Exam 1: Lecture 15 & 16 Flashcards

1
Q

telomere organization:

A

region of repetitive nucleotide sequences at each end of a chromosome (TTAGGG)n

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2
Q

telomere fcn:

A

protects the end of the chromosome from deterioration or form fusion with neighboring chromosomes (sticky ends can cause breakage)

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3
Q

centromere structure/organization:

A

constricted region of a chromosome where spindle fibers attach, surrounded by heterochromatin

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4
Q

centromere fcn:

A

essential for chromosome separation

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5
Q

dna at the ends of euk chromosomes consists of telomeric short repeated sequences. the G-rich strand at the telomere is longer than the C-rich strand. this is relevant for:

A

T-loop; G-rich strand folds over and pairs with a short stretch of dna to form t-loop

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6
Q

shortened telomeres are associated with

A

shorter life span and increased incidence of disease

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7
Q

when telomeres are never shortened, ie able to extend their life span indefinitely, this is associated with

A

cancer; cells never dying

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8
Q

telomere length is inversely associated w/

A

aging

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9
Q

region of a chromosome to which the microtubules of the spindle attach, via the kinetochore, during cell division

A

centromere

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10
Q

a complex of proteins associated with the centromere of a chromosome, to which the microtubules of the spindle attach during cell division

A

kinetochore

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11
Q

a small, cylindrical cell organelle, located near the nucleus in the cytoplasm of most euk cells, that divides in perpendicular fashion during mitosis

A

centriole

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12
Q

the centromere is the chromosomal locus essential for

A

chromosome inheritance and genome stability

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13
Q

the physical role of the centromere is to

A

act as the site of assembly of the kinetochore

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14
Q

the kinetochore is a highly complex multiprotein structure that is responsible for

A

the actual events of chromosome segregation

  • binding microtubules
  • signalling to the cell cycle machinery when all chromosomes have adopted correct attachments to the spindle
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15
Q

positive supercoiling is for

A

packaging dna ( no access to dna)

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16
Q

negative supercoiling is for

A

unwinding dna (for the process of transcription)

17
Q

topoisomerase is for

A

enzyme responsible for adding and removing turns in the coil (supercoiled dna is overwound or underwound, causing it to twist on itself)

18
Q

bacterial have _ dna which is advantageous how?

A

circular; no tips exposed to nucleases like proks and their need for telomeres

19
Q

define histones

A

proteins that condense/wrap/package and order dna

20
Q

histones have a _ charge and dna has a _ charge

A

histones have positive and dna negative charge

21
Q

nucleosome

A

segment of dna wound in sequence around 8 core histone proteins (histone unit)

22
Q

chromatosome

A

histone octamer plus linker histone (H1) and 166 bp of dna

23
Q

linker dna

A

double stranded dna inbtwn two nucleosome cores (holds cores together)

24
Q

what are the 2 main biochemical modifications histones/dna are subjected to?

A

histone acetylation = de-condense (gene activation)

dna methylation = compact/condensing

25
t/f: the nucleosome is the fundamental repeating unit of a chromosome
false of a CHROMATIN
26
chromatin is
dna plus the proteins that make up a chromosome
27
euchromatin
less condensed; location is on chromosome arms. transcription is often
28
heterochromatin
more condensed; location is at centromeres, telomeres, and other specific places. transcription is infrequent
29
changes in chromatin structure: polytene
created by repeated rounds of dna replication with no cell division
30
changes in chromatin structure: chromosomal puffs
regions of relaxed chromatin where active transcription is taking place
31
changes in chromatin structure: dnase I sensitivity
correlates with gene activity/expression suggesting that chromatin structure changes in the course of transcription
32
is dna methylation reversible?
yes; methylation is often due to environmental factors and folic acid studies have shown reversibility
33
is epigenetics heritable?
yes bc of altered chromatin structure (histone modification, acetylation or dna methylation modification) w/o changing the dna sequence
34
retroviral/transposon origin?
SINEs (Alu) and LINEs (L1)
35
characteristics of moderately repetitive dna
-150-300 bp long -tandem repeated sequences interspersed repeat sequences (SINEs/LINEs)
36
characteristics of highly repetitive dna
- less than 10 bp long | - microsatellite dna tandemly/adjacent repeated dna motifs
37
why is microsatellite dna useful in forensics?
each person has a unique "fingerprint" of microsatellites (inherit from mom and dad)
38
neutralizing their positive charges would have which effect on the histone proteins?
they would no longer be attracted to dna