Eukaryotic Cells Flashcards
Organelles
Small structure within a cell that carries out specific cellular functions
Nucleus function and number of membranes surrounding
Contain & protects DNA, transcription and partial assembly of ribosomes
2
Mitochondria function and number of membranes surrounding
Produce ATP via the Kreb cycle and oxidative phosphorylation
2
Ribosomes function and number of membranes surrounding
Synthesize proteins
0
RER function and number of membranes surrounding
Location of synthesis/modification of secretory, membrane-bound and organelle proteins
1
SER function and number of membranes surrounding
Detoxification and glycogen breakdown in liver; steroid synthesis in gonads
1
Golgi apparatus function and number of membranes surrounding
Modification and sorting of proteins, some synthesis
1
Lysosomes function and number of membranes surrounding
Contain acid hydrolyses which digest various substances
1
Peroxisomes function and number of membranes surrounding
Metabolize lipids and toxins using peroxides (h2o2)
1
The nucleus contains the genome and is surrounded by the
Nuclear envelope
Nuclear envelope
separates the contents of the nucleus into a distinct compartment, isolated from other organelles and the cytoplasm
In eukaryotes, _____, ____ and ____ occur in the nucleus while ____ occurs in the cytoplasm
replication, transcription, and splicing occur in N
translation occurs in C
Genome is so large in humans that it is split into pieces, each a separate linear DNA molecule called
How many are there in humans
Chromosomes
23
Since humans and animals are diploid,
have 2 copies of each chromosome
Chromosomes have a _____ in the center to ensure that they are properly replicated during cell division… one copy to each daughter cell
Centromere
Each chromosome also has special structures at both ends termed ______ which have large numbers of repeats of specific DNA sequence and with the help of a special DNA poly termed _____ , __________ during DNA replication
Telomeres
Telomerase, which maintains the ends of linear chromosomes
Locus
Specific location on the chromosome where the gene resides allowing gene regulation
Heteochromatin
Densely packed chromatin within which genes are inaccessible and turned off
Euchromatin
More loosely packed into chromatin and allow genes to be activated
Nuclear matrix/nuclear scaffold
Attached to DNA chromosomes and modifies gene expression via access to promoters and enhancers to discrete chromosomal regions known as domains
Nuclear matrix is attached to DNA chromosomes and modifies gene expression via access to promoters and enhancers to discrete chromosomal regions known as ______
Domains
Nucleolus
Ribosome factory
There is ____ membrane separating the nucleolus from the rest of the nucleus
no
The nucleolus consists of
loops of DNA, RNA poly, rRNA and protein components of ribosome
The nucleolus is the site of transcription of ___ and ___
rRNA and RNA poly I
The ribosome is partially assembled in the nucleolus, the protein components are _____ .
After partial assembly the ribosome is exported from the nucleus, remaining ____ until ______ in the _____ .
This may serve to prevent
transported in from the cytoplasm
Inactive until assembly is completed in the cytoplasm
Translation of hnRNA
The nuclear membrane has two two lipid bilayer membranes. The inner nuclear membrane surface faces _____ and the outer surface faces ______
Surface of the envelope facing the nuclear interior
Surface faces cytoplasm
The membrane of the ____ is at points continuous with the outer nuclear membrane. This makes the interior of the ____ (____) contiguous with the space between the two nuclear membranes
Endoplasmic reticulum
ER (lumen on the ER)
The nuclear envelope has many ______ that allow passage of material into and out of the nucleus
What can pass?
Nuclear pores
Small molecules (less than 60kD) and proteins can freely diffuse, but larger proteins cannot pass freely through the pores and are excluded from the nucleus unless they are AA sequence
Nuclear localization sequence
AA sequence of a large protein trying to pass through nuclear pores
Translated on cytoplasmic ribosomes and then imported into the nucleus via specific transport mechanisms
In addition to nuclear localization sequences, ___ is transported out of the nucleus by a specific transport mechanism rather than _____
RNA
Freely diffusing
Mitochondria are the site of ______
Oxidative phosphorylation
Matrix of the mitochondria
Bounded by inner and outer membranes and contains pyruvate dehydrogenase and enzymes of the Krebs cycle
Inner membrane of the mitochondria
Impermeable to the free diffusion of polar substances, like proteins, and is folded into the matrix in projections called cristae
Inner membrane of the mitochondria is impermeable to the free diffusion of polar substances, like proteins, and is folded into the matrix in projections called
Cristae
The outer membrane of the mitochondria is
Smooth and contains large pores that allow free passage of small molecules
Space between inner and outer membranes of the mitochondria is called
Intermembrane space
ATP produced within mitochondria is
Transported out into the cytoplasm to drive a greater variety of cellular processes
Mitochondria process their own genome which is ___ and ____
Much smaller than the cellular genome and consists of a single circular DNA molecule that encodes rRNA, tRNA and proteins (of the Electron transport chain/ATP synthase complex)
To explain that mitochondria possess a second system of inheritance, researchers suggest they
Originated as an independent unicellular organism living within larger cells
Endosymbiotic theory of mitochondrial evolution
To explain that mitochondria possess a second system of inheritance, researchers suggest they originated as an independent unicellular organism living within larger cells
Mitochondria exhibit maternal inheritance meaning
The mitochondria are inherited only from the mother, since the egg cytoplasm becomes the zygote cytoplasm
The sperm contributes only genomic (nuclear) DNA
The ER is a large system of folded membrane that accounts for
over half of the cell membrane
Rough ER is rough due to
Large number of ribosomes bound to its surface
Rough ER is the site of
Protein synthesis for proteins targeted to enter the secretory pathway
Smooth ER contains
enzymes involved in steroid hormone biosynthesis (gonads) or degradation of environmental toxins (liver)
The rough ER plays a key role in
directing protein traffic to different parts of the cell
Proteins translated on the free cytoplasmic ribosomes are headed towards
Peroxisomes, mitochondria, nucleus or cytoplasm
Proteins translated on the rough ER are headed towards
extracellular environment, plasma membrane, or membrane/interior of Golgi, ER, or lysosomes
Proteins synthesized on the rough Er are transported in vesicles that bud from the ER to the ____, then to the ____ or _____
Golgi apparatus
plasma membrane or lysosome
How is it determined which location the protein is translated on?
All start in cytoplasm, some have an AA signal sequence at N-terminus that tells them to go to the RER
The AA signal sequence is recognized by
Signal recognitions particle (SRP) which binds to the ribosome
The RER has SRP receptors to dock the AA signal sequence bearing protein on the RER membrane. When the protein is translated,
the polypeptide is pushed into the ER lumen (signal peptide first)
After translation is complete, the signal peptide is ____ by a ____ in the ____
removed by a signal peptidase in the ER lumen
For secreted proteins, once the signal sequence is removed the protein is transported to the
Interior of vesicles through the Golgi apparatus to the plasma membrane where it is released by exocytosis into the extracellular environment
Integral membrane proteins have
Sections of transmembrane domains that are signal sequences found on interior of protein (not N-terminus)
Not removed after translation
Transmembrane domains
hydrophobic AA residues that pass through lipid bilayer membranes
Not removed after translation
Observed on interior of protein
During translation, transmembrane domains are
threaded through the ER membrane and the protein is transported in vesicles to the Golgi apparatus and plasma membrane in same manner as a secretory protein
Additional functions of the rough ER include the initial post-translational modification of proteins… some ____ occurs in the rough ER, though it is usually associated with the Golgi apparatus
Glycosylation (adding saccharides to proteins)
Also in the ER Lumen to modify proteins post translation, ___ occurs
Disulfide bond formation
Default target for proteins going through the secretory path is the
Plasma membrane
Targeting signals are needed if a
protein going through the secretory path to the plasma membrane needs to be going elsewhere (i.e. the Golgi, ER or lysosome)
Proteins made in the cytoplasm that need to be sent to an organelle that isn’t in the secretory path (nucleus, mitochondria or peroxisomes) require
localization signals
Protein final destination: Secretory
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
Y
N
N
N
Protein final destination: Plasma membrane
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
Y
N
Y
N
Protein final destination: Lysosome
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
Y
N
N
Y
Protein final destination: Rough ER
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
Y
N
N
Y
Protein final destination: Smooth ER
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
Y
N
N
Y
Protein final destination: Golgi apparatus
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
Y
N
N
Y
Protein final destination: Cytoplasm
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
N
N
N
N
Protein final destination: Nucleus
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
N
Y
N
N
NProtein final destination: Mitochondria
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
N
Y
N
N
Protein final destination: Peroxisome
Signal Sequence?
Localization Sequence?
Transmembrane Domains?
Targeting Signal?
N
Y
N
N
Golgi apparatus functions (3)
- Modifies proteins made in RER (esp. oligosaccharides)
- Sorting and sending proteins to destinations
- Synthesizes macromolecules for secretion such as polysaccharides
Vesicle traffic to Golgi is ____
Unidirectional
The membrane bound or secreted proteins which are to be sorted/modified enter / exit the Golgi at
enter at one defined region and exit at another
Retrograde traffic
Opposite of unidirectional traffic occurs when protein escapes rough ER and must be put back by the golgi
Cis stack of golgi
Nearest rough ER
Proteins from the Cis stack are modified and transferred to the ___ where they are:
Medial stack where they are further modified
After the medial stack modifies the proteins they are sent to the
Trans stack where they leave in transport vesicles
The route taken by a protein is determined by its
signals within the protein that determine which vesicle a protein is stored into in the trans Golgi
Lysosome function
degradation of biological macromolecules by hydrolysis
Lysosome proteins are made in the ___, modified in the ____ and released in their final form in the ____
RER
Golgi
Golgi trans
Organelles that are no longer functional
can be degraded in the lysosome
Autophagy
Organelles that are no longer functional can be degraded in the lysosome.
Phagocytosis
Lysosomes degrade large particulate matter engulfed by the cell
Macrophages
In immune system engulfs bacteria and viruses
Phagocytic vesicle
Particles that are engulfed end up here and then are fused with a lysosome
After hydrolysis, the lysosome releases molecular
building blocks for reuse into the cytoplasm
Enzymes responsible for degradation in lysosomes are called
Acid hydrolyses
Acid hydrolases
Enzymes responsible for degradation in lysosomes only in ACIDIC environment
Acid hydrolyses are used as a safety mechanism. The pH of the lysosome is __ so the ___ because the pH of the cytoplasm is ___.
Therefore If the lysosome ruptures will the cell be damaged?
5
acid hydrolyses are in action
7.4
No because the acidic fluid will be diluted and the acid hydrolyses will be inactivated, however if many rupture at once the cell can be destroyed
Peroxisomes function
Variety of metabolic tasks
Peroxisomes contains enzymes that produce
hydrogen peroxide as byproducts
Peroxisomes are essential for ____
lipid breakdown
In the liver, peroxisomes assist with
detoxification of drugs and chemicals
H2O2 is a dangerous chemical so how does it exist as a byproduct in the peroxisome?
Peroxisomes contain an enzyme catalase which converts it to water and oxygen
Separation this activity into the peroxisomes prevents the cell from getting damaged by peroxides or oxygen radicals
Animals rely on ____ and a ____ to keep their structure and differentiate between the inside and outside of the cell
Cell membrane
Cytoskeleton