eukaryotic cells Flashcards

1
Q

the function of the nucleus is to

A

contain and protect DNA, replication, transcription, splicing, and partial assembly of ribosome (2)

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2
Q

what surrounds the nucleus to separate the contents of the nucleus into distinct compartments?

A

nuclear envelope - which is compose of a lipid bilayer membrane

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3
Q

the genome is the sum total of

A

an organisms genetic information (chpt 4 notes)

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4
Q

the nuclear envelope contains pores that allow

A

passage of material in and out of the nucleus

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5
Q

the smaller molecules enter by what process through the nuclear envelope pores?

A

diffusion

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6
Q

the larger molecules enter by what process through the nuclear envelope pores?

A

they must have a nuclear localization sequence (basic amino acid sequence) so they can be translated on cytoplasmic ribosomes to be imported into the nucleus through specific transport mechanism

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7
Q

the nucleolus (contains no membranes) is a region within the nucleus that functions as a ribosome factory for

A

loops of DNA, RNA poly, rRNA, and protein components of the ribosome

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8
Q

the nucleolus is the site of?

A

transcription of rRNA by RNA poly I

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9
Q

the nucleolus is largest in cells that are producing?

A

large amount of protein - the increase of size reflects the increase of ribosome synthesis

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10
Q

the loops of DNA in nucleolus are used as a?

A

template for ribosomal RNA production

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11
Q

the mitochondria is the site of?

A

oxidative phosphorylation and produce ATP via the krebs cycle

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12
Q

the inner membrane of the mitochondria is the location of?

A

the electron transport chain and ATP synthase

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13
Q

the inner membrane of the mitochondria is impermeable to what type of substances?

A

polar substances

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14
Q

the folding of the inner membrane (cristae) increases what?

A

the surface area and allows for increased electron transport and ATP synthesis

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15
Q

the endosymbiotic theory suggests that mitochondria?

A

originated as independent unicellular organism living within larger cells because it possess their own genome that consists of single circular DNA molecules

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16
Q

mitochondria exhibit maternal inheritance which means that

A

if the female has a disease caused by an abnormality in her mitochondrial genome, her offspring will have that disease

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17
Q

the rough endoplasmic reticulum contains

A

a larger number of ribosomes bound to their surface

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18
Q

the ribosomes on the RER serve as the site of

A

protein synthesis for proteins that will enter the secretory pathways

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19
Q

proteins synthesized on RER have three types of pathways:

A

1) will be secreted into the extracellular environment
2) will be intergral for plasma membrane proteins
3) will be in the membrane or interior of ER, golgi apparatus, of lysosome

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20
Q

signal sequence of a polypeptide is recognized by a signal recognition particle (SRP) which then binds to a

A

ribosome

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21
Q

the signal sequence is when proteins have a specific

A

amino acid sequence at their N-terminus

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22
Q

once a polypeptide binds to a ribosome via SRP, the RER has what?

A

SRP receptor that binds the ribosome-SRP complex to the cytoplasmic surface

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23
Q

once an ribosome-SPR complex binds to cytoplasmic surface, what happens?

A

translation then pushes polypeptide into ER lumen (page 181)

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24
Q

transmembrane domains are?

A

hydrophobic amino acid residues found on the interior of integral membrane proteins

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25
Q

transmembrane domains on integral membrane proteins allow for the protein to

A

pass through lipid bilayer membrane and not removed during translation and are threaded through the ER membrane

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26
Q

targeting signals are needed for

A

protein traffic for proteins that need to end up elsewhere like the golgi, ER, or lysosome

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27
Q

localization signals are needed for

A

protein traffic for when proteins made in the cytoplasm need to be sent to an organelle that is not apart of the secretory path (e.g nucleus, mito, or peroxisomes)

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28
Q

the three functions of the golgi apparatus are

A

1) modification of proteins made in the RER; especially important is the modification of oligosaccharide chains
2) sorting and sending proteins to the their correction destinations
3) synthesizes certain macromolecules, such as polysaccharides to be excreted

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29
Q

the vesicle traffic to and from the golgi apparatus is mostly

A

unidirectional

*retrograde traffic if proteins escape

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30
Q

the portion of the golgi nearest to the RER is

A

cis stack

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31
Q

the portion of the golgi is the middle to the RER is

A

medial stack

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32
Q

the portions of the golgi furthest from the RER is

A

trans stack

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33
Q

the pathway of the vesicles from the ER is

A

cis to medial to trans, where each section has different enzymes where the vesicles are modified to be moved to the next

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34
Q

once the vesicles have left the golgi the are transported to the

A

cell surface and fuses with the cell membrane that the contents of the vesicles are released into the extracellular environment (exocytosis)

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35
Q

constitutive secretory pathway is when vesicles are

A

immediately sent from the golgi to the cell surface

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36
Q

regulated secretory pathway is when vesicles are

A

release at specific times in a response from a change in the extracellular membrane

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37
Q

SER function to

A

detoxification and glycogen breakdown in liver and steroid synthesis in gonads

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38
Q

RER function to

A

location of synthesis/modification of secretory, membrane-bound, and organelle proteins

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39
Q

lysosomes function to

A

degradation of biological macromolecules by hydrolysis by acid hydrolases enzyme

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40
Q

lysosome proteins are made in the ____, then modified in the _____ to be released

A

RER and golgi

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41
Q

lysosomes perform autophagy, which is

A

self-eating, when organelles have been damaged, they are degraded by the lysosome
ex: mitochondria

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42
Q

lysosomes perform phagocytosis, which is

A

cell-eating, when lysosomes degrade large particulate matter by engulfing cell

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43
Q

lysosomes perform crinophagy, which is

A

lysosomal digestion of unneeded/excess secretory products

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44
Q

after hydrolysis processes, the lysosomes will release

A

molecular building blocks into the cytoplasm for reuse

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45
Q

the enzyme lysosomes use for hydrolysis/degradtion is

A

acid hydrolases

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46
Q

the environmental pH of lysosomes is around

A

5, so that the acid hydrolases can be active

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47
Q

peroxisomes function to

A

metabolize lipids and toxins using H2O2

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48
Q

in the liver, peroxisomes help by

A

detoxification of drugs and chemicals

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49
Q

peroxisomes contain an enzyme called

A

catalase which converts H202 into H20 + 02

50
Q

peroxisomes protect the rest of the cell from

A

peroxides and oxygen radicals

51
Q

in the plasma membrane, integral membrane proteins are

A

embedded into the membrane by hydrophobic interactions - so that the hydrophilic head of the phospholipids are either on the top or bottom of it

52
Q

in the plasma membrane, the transmembrane domains are

A

membrane crossing regions, where the domains take up an entire section of the membrane

53
Q

in the plasma membrane, peripheral membrane proteins are

A

not embedded in the membrane but chill on the top or bottom of the hydrophilic head

54
Q

equation for molarity (M)

A

moles of solute divided by #liters of solution

55
Q

equation for molality (m)

A

moles of solute divided by #kg of solvent

56
Q

electrolytes are free ions in a solution that

A

conduct electricity

57
Q

strong electrolytes are solutes that

A

dissociate completely into solution

58
Q

weak electrolytes are solutes that

A

dissociate partially into solution

59
Q

van’t hoff factor (ionizability, i) states how many

A

ions one unit of a substance will produce in a solution
ex: NaCl = Na+ + Cl- i=2
CaCl2 = Ca2+ + 2Cl- i=3

60
Q

colligative properties are dependent on the

A

number of solute particles in the solution rather than the type of particle

61
Q

colligative properties include

A

vapor pressure depression
boiling point elevation
freezing point depression
diffusion/osmosis

62
Q

vapor pressure depression is when the pressure exerted by

A

gaseous phase of a liquid that evaporated from the exposed surface of a liquid

63
Q

in vapor pressure depression, the weaker the substance’s intermolecular forces,

A

the higher the vapor pressure thus easily evaporates

64
Q

in vapor pressure depression, volatile liquids are those that are

A

easily vaporized thus have high vapor pressure

65
Q

in vapor pressure depression, when a liquid contains a dissolved solute, the vapor pressure if effected by

A

solute molecules are attached to solvent molecules (anchors) thus more energy is require to enter gas phase
and adding more solute to solution will decrease its vapor pressure

66
Q

the boiling point of a liquid is defined as the

A

temperature at which the vapor pressure of the solution is equal to the atmospheric pressure over the solution

67
Q

in boiling point elevation, the more solute particles in the solution

A

the higher the BP

68
Q

in freezing point depression, presence of solute particles interfere with

A

the arrangement of solvent molecules thus the liquid will have a decreases freezing point

69
Q

diffusion is the tendency of

A

liquids and gases to fully occupy the available volume (high to low)

70
Q

osmosis is the tendency of

A

solvents to diffuse rather than solutes

71
Q

in osmosis, semipermeable membranes allow

A

water to pass but not other solute particles like sucrose

72
Q

isotonic environment of a cell is when

A

the solute concentration is the same on the inside and outside

73
Q

hypertonic environment of a cell is when

A

there are more total dissolved solutes than the cell (wrinkled cells)

74
Q

hypotonic environment of a cell is when

A

there are less total dissolved solutes than the cell (swollen cells)

75
Q

osmotic pressure is the pressure it would take to

A

stop osmosis from occuring

76
Q

passive transport is when any

A

thermodynamically favorable movement of solute across a membrane where no energy is required

77
Q

simple diffusion is when

A

diffusion of solute through a membrane with help from a protein

78
Q

facilitated diffusion is when

A

movement of solute across membrane, down a gradient, when the membrane itself is intrinsically impermeable to that solute
channel proteins and channel carriers

79
Q

facilitated channel proteins allow material that

A

cannot pass through the membrane by simple diffusion to flow through the plasma membrane down a concentration gradient

80
Q

voltage-gated ion channels open in response to

A

change in the electrical potential

81
Q

ligand-gated ion channels open in response to

A

binding of specific molecule (i.e. neurotransmitter)

82
Q

facilitated carrier proteins bind to molecules being

A

transported to one side of the membrane and then undergo a conformational change to move the molecule to the other side

83
Q

the facilitated carrier protein, uniports transport

A

only one molecules

84
Q

facilitated carrier protein, symports transport

A

two substances

85
Q

facilitated carrier protein, antiports transport

A

carry two substances in opposite direction of gradient

86
Q

eukaryotes do not contain pores in the membrane because

A

pores destroy the barrier function of the membrane and allow solutes in the cytoplasm to freely diffuse out of the cell

87
Q

active transport is the movement of

A

molecules through membrane against a gradient that requires energy and proteins

88
Q

in primary active transport the molecule being transported is

A

coupled to ATP hydrolysis

89
Q

in secondary active transport the molecule being transported is

A

not directly coupled to ATP hydrolysis but rather the ATP is used first to created a gradient, then the potential energy is used to drive the transport

90
Q

the sodium potassium pump is a

A

transmembrane protein in the plasma membrane that pumps 3 sodium (Na+) out of the cell and 2 potassium (K+) into the cell

91
Q

the purpose of 3 sodium out and 2 potassium in, is to

A

hydrolyze one ATP to drive the pumping of these ions against their gradients

92
Q

once sodium has been pumped out they cannot return because

A

the membrane is impermeable to sodium ions

93
Q

potassium leak channels allow for

A

potassium ions that have been pumped into the cell to leak out depending on concentration gradient

94
Q

resting membrane potential drives secondary active transport because

A

as K+ leak from the cell, the movement of positive charge out of the cell creates an electric potential across the membrane with a net negative charge on the inside of cell

95
Q

the main purposes of the sodium potassium ATPase (pump) is to

A

maintain osmotic balance between the cell’s inside and outside
establish the resting membrane potential
provide the sodium concentration gradient used to drive secondary active transport

96
Q

mnemonic: life evolved in the ocean, which has high concentrations of NaCl, thus the concentrations of

A

Na+ and Cl- are high outside the cell and low inside the cell

97
Q

exocytosis is the process to transport material

A

outside of a cell in which a vesicle in the cytoplasm fuses with membrane and the content of the vesicle expelled into extracellular space

98
Q

endocytosis is the process in which materials are

A

taken into the cell by invagination of a piece of membrane to form a vesicle (endosome)
*3 types of endocytosis

99
Q

the first type of endocytosis is, phagocytosis which is

A

cell eating where there is an uptake of large particulate matter into a phagocytic vescile, which later merges with a lysosome

100
Q

the second type of endocytosis is, pinocytosis which is

A

cell drinking where a nonspecific uptake of small molecules and extracellular fluid via invagination

101
Q

the third type of endocytosis is, receptor-mediated endocytosis which is

A

site of endocytosis is marked by pit coated with clathrin (inside) and with receptors that bind to specific molecules (outside)
ex: cholesterol in the blood where if they are not removed they build into the walls of the arteries

102
Q

cell surface receptors bind through what type of mechanism?

A

lock and key

103
Q

the key component for a receptor is termed a

A

ligand

104
Q

signal transduction is when

A

a ligand is binding to its receptor on the extracellular surface of the plasma membrane that triggers a response within the cell

105
Q

ligand-gate ion channels are

A

channels that open upon the binding of a particular neurotransmitter
ex: when Ach binds, the receptor has confirmational change to become a sodium channel resulting in massive influx of Na+ to depolarize to muscle cell to contract

106
Q

catalytic receptors are

A

enzymatic active sites on cytoplasmic side of the membrane

the main protein is kinase, which is an enzyme that binds phosphate groups to proteins

107
Q

G-protein-linked receptors

A

associated with an intracellular protein that binds and hydrolyses GTP. When GTP is bound, the protein is active, and can regulate the activity of adenylyl cyclase; this modifies the intracellular levels of the second messenger cAMP. When the GTP is hydrolyzed to GDP, the protein become inactive again

108
Q

what provides structural support via cell wall in bacteria, plants, and fungi?

A

cytoskeleton

109
Q

what are the three types of internal cytoskeleton in animal cells?

A

microtubules, intermediate filaments, and microfilaments

110
Q

what two globular proteins are microtubules made of?

A

alpha-tubulin and beta-tubulin that form alpha beta- tubulin dimer

111
Q

what can microtubules only elongate at one end?

A

one side of the microtubule is anchored to the microtubule organizing center (MTOC) located near the nucleus

112
Q

within each MTOC is a pair of centrioles, which duplicate themselves during?

A

cell division, duplicate and move to each end of the cell - in mitosis the microtubules radiating out from the centrioles attach to the replicated chromosomes and pull apart to be copied

113
Q

MTOC are essential for mitosis but centrioles are not because

A

plant cells lack centrioles but still undergo mitosis

experiments have removed centriole and still have cells undergo mitosis

114
Q

microfilaments are rods formed in the cytoplasm from polymerization of the globular protein?

A

actin

115
Q

microfilament are essential for what function of the cell?

A

gross movement of entire cell, such as pinching and dividing parent cell into two daughter cells during cell division
and ameoboid movement (cell flowing in one direction)

116
Q

tight junctions form seals between cells that prevent the

A

movement of substances across the cell layer

they are bands running all around the cells

117
Q

tight junctions are found where in the body?

A

between the epithelial cells lining the intestines and between the cells forming the capillaries in the brain (blood-brain barrier)

118
Q

desmosomes are used in epithelial cells in the skin to

A

tightly hold together cells but not forming a complete seal

119
Q

desmosomes are concise points around the cell which are anchored to the plasma membranes of two cells by the protein

A

keratin

120
Q

gap junctions are pore like connections between adjacent cells that allow two cells’ cytoplasms to mix to permit the exchange of

A

ions, amino acids, and carbohydrates

NOT polypeptides or organelles

121
Q

gap junctions are located where in the body?

A

smooth and cardiac muscles to allow membrane depolarization of an action potential to pass directly from one cell to another

122
Q

oncogenes are mutated genes that

A

cause cancer by converting normal cells into cancerous ones