Enzymes, haemoglobin and DNA Flashcards

1
Q

What is an isoenzyme? What is a coenzyme?

A

Enzymes with a different structure and sequence but catalyses same reaction.
Bind with enzyme proteins to form the active enzyme- can be metal ions/ organic.

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2
Q

What are activation-transfer coenzymes? What are oxidation-reduction coenzymes?

A

Form a covalent bond and are regenerated at the end of the reaction
Involved in reactions where electrons are transferred from one compound to another.

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3
Q

What is myoglobin?

A

Found in the muscle and serves as a reserve supply of oxygen and helps O2 movement in muscles.

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4
Q

At the core of haemoglobin and myoglobin, what is there? Termed as what? Iron can be seen as what?

A

A porphyrin ring which holds an iron atom
A heme
Iron= oxygen binding site, seen as a coenzyme

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5
Q

Factors influencing haemoglobin saturation? Disease which does this?

A

Partial pressure of O2 and CO2 in blood, temperature and H+.
Sickle cell anaemia- sticky, sickle-shaped red blood cells. Caused by mutation in haemoglobin.

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6
Q

Disulphide bonds define loop characteristics of what antibody? Variable and constant regions have what?

A

Ig

Heavy and light chains- VH and VL, CH and CL

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7
Q

DNA is synthesised on daughter strand on what ends? Daughter strand is synthesised from what end? Why?

A

From 5’ to 3’

From 5’ to 3’- phosphate at 5’ is used by enzyme as source of energy for reaction to occur

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8
Q

During DNA replication, which enzyme unwinds the double helix by relieving the supercoils? Which enzyme separates the DNA apart by breaking H-bonds? Which synthesises DNA on daughter strand? Starts from where?

A

Topoisomerase.
DNA helicase
DNA polymerase
At a primer

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9
Q

What does single strand binding protein (SSB) do?

What does the primase enzyme do?

A

Keeps two strands of DNA apart whilst synthesis of new DNA occurs- prevents annealing.
RNA polymerase that synthesises the short RNA primers needed to start strand replication process.

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10
Q

What does RNAase H do? Two what are produced at beginning of DNA replication? What enzyme joins the short DNA pieces together into one strand?

A

Removes RNA primers that previously began DNA strand synthesis.
Replication forks.
Ligase joins Okazaki fragments together

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11
Q

At the beginning of transcription, what proteins bind to the promoter region? A transcription complex forms around where?

A

Transcription factors

The TATA box (reads thymine, adenine, thymine, adenine etc.) on 5’ end of the 1st exon

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12
Q

Which enzyme unwinds the double helix? Which enzyme separates the strands? Free mRNA nucleotides bind to complementary bases on what? What binds to thymine?

A

Topoisomerase
DNA helicase
The template strand
Uracil instead of adenine

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13
Q

What enzyme joins the mRNA nucleotides catalysing phosphodiester bonds? Antiparallel mRNA strand has what? Transcription stops where?

A

RNA polymerase
5’CAP head and a 3’Poly A tail
At the stop codon

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14
Q

mRNA leaves the nucleus and attaches to what? First mRNA codon is used as template to bind to what? Amino acid brought on tRNA on what end?

A

An 80S ribosome
tRNA molecules at their anticodon
3’ end

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15
Q

Usual start codon? Stop codons? What does ribosome recognise on mRNA?

A

AUG. UGA, UAG and UAA.

CAP on the 5’ end

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16
Q

What is exon shuffling?

A

Where axons are not in the same order allow new proteins to be made e.g. the immune system.

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17
Q

What are factors turning off expression of genes?

A

Activation of repressors- inhibitors of RNA polymerase binding, enzymes no longer activated and transcription proteins no longer produced.

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18
Q

Types of DNA deletions?

A

In frame= complete codon is removed, out of frame- sequence shifts to right once meaning reading frame is changed. In frame= later onset death typically.

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19
Q

What is a missense mutation?

A

Point mutation resulting in a codon coding for a different amino acid. Can result in silent mutation and a non functional protein.

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20
Q

Codon for sickle cell anaemia goes from what to what?

A

CAG was replaced with CTG.

21
Q

What is a non-sense mutation?

A

Point mutation producing a stop codon– incomplete, usually non-functional protein.

22
Q

What is a splice-site mutation?

A

Affects accurate removal of intron- sequence of intron is translated.

23
Q

What is anticipation?

A

Repeats of nucleotides get bigger when they are transmitted to the next generation resulting in earlier symptoms of greater severity.

24
Q

What are primers used in the PCR? One cycle takes how long?

A

Short synthetic pieces of DNA that have complementary bases to DNA you are trying to synthesise.
5-20 minutes.

25
Q

What reactions does oxygen favour? Features x2? Permits what reactions?

A

Reduction in single electron steps- two unpaired electrons, parallel spin, highly reactive
Combustion, cellular respiration, formation of free radicals

26
Q

What are reactive oxygen species? What do they contribute to?

A

Highly reactive oxygen containing compounds that are free radicals- have single unpaired electron in their orbital/ are freely converted to oxygen free radicals in the cell
Ageing, homeostasis and some cancers

27
Q

How do ROS react with other compounds? Most potent of ROS?

A

They extract electrons usually as hydrogen atoms from other compounds to complete their own orbitals- they initiate free radical chain reactions.
The hydroxyl radical

28
Q

Exogenous sources of ROS? Endogenous sources? How are ROS formed?

A

UV radiation, tobacco and drugs
NADPH and the ETC
Through reduction of oxygen in 4 steps

29
Q

During ROS formation, what is oxygen firstly reduced to? The superoxide is reduced to form what? H2O2 is reduced to what? Hydroxyl further reduced to what?

A

Superoxide(O2 free radical) by a single electron
Hydrogen peroxide (H2O2)
Hydroxyl radical (OH free radical)
Water (H2O)

30
Q

Hydrogen peroxide isn’t a what but is a what and why? It’s what soluble in what? So it can do it? What transition metals catalyse the formation of hydroxyl radical from H2O2 in non enzymatic Fenton reaction? Donate what?

A

Radical, but is a ROS since its readily converted–> hydroxyl radical in cells
Lipid soluble- can cause damage away from site of formation
Fe2+ or Cu2+
A single electron

31
Q

What is the Fenton reaction? What is the Haber-Weiss reaction involving superoxide?

A

H2O2 + Fe2+ –> Fe3+ + OH- and OH free radical

O2 free radical + H2O2 + H+–> O2 + H2O + OH free radical

32
Q

Haber-Weiss and Fenton reactions combine to form what? What does this involve? Other 2 steps?

A

The Haber-Weiss cycle
4 reactions in order to produce an OH free radical and consume H2O2
OH free radical + H2O2–> H2O + O2 free radical + H+
Fe2+ + OH free radical + H+ –> Fe3+ + H2O

33
Q

What do free radicals destroy? They damage the membranes of what? This results in what? What else damaged by OH radical?

A

Proteins, lipids, carbohydrates and nucleic acids
Cells, nucleus, mitochondria and endoplasmic reticulum
The increased permeability of the membrane–> influx of calcium, water and sodium
DNA

34
Q

Diseases associated with free radical damage? What is the respiratory burst? When does this occur? Where does it occur? Known as what?

A

Emphysema, Parkinson’s, acute renal failure and diabetes
Immune system defence against bacteria
Sudden release of ROS by immune cells during phagocytosis
In phagosomes so harmful chemicals don’t get out and damage healthy tissue

35
Q

Immune cells use what to reduce oxygen to superoxide? Neutrophils and monocytes use what to combine H2O2 with Cl- to produce what? ClO- plays a role in what?

A

NADPH oxidase- superoxide then released–> other reactive oxygen species
Myeloperoxidases to produce hypochlorite (ClO-)
Destroying bacteria by damaging bacterial cell membranes

36
Q

Absence/ impairment of function of NADPH oxidase prevents the formation of what and causes what? Leads to what?

A

ROS formation and causes chronic granulomatous disease- builds up pathogens in phagocytes
Severe skin infections with bacteria/ fungi

37
Q

3 antioxidant enzymes?

A

Superoxide dismutase- converts superoxide to H2O2 (non toxic unless–> another ROS)
Catalse- catalyses conversion of H2O2–> H2O and oxygen and protects WBCs against own resp burst
Gluthathione peroxidase- catalyses reduction of H2O2–> water and disulphide (GSSG)

38
Q

2 antioxidant vitamins? Found where and do what?

A

Vitamin E- in liver, free radical scavenger, protect against lipid per oxidation and terminates free radical propagation in membranes
Vitamin C- e.g. ascorbic acid with superoxide and hydroxyl radical–> reduced vitamin E

39
Q

What is the Henderson- Hasselbach equation? Carbonic acid with what forms most important buffering system in body? 3 systems involved in ensuring pH remains in normal range? Buffers do what?

A

pH= pKa+ log[HCO3-]/ [CO2]
Bicarbonate
Blood and tissue buffering, excretion of CO2 by the lungs and renal excretion of H+ and regeneration of HCO3-
Limit changes in H+ ion conc- prevents large quantities of H+ ions produced by metabolism

40
Q

Most important buffer system? Many proteins like albumin contain what in their structure? Proteins form important what therefore?

A

Bicarbonate- efficiency improved because CO2 is removed at lungs and bicarbonate is regenerated by kidneys
Weak acid and basic groups within their structure
Buffering systems

41
Q

Intracellular proteins do what? The protein matrix of bone can do what? Haemoglobin is a powerful what and why? What has the strongest buffering effect? Buffering effect is strongest where?

A

Limit pH changes within cells
Can buffer large amounts of H+ ion in patients with chronic acidosis
Buffer- because it binds both CO2 and H+
Deoxygenated haemoglobin- has strongest affinity for both CO2 and H+
In the tissues

42
Q

CO2 combines reversibly with what in haemoglobin to form what? Released and passes down what in lungs?

A

Terminal amine groups on haemoglobin molecule–> carbaminoheamoglobin
Conc gradient in alveoli

43
Q

Dissolved CO2 passes into RBCs down conc gradient and combines with what? H+ combine with what to form what? Bicarbonate goes where? Where is this reversed in the body?

A

Water to form carbonic acid due to carbonic anhydrase–> bicarbonate and H+ ions
Reduced haemoglobin–> HHb
Back into plasma in exchange for Cl-
In the lungs- H+ ions bound to haemoglobin recombine with bicarbonate–> CO2–> alveoli, reduced haemoglobin is reformed–> tissues

44
Q

Relationship of PaCO2 with alveolar ventilation in lungs? What pH values count as acidosis and alkalosis?

A

Is inversely proportional- small changes in ventilation can have profound effect on H+ conc and thus pH
pH> 7.45= alkalosis
pH< 7.35= acidosis

45
Q

When does respiratory acidosis occur? Most commonly due to what? Less commonly due to what?

A

When the PaCO2 is above the upper limit of normal. (>6kPa)
Decreased alveolar ventilation–> decreased CO2 excretion
Excessive CO2 production by aerobic metabolism- in syndromes such a malignant hyperpyrexia

46
Q

What does respiratory alkalosis result from? Seen in what? Compensation time in respiratory acidosis and alkalosis?

A

Excessive CO2 excretion (PaCO2< 4.5kPa)
Hyperventilation due to anxiety, severe asthma/ moderate pulmonary embolism
Very quick- rapid response to counter alkalosis/ acidosis

47
Q

When may metabolic acidosis result? Most common cause of metabolic acidosis?

A

From an excess of acid due to increased production of organic acids/ reduced buffering capacity due to low conc of bicarbonate
Excess H+ production- from anaerobic metabolism from local/ global tissue hypoxia

48
Q

Why does tissue hypoxia occur?

A

Reduced arterial oxygen content- due to anaemia/ reduced PaCO2
Hypoperfusion
Reduced ability to use oxygen as a substrate