Epsilon Flashcards
Differential Association Theory
Differential association theory suggests deviance is learned through interaction with others engaging in deviance. For example, if gang members carry illegal firearms, new recruits quickly learn that this is “normal” and expected. The passage does not suggest that the initial PD individuals learned their behaviors through interaction.
Labelling Theory
Labeling theory suggests that when individuals are labeled as deviant, they will confirm the label by acting deviant. Initial acts (primary deviance) are usually mild but lead to the “deviant” label and social stigma (disapproval by others). Internalization of the deviant label leads to more serious transgressions (secondary deviance). Large-scale deviance (eg, murder) is precipitated by smaller deviant acts (eg, hurting animals).
Conflict Theory
Conflict theory suggests that there is a constant struggle for limited resources between social classes (ie, poor, middle class, wealthy). It is a macro-level (large-scale) theory defining deviance as behavior that does not conform to what is defined as acceptable by social institutions (eg, government, law). The first paragraph describes micro-level (small-scale) deviance and does not suggest conflict between social classes.
Strain Theory
Strain theory predicts that individuals experience tension (strain) when there is a disconnect between goals and the available means for achieving those goals. For example, a parent who is unable to feed her child (goal) because there is not enough food (lack of means) experiences strain. This strain causes individuals to seek deviant means of achieving the goal.
Strain theory suggests that innovation occurs when individuals come up with new strategies for obtaining goals, which is most applicable to the first paragraph’s description of the initial acts of PD by the Vietnamese villagers.
Mental Set
Mental set describes when a problem solver gets stuck on a method that worked in the past but is not right for the current problem. Most villagers were feeding their children as they had always done (eg, certain foods, twice a day), even though this method resulted in malnutrition. Innovative PD strategies involve new methods (eg, feeding children more often), which overcomes a mental set.
Functional Fixedness
Functional fixedness prevents a problem solver from conceiving different uses or functions for an object. Using the edge of a coin to tighten a screw is an example of overcoming functional fixedness to solve a problem. Similarly, eating sweet potato plant leaves, not considered “food” by the rest of the villagers, suggests an ability to overcome functional fixedness.
Economic Capital
Economic capital describes an individual’s tangible financial assets, such as property and money/income. Money confers power and status in society, so economic capital confers advantage on those who possess it.
Social Capital
Social capital includes an individual’s social networks. In other words, it is the people an individual knows who can help that individual advance in society. For example, knowing the president of Harvard could help someone get accepted into Harvard. In this way, social capital can confer advantage, depending on who is part of the social network and how they can help the individual advance.
Human Capital
Human capital describes the collective skill and experience possessed by the individuals who are part of an organization. It is not one of the major types of capital that can be possessed by an individual.
Cultural Capital
Cultural capital describes all of the nonfinancial and nonsocial network assets that confer advantage in society. For example, a degree from a well-respected university such as Harvard confers prestige. Hard work, talent, intelligence, and physical attractiveness are also examples of cultural capital because these are all valued in society. PD, which includes behaviors that allow individuals to get ahead in society, is a form of cultural capital.
Kohlberg Moral Development
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Identity Diffusion
Identity diffusion (low commitment, low exploration): People at this level lack direction, have not explored options, and have not committed to a particular career path or future.
Identity Foreclosure
Identity foreclosure (high commitment, low exploration): People at this level have accepted an identity that they have been assigned (typically by a parent or authority figure) without contemplation or exploration.
Identity moratorium
Identity moratorium (low commitment, high exploration): People at this level are still trying new activities and thinking about a career path, but have not yet arrived at a decision.
Identity achievement
Identity achievement (high commitment, high exploration): People at this level have explored their options and typically feel confident about who they are and what they want to do in the future.
Class consciousness
Class consciousness is an awareness of one’s social status in society (which is necessary for social classes to unite in revolution).
False consciousness
False consciousness refers to an inaccurate assessment of one’s own status.
Heuristics
Heuristics are mental shortcuts that help individuals come to conclusions or make decisions more quickly and without having to consider every single option. Although time-saving, heuristics are not always accurate.
Representativeness Heuristics
Representativeness heuristic proposes that individuals tend to compare things to an existing mental prototype when trying to decide the likeliness of something. In other words, when encountering a new situation, individuals tend to rely on mental representations (of people, events) when drawing conclusions.
Nonverbal communication
Nonverbal communication involves all of the wordless cues that convey meaning when exchanged between individuals. Some examples of nonverbal communication cues include distance between speakers, body language and other physical movements, facial expressions, and vocal modifications (tone, volume, emphasis, inflection). Research suggests that social interaction is largely influenced by nonverbal communication.
Autocommunication
Autocommunication occurs when a message sender is also the receiver. For example, dolphins echolocate by perceiving how the click sounds they have emitted echo back to them. Predator warning calls, communication that alerts other group members (not the individual making the call), is not relevant to auto-communication.
DNA Exonuclease activity
Normally, DNA polymerases are equipped with both 5′-3′ and 3′-5′ exonuclease activity that allows them to remove and replace incorrect nucleotides at either end of a DNA strand. However, the passage states that the Klenow fragment (KF) enzyme described in the experiment does not have 5′-3′ exonuclease activity. KF can only proofread DNA in the 3′-5′ direction on the template strand, so only errors at the 3′ end of the growing strand can be repaired.
Base excision and Nucleotide Excision enzymes
Base excision repair and nucleotide excision enzymes have endonuclease activity to remove damaged bases and mismatched nucleotides from the middle of a DNA strand, respectively.
Fatty acids Fluidity and Permeability
Fatty acids are nonpolar molecules composed of straight hydrocarbon chains with carboxyl groups at one end. Humans synthesize fatty acids with an even number of carbon atoms, and chains usually range from 14 to 18 carbon atoms long. Fatty acids with no carbon-carbon double bonds are described as saturated because each carbon atom has the maximum number of hydrogen atoms possible. In contrast, an unsaturated fatty acid contains one (monounsaturated) or multiple (polyunsaturated) double bonds that may be in either the cis (Z) or the trans (E) configuration.
Unsaturation contributes significantly to membrane fluidity. The carbon-carbon double bonds decrease the melting temperature of fatty acid chains and increase the average space between lipids. As a result, lipids with unsaturated fatty acid chains remain liquid (fluid) at room temperature. The cis configuration is particularly important in cell membranes as it introduces a bend or “kink” in the fatty acid that prevents phospholipids from stacking together and solidifying.
The passage introduces various molecules that have different effects on membrane fluidity. Of the choices listed, the cis bond of the polyunsaturated fatty acid EPA contributes the most to membrane fluidity.
Phospholipids and Experimental separation
Phospholipids (phosphatides) are the main structural lipids of the cell membrane. They are composed of a hydrophilic polar head group, which contains a phosphate, and a hydrophobic tail with one or two fatty acid chains attached to a carbon backbone. Each phospholipid has a unique mass, charge, and solubility due to distinct features in the backbone, polar head groups, and fatty acid chains.
Charge
mass
Solubility
Membrane fluidity and permeability
Membrane fluidity is determined partially by the concentration of cholesterol and the tail length of fatty acids. Cholesterol is a steroid alcohol that maintains membrane fluidity at an optimal level. At high temperatures, it provides rigidity and stabilizes the membrane; at low temperatures, it increases fluidity and prevents the membrane from solidifying. Short unsaturated fatty acid tails increase membrane fluidity by preventing phospholipids from clustering together, but longer saturated tails such as those typically found in sphingolipids induce lipid clustering and decrease fluidity. As described in the passage, changes in cholesterol levels and sphingolipid concentration can lead to diseases such as atherosclerosis and psoriasis, respectively.
Atherosclerosis results from the accumulation of cholesterol into CCDs in the membranes of endothelial cells. Free fatty acids such as O3FA can inhibit CCD formation by separating cholesterol molecules. Therefore, an increase in free fatty acids would help treat atherosclerosis.
Psoriasis is marked by an increase in membrane permeability due to a lack of ceramides in the cell membranes of the SC. The long fatty acid chains in sphingolipids such as cer-EOS cause lipids to cluster and decrease permeability. Therefore, increased sphingolipid levels can help treat psoriasis.
(Choice A) Decreasing LDL would improve atherosclerosis, but ceramides should increase, not decrease, in psoriasis therapies.
(Choice B) Increasing cholesterol would exacerbate atherosclerosis. In addition, glycolipids are lipids with carbohydrates linked to sphingosine by glycosidic bonds and do not affect membrane permeability.
(Choice D) Terpenes are precursors in cholesterol synthesis, so increased terpene concentration could worsen atherosclerosis by increasing cholesterol production. Saturated lipids such as cer-EOS are necessary for psoriasis treatments.
Digestion of Fats
Lipid processing begins in the small intestine (duodenum), where bile salts break down lipid globules into smaller droplets in a process called emulsification. This process results in the formation of spherical structures, known as micelles, composed of a hydrophobic core containing the nonpolar hydrocarbon tails of lipids and an outer shell of polar head groups that make contact with water. The formation of micelles increases the surface area of lipid available for hydrolysis by lipases.
Lipases are enzymes that digest certain emulsified lipids to facilitate their absorption, although some lipids are nonhydrolyzable. Hydrolyzable lipids contain ester bonds that can be cleaved by lipases through the addition of a water molecule (hydrolysis). These lipids include triacylglycerols, phospholipids, sphingolipids, and waxes. Nonhydrolyzable lipids do not contain the ester linkages necessary for lipase digestion. The most common nonhydrolyzable dietary lipids are cholesterol (steroids) and fat-soluble vitamins (A, D, E, and K).
The question states that some dietary lipids are catabolized (broken down) by lipases, whereas others can be absorbed directly. The most accurate description of lipid processing acknowledges that all lipids are emulsified during digestion but only some lipids, including triglycerides and phospholipids, contain hydrolyzable ester bonds.
(Choice A) Waxes are hydrolyzable lipids that consist of fatty acid chains bound to long-chain alcohols by an ester bond.
(Choices B and C) All lipids are emulsified in the aqueous environment of the small intestine. Prostaglandins are nonhydrolyzable lipids that function as signaling molecules in the human body.
Emulsification, Micelles, and Lipases
Emulsification increases the surface area of lipids by breaking down large globules into spherical structures called micelles. Micelles have a hydrophobic core, which contains the nonpolar hydrocarbon tails of lipids, and an outer shell of polar head groups, which make contact with water. Lipases can cleave the ester bonds in hydrolyzable lipids such as triglycerides, phospholipids, and waxes by adding a water molecule (hydrolysis).
Enzyme Effect
- Rate constant Arrhenius equation k = Ae(Ea/RT)
- More transition state
- Decreasing the activation energy
Assumptions of the Michaelis Menten Equation
- Free ligand approximation - states that substrate concentration [S] is constant during the reaction. This approximation is only true during the initial phase of the reaction, before a significant amount of substrate is converted to product. Substrate can also be depleted when it binds the enzyme to form the enzyme-substrate complex (ES). To ensure that ES formation does not significantly impact [S], the total concentration of enzyme in solution should be much smaller than any substrate concentration tested.
- Steady-state assumption - states that the concentration of ES remains constant over the course of the reaction, allowing the rate of product formation to remain constant. Once [S] becomes significantly depleted, ES levels decrease and the reaction slows.
- Irreversibility assumption - states that the reaction proceeds only in the forward direction, and product does not get converted back to substrate. Once enough product accumulates, the reverse reaction occurs at non-negligible levels and further slows the net rate of product formation.
Each assumption holds true only during the initial phase of the reaction, before substrate is depleted on produc accumulates
Enzyme affinity
The Michaelis-Menten constant Km is the substrate concentration at which half of the reaction’s maximum velocity is achieved. It depends on both the rate of substrate binding to the enzyme (ES complex formation) and the rate at which the bound substrate is converted to product (product formation). If the rate of product formation is significantly slower than the rate of ES complex formation, as indicated in the question, then Km essentially measures an enzyme’s affinity for a substrate, or the tendency of an enzyme and a substrate to bind and form a complex.
When product formation is rate-limiting, Km can also be thought of as the substrate concentration at which half of the enzymes in solution are bound. A small Km indicates a strong ES complex because only a small amount of substrate is required to achieve a large amount of complex formation. On the other hand, a large Km indicates a weak ES complex that does not readily form. According to Table 1, CSL-174 has a smaller Km for Hip1 than WKLL-ACC does, so CSL-174 forms a stronger ES complex.
Enzyme catalysis process
The question states that the reaction is carried out at saturating substrate concentration. When substrate concentration [S] is significantly higher than Km (ie, saturating), the enzyme essentially operates at maximum velocity Vmax. Vmax is directly proportional to kcat, so the rate of catalysis under these conditions depends directly on kcat. Therefore, the substrate with the highest kcat (CSL-173) will be cleaved the most (and release the most fluorophores), the one with the second highest kcat (CSL-175) will release the second-most fluorophores, and so forth.
Vmax is also directly proportional to the concentration of enzyme [E]. Therefore, the fluorescence generated at 100 pM enzyme should be ten times greater than the fluorescence generated at 10 pM enzyme. Only one graph (Choice B) has both the correct relative intensity of each substrate and a proportional increase in fluorescence when tested at a greater concentration of protein.
(Choices A and D) These graphs do not show a proportional increase in enzymatic activity when enzyme concentration is increased.
(Choice C) This graph depicts a 10-fold increase in activity at 10 pM enzyme relative to 100 pM enzyme. This is the opposite of the expected trend.
Cofactors and Coenzymes
Cofactors, including metal ions and coenzymes (small organic compounds), bind to the enzyme’s active site and are required for enzymatic activity. The ACC enzyme is active in the absence of citrate, so citrate is neither a coenzyme nor a cofactor.
Gluconeogenesis and Glycolysis notes
The physiological effects of von Gierke disease include low blood glucose and high lactate levels as G6Pase inactivation shuts down the pathways that control them. One of these pathways, gluconeogenesis, consumes lactate to produce glucose, and blocking any enzyme of gluconeogenesis would therefore likely lead to effects similar to those of von Gierke disease. Phosphoenolpyruvate carboxykinase (PEPCK) catalyzes the second step in gluconeogenesis, the conversion of oxaloacetate to phosphoenolpyruvate, and its inactivation can indeed lead to both lactate buildup and glucose depletion in the blood.
(Choice A) Glucose 6-phosphate dehydrogenase (G6PDH) is an enzyme of the pentose phosphate pathway. Although G6PDH uses glucose 6-phosphate as a substrate, it is not involved in gluconeogenesis.
(Choice B) Pyruvate decarboxylase converts pyruvate to acetaldehyde as the first step in the production of ethanol by yeast. Humans do not have this enzyme.
(Choice D) Acyl-CoA dehydrogenase catalyzes the first step in fatty acid catabolism and does not affect blood glucose or lactate levels.
Glucose, hormones, and starch
Hypoglycemia can normally be countered with hormones that upregulate gluconeogenesis and glycogenolysis. Normally, glucagon would help counteract hypoglycemia by upregulating gluconeogenesis and glycogenolysis in the liver. However, because von Gierke disease is insensitive to hormones, it inhibits both processes regardless of glucagon levels. Blood glucose levels must therefore be controlled by diet instead.
Starch is a polysaccharide composed of several linked glucose molecules. It is slowly broken down to its constituent glucose molecules in the digestive tract by the enzyme amylase. As glucose molecules are released from starch, they enter the bloodstream and help counteract hypoglycemia.
(Choice A) Insulin induces the uptake of glucose from the blood into cells and upregulates glucose storage (glycogen production) rather than synthesis (glycogenolysis). It would increase the severity of hypoglycemia.
(Choice B) Vitamin A is a lipid-soluble vitamin that is required for vision, immune system maintenance, and growth. It is not involved in glucose homeostasis.
(Choice C) The hormone epinephrine is more commonly released under stress (fight or flight response) than for maintaining glucose homeostasis. In addition, the passage states that von Gierke disease renders patients insensitive to hormones, making these ineffective treatments.
Kreb’s Cycle note and Passage notes
Kreb’s cycle is not under hormonal control and check if the passage mentions hormonal sensitivity or not
Cori cycle process
During glycolysis, NAD+ is converted to NADH by the enzyme glyceraldehyde-3-phosphate (GAP) dehydrogenase. For glycolysis to continue, NAD+ must be regenerated. Under aerobic conditions, electrons from NADH can be transferred to the electron transport chain (ETC) and ultimately to oxygen. However, in anaerobic conditions, NAD+ cannot be regenerated by the ETC because there is insufficient oxygen to accept electrons. Consequently, NADH donates electrons to pyruvate, which is reduced to lactate in the process. Lactate that builds up from this mechanism must be removed from the system because it can lead to muscle pain and nausea.
The lactate in muscles enters the bloodstream, which carries it to the liver. In the liver, lactate is converted to glucose during gluconeogenesis and is carried back to muscles by the blood. The process of carrying lactate from the muscle to the liver and moving regenerated glucose from the liver back to muscles is called the Cori cycle, which connects gluconeogenesis and glycolysis.
Summary of Mitosis steps
Following cell growth and DNA replication during interphase, somatic (non-sex) eukaryotic cells divide via mitosis, producing two genetically identical daughter cells. Mitosis includes the following phases:
- Prophase: DNA condenses to form chromatids. Each pair of sister (identical) chromatids are joined by a kinetochore to form chromosomes. The nuclear envelope breaks down and centrosomes (microtubule-organizing structures) migrate to opposite poles within the cell. The mitotic spindle is formed as microtubules grow from these centrosomes.
- Metaphase: Chromosomes attach to spindle fiber microtubules at their kinetochores and align at the metaphase plate, a central plane within the cell.
- Anaphase: Sister chromatids are pulled apart by the spindle fibers and move toward opposite poles of the cell. This forms two sets of chromosomes within the cell (one set at each cellular pole).
- Telophase: The nuclear envelope is reformed around each set of chromosomes. Chromosomes decondense and the parental cell undergoes cytokinesis (cytoplasmic division) to produce two identical daughter cells.
In the given scenario, researchers fluorescently labeled various components of actively dividing cancer cells and visualized them under a microscope. Specifically, the nuclear envelope appeared green when viewed by the researchers. In mitosis, the nuclear envelope breaks down during prophase and reforms during telophase. Therefore, green fluorescence would be most intense during telophase as the nuclear envelope reforms.
Spermatogenesis and Oogenesis
In humans, the generation of reproductive cells (gametes) occurs in reproductive glands known as the gonads. Before puberty, stem cells called spermatogonia undergo continuous mitotic divisions within the male gonads (ie, testes) to yield identical daughter cells. At puberty, spermatogenesis (sperm production) begins and continues throughout the male’s life.
In spermatogenesis, some of the daughter cells produced from mitotic divisions of spermatogonia become primary spermatocytes. Primary spermatocytes then become mature sperm via meiosis, a process involving two rounds of cell division known as meiosis I and II. A primary spermatocyte that undergoes meiosis I yields two identical haploid cells labeled secondary spermatocytes. Each secondary spermatocyte then undergoes meiosis II to produce four identical haploid spermatids that develop into mature sperm.
In contrast to spermatogenesis, oogenesis (oocyte production) begins before birth, not at puberty, in the female gonads (ie, ovaries) (Choice A). In the female embryo, oogonia (stem cells) undergo mitosis to produce primary oocytes. Each primary oocyte is surrounded by a saclike structure called a follicle. Although they must also undergo meiosis to mature, primary oocytes begin meiosis I but become arrested at prophase I until puberty. At puberty, one primary oocyte is selected during each menstrual cycle to complete meiosis I.
Unlike in spermatogenesis, meiosis I in oogenesis yields two haploid cells of unequal size, the larger one being a secondary oocyte and the smaller one being a polar body that eventually degenerates (Choice C). The secondary oocyte then begins meiosis II but is arrested at metaphase II. The secondary oocyte completes meiosis II and fully matures only if fertilization occurs. To be fertilized, the secondary oocyte must be released during the ovulation phase of the menstrual cycle. During this phase, the follicle ruptures from the ovary and the oocyte enters the fallopian tube to be fertilized by mature sperm.
(Choice D) Oogenesis begins before birth but ceases in older women when ovarian production of female sex hormones declines (ie, menopause). In contrast, spermatogenesis begins at puberty and continues throughout the male’s life. Neither process occurs continuously throughout an organism’s entire life-span.
Educational objective:
Both spermatogenesis and oogenesis involve cells that undergo meiosis I and II. However, oogenesis in females begins in the female embryo and ends at menopause, whereas spermatogenesis in males does not begin until puberty and continues throughout a male’s life.
The Urethra Function in Women and possibly men
The urethra is the canal through which urine exits the body from the bladder. Endometrial implants affecting the urethra would impair urinary function, not fertility/reproduction.
Vagina
The sexual organ through which sperm enters the uterus. Endometrial implants within the vagina may impair the passage of sperm and decrease the likelihood that an ovulated oocyte will be fertilized