction, the greater the number of water molecules involved in the hydration shell.

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14
Q

hydrophobic vs hydrophilic

A

Hydrophilic: water loving, things that can dissolve in water, often have a charge like polar or ionic. Hydrophobic: water fearing, do not like water, nonpolar, no charge. Amphipathic have hydrophilic and hydrophobic regions, they form micelles when placed into water

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15
Q

Define acid/base and understand the pH scale and what it means in terms of H+ content

A

As Acidity goes up, pH goes down, H+ donor
Base (akline) when put in water the pH goes higher, H+ acceptors

The term “base” in pH refers to:
A substance that accepts hydrogen ions.
When dissolved in water, it results in a solution with more hydroxide ions than hydrogen ions, making it alkaline.
On the pH scale, values greater than 7 are considered basic.

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16
Q

Buffers- what they do and the example of the buffer system in blood

A

Buffers: pair of substances that minimize Ph fluctuations in the fluids of living organisms
Most buffers consist of a weak acid and a weak base. They help maintain a given pH even after the addition of an acid or a base. For example, blood contains a carbonic acid (H 2 CO 3)-bicarbonate (HCO 3-) buffer system. In this system, the weak acid dissociates to a small extent, giving bicarbonate ions

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17
Q

Dehydration synthesis & hydrolysis reactions

A

Hydrolysis reactions: a chemical reaction that breaks apart molecules using water

Dehydration reaction or dehydration synthesis reaction is a chemical reaction in which two molecules join together via a covalent bond, with the removal of a water molecule. . A dehydration reaction is a specific type of condensation reaction and synthesis reaction.

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18
Q

functional groups examples

A

carboxyl: carbon atom double-bonded to an oxygen atom and single-bonded to a hydroxyl group (–OH), giving it the formula R-COOH where “R” represents the rest of the molecule

hydroxyl: hydroxyl group (―OH), in chemistry, a functional group with one hydrogen and one oxygen atom.

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19
Q

Carbohydrates

A

Carbohydrates: sugars, usually long chains
-composed of C,H, and O atoms (carbon with water)

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20
Q

Monosaccharides

A

Monosaccharides: simplest sugar
e.g. glucose, fructose, ribose

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21
Q

Disaccharides

A

Carbohydrates composed of 2 monosaccharides

e.g. sucrose

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22
Q

Polysaccharides

A

many monosaccharides
e.g. glycogen, starch, cellulose, chitin

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23
Q

Lipids: know the 3 classes of lipids

A

(fats, phospholipids, steroids)

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24
Q

Unsaturated fatty acids
-describe bonding

A

Unsaturated fatty acids: 2 or more carbons in the fatty acid contain a double bond, each double bond forms a kink, forms a tail, lower melting point, liquid at room temp like oils, found in plants

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25
Q

Saturated fatty acids
-describe bonding

A

Saturated fatty acids: all single linked carbon covalent bonds, carbons are filled with hydrogen, No double bonds, flat straight structure, higher melting point, solid at room temp, found in animals

ex:butter

26
Q

Proteins – overall functions of proteins

A

support muscle contraction, digest enzymes, hormones, DNA

27
Q

Structure of a general amino acid

A

A central carbon atom is bound to an amino group. carboxyl group, side chain, and a hydrogen atom

28
Q

peptide bonds

A

The covalent bond that forms between the carboxyl group of 1 amino acid is called a peptide bond

29
Q

Four levels of protein structure

A

Primary, secondary, tertiary, and quaternary

30
Q

Determinants of protein structure

A

Primary: the linear sequence of its polypeptide
secondary: consists of spirals (a-helix) and sheets (B-pleated), created by hydrogen bonding in peptide backbone
Tertiary: Polypeptide fold and reforms upon itself to assume a 3-dimensional shape
Quaternary: the association of 2 or mire polypeptides to form a protein

31
Q

What is standard deviation?

A

the dispersion of values from the average or mean, how spread out the data is, larger standard deviation means data is more spread out, lower is data is more clustered around mean

32
Q

Null hypothesis definition
Explain when you would use a null hypothesis

A

Null hypothesis: proposes that NO statistical significance exists among a given set of observations ex: fertilizer does no affect plant growth
-null = no difference

It is useful because it can be tested and found to be false, which implies a relationship between the observed data3.

33
Q

T-test definition
Understand when to use a t-test

A

tells us how true the calculated mean and standard deviation from the experiment are according to the population (does data from sample go to the whole population)
-To do a T-test you need the mean, standard deviation and N (sample number for each group)

Comparing the means of two groups (pairwise comparison).
Wanting to determine if differences in means could have happened by chance.

34
Q

Be able to interpret the meaning of a p-value and how it relates to a null
hypothesis

A

P-value: how valid are my results, p value should be LESS than 0.05 to be valid, it means that you are 95% positive that the two groups are statistically different, means if you repeated the experiment you would be likely to get the same results
Statistically significant: if experiment was repeated would you get the same result

The null hypothesis (H0) states no relationship exists between the two variables being studied.
The p-value indicates how believable the null hypothesis is, given the sample data.

35
Q

Discovery based science

A

Collection and analysis of data without the need for a preconceived hypothesis, goal is to gather more info. Ex: test drugs to look for action against a disease

36
Q

How much difference in electronegativity between 2 elements for it to be considered polar?

A

If the difference in electronegativity is greater than 1.8, the bond is ionic.
If the difference in electronegativity is between 0.4 and 1.8, the bond is polar covalent.
When the difference is very small or zero, the bond is covalent and nonpolar

37
Q

Monounsaturated

A

1 C=C

38
Q

Polyunsaturated

A

multiple double bonds?

39
Q

Protein composition

A

Carbon. hydrogen, nitrogen, oxygen and small amounts of other elements like sulfur

40
Q

Phospholipid function

A

Membrane formation

41
Q

Triglycerides function

A

Energy storage

42
Q

Steroid ring structure function

A

Hormone production

43
Q

Waxes functions

A

Water storage

44
Q

What type of fat is trans fat?

A

Trans fats are synthetic unsaturated fats

45
Q

Saturated fats - plants or animals?

A

Animals

46
Q

Unsaturated fats - plants or animals?

A

plants

47
Q

Polypeptides

A

linear strings of amino acids

48
Q

3 categories that amino acids go into:

A

nonpolar hydrophobic: does not want to interact with polarity of water (look for H and CH like hydrocarbons, that tells you that it is hydrophobic and nonpolar.)

Polar (uncharged) hydrophilic: look for NH or OH in the blue side chains bc that tells u its in this group

Polar (Charged) hydrophilic: look for physical charge in side chain either acidic or basic

49
Q

Hydrolysis

A

taking water and breaking it apart, breaking bonds

50
Q

Dehydration synthesis:

A

Allow connect monomers to make polymers: dehydration reaction
-dehydration reaction produces water
-taked 1 hydroxyl and 1 hydrogen to make water

51
Q

Primary structure of protein

A

string of amino acids, peptide bonds hold these together, determined by genes(DNA)

52
Q

Tertiary structure of protein

A

3D shape of a SINGLE polypeptide, gives overall shape, determined by interactions among various side chains (R groups)

53
Q

Secondary structure of protein

A

consists of spirals (a-helix) and sheets (B-pleated), created by hydrogen bonding in peptide backbone

54
Q

Quaternary structure of protein

A

present if protein has interactions between multiple polypeptide chains

ex: hemoglobin has quaternary structure: has 4 subunits: 2 alpha, 2 beta

55
Q

5 factors critical for protein folding and stability:

A

Hydrogen bonds: contributes to A helix, and B sheets

Ionic bonds and other polar interactions: ionic interacting with other partially charged things

Hydrophobic effect: Carbonhydrogens are hydrophobic so the nonpolar side chains hide in the middle of a protein

Van der Waals dispersion forces: you have your molecules that if they are in a specific distance of each other they will be attracted to each other for a bit

Disulfide bridges: a covalent bond forms between 2 cysteine side chains and is very strong

56
Q

What causes protein denaturation?

A

Changes in protein’s pH, temp, ionic concentration

57
Q

What are the two classes of nucleic acids?

A

Deoxyribonucleic acid (DNA) and Ribonucleic acid (RNA)

58
Q

What are the 3 components of a nucleotide?

A

Phosphate group, pentose sugar (Ribose or deoxyribose), and a base

59
Q

What are the 4 nitrogenous bases present in DNA?

A

Adenine, guanine, thymine, cytosine

60
Q

In DNA molecules what 2 are being paired?

A

Adenine and thymine

Guanine and cytosine