eukaryotic cells Flashcards
the function of the nucleus is to
contain and protect DNA, replication, transcription, splicing, and partial assembly of ribosome (2)
what surrounds the nucleus to separate the contents of the nucleus into distinct compartments?
nuclear envelope - which is compose of a lipid bilayer membrane
the genome is the sum total of
an organisms genetic information (chpt 4 notes)
the nuclear envelope contains pores that allow
passage of material in and out of the nucleus
the smaller molecules enter by what process through the nuclear envelope pores?
diffusion
the larger molecules enter by what process through the nuclear envelope pores?
they must have a nuclear localization sequence (basic amino acid sequence) so they can be translated on cytoplasmic ribosomes to be imported into the nucleus through specific transport mechanism
the nucleolus (contains no membranes) is a region within the nucleus that functions as a ribosome factory for
loops of DNA, RNA poly, rRNA, and protein components of the ribosome
the nucleolus is the site of?
transcription of rRNA by RNA poly I
the nucleolus is largest in cells that are producing?
large amount of protein - the increase of size reflects the increase of ribosome synthesis
the loops of DNA in nucleolus are used as a?
template for ribosomal RNA production
the mitochondria is the site of?
oxidative phosphorylation and produce ATP via the krebs cycle
the inner membrane of the mitochondria is the location of?
the electron transport chain and ATP synthase
the inner membrane of the mitochondria is impermeable to what type of substances?
polar substances
the folding of the inner membrane (cristae) increases what?
the surface area and allows for increased electron transport and ATP synthesis
the endosymbiotic theory suggests that mitochondria?
originated as independent unicellular organism living within larger cells because it possess their own genome that consists of single circular DNA molecules
mitochondria exhibit maternal inheritance which means that
if the female has a disease caused by an abnormality in her mitochondrial genome, her offspring will have that disease
the rough endoplasmic reticulum contains
a larger number of ribosomes bound to their surface
the ribosomes on the RER serve as the site of
protein synthesis for proteins that will enter the secretory pathways
proteins synthesized on RER have three types of pathways:
1) will be secreted into the extracellular environment
2) will be intergral for plasma membrane proteins
3) will be in the membrane or interior of ER, golgi apparatus, of lysosome
signal sequence of a polypeptide is recognized by a signal recognition particle (SRP) which then binds to a
ribosome
the signal sequence is when proteins have a specific
amino acid sequence at their N-terminus
once a polypeptide binds to a ribosome via SRP, the RER has what?
SRP receptor that binds the ribosome-SRP complex to the cytoplasmic surface
once an ribosome-SPR complex binds to cytoplasmic surface, what happens?
translation then pushes polypeptide into ER lumen (page 181)
transmembrane domains are?
hydrophobic amino acid residues found on the interior of integral membrane proteins
transmembrane domains on integral membrane proteins allow for the protein to
pass through lipid bilayer membrane and not removed during translation and are threaded through the ER membrane
targeting signals are needed for
protein traffic for proteins that need to end up elsewhere like the golgi, ER, or lysosome
localization signals are needed for
protein traffic for when proteins made in the cytoplasm need to be sent to an organelle that is not apart of the secretory path (e.g nucleus, mito, or peroxisomes)
the three functions of the golgi apparatus are
1) modification of proteins made in the RER; especially important is the modification of oligosaccharide chains
2) sorting and sending proteins to the their correction destinations
3) synthesizes certain macromolecules, such as polysaccharides to be excreted
the vesicle traffic to and from the golgi apparatus is mostly
unidirectional
*retrograde traffic if proteins escape
the portion of the golgi nearest to the RER is
cis stack
the portion of the golgi is the middle to the RER is
medial stack
the portions of the golgi furthest from the RER is
trans stack
the pathway of the vesicles from the ER is
cis to medial to trans, where each section has different enzymes where the vesicles are modified to be moved to the next
once the vesicles have left the golgi the are transported to the
cell surface and fuses with the cell membrane that the contents of the vesicles are released into the extracellular environment (exocytosis)
constitutive secretory pathway is when vesicles are
immediately sent from the golgi to the cell surface
regulated secretory pathway is when vesicles are
release at specific times in a response from a change in the extracellular membrane
SER function to
detoxification and glycogen breakdown in liver and steroid synthesis in gonads
RER function to
location of synthesis/modification of secretory, membrane-bound, and organelle proteins
lysosomes function to
degradation of biological macromolecules by hydrolysis by acid hydrolases enzyme
lysosome proteins are made in the ____, then modified in the _____ to be released
RER and golgi
lysosomes perform autophagy, which is
self-eating, when organelles have been damaged, they are degraded by the lysosome
ex: mitochondria
lysosomes perform phagocytosis, which is
cell-eating, when lysosomes degrade large particulate matter by engulfing cell
lysosomes perform crinophagy, which is
lysosomal digestion of unneeded/excess secretory products
after hydrolysis processes, the lysosomes will release
molecular building blocks into the cytoplasm for reuse
the enzyme lysosomes use for hydrolysis/degradtion is
acid hydrolases
the environmental pH of lysosomes is around
5, so that the acid hydrolases can be active
peroxisomes function to
metabolize lipids and toxins using H2O2
in the liver, peroxisomes help by
detoxification of drugs and chemicals