DNA REPLICATION Flashcards

1
Q

DNA REPLICATION IS SEMI-…………………………….

A

CONSERVATIVE

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2
Q

DNA REPLICATION OCCURS IN A ……..’ TO ……..’ DIRECTION BY FORMATION OF ………………………………….. BONDS

A

5

3

PHOSPHODIESTER

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3
Q

INCOMING ………….. UNDERGOES ……………….. ATTACK BY THE …….’ OH ON THE P OF dNTP.

A

dNTP

NUCLEOPHILIC

3

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4
Q

TO REGULATE REPLICATION, A …………………………… IS FORMED.

A

REPLISOME

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5
Q

WHY ARE THE LEADING AND LAGGING STRAND SYNTHESISED DIFFERENTLY

A
  1. DNA IS ANTIPARALLEL

2. DNA POLYMERASE CAN ONLY MOVE IN THE 5’ TO 3’ DIRECTION

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6
Q

WHAT DOES LAGGING STRAND SYNTHESIS REQUIRE

A
  1. DNA PRIMASE (RNA PRIMER)
  2. DNA POLYMERASE
  3. RIBONUCLEASE H
  4. DNA LIGASE
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7
Q

WHAT IS USED TO SEPARATE PAIRED DNA

A

DNA HELICASE BY USE OF ATP

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8
Q

WHAT ISSUES CAN MUTATIONS IN DNA HELICASES GIVE RISE TO

A

WERNERS SYNDROME (A PROGERIA) CAUSED BY AUTOSOMAL RECESSIVE REC1 HELICASE GENE WRN

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9
Q

GIVE ANOTHER EXAMPLE OF A CONDITION CAUSED BY A HELICASE MUTATION

A
BLOOM SYNDROME (CANCER)
LOF IN RECQ FAMILY WHICH MAINTAINS GENOME INTEGRITY
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10
Q

WHAT IS PROCESSIVITY

A

ENZYME ABILITY TO CATALYSE CONSECUTIVE REACTIONS WITHOUT RELEASING IT SUBSTRATE

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11
Q

WHAT ENHANCES PROCESSIVITY OF DNA POLYMERASES

A
  1. SLIDING CLAMP
  2. SINGLE STRANDED DNA BINDING PROTEINS
  3. DNA TOPOISOMERASES
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12
Q

WHAT DOES THE SLIDING CLAMP DO

A
  1. FORMS A COMPLEX WITH A CLAMP LOADER VIA ATP

2. THIS COMPLEX BINDS TO DNA AND DNA POLYMERASE NEAR THE PRIMER

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13
Q

WHAT DO SINGLE STRANDED DNA BINDING PROTEINS DO

A
  1. SSB EXPOSE THE SINGLE STRAND IN THE REPLICATION FORK
  2. PREVENTS THE STANDS BINDING TO ITSELF MAKING BASE PAIRED HAIR PIN
  3. PREVENTS REPLICATION FORK STALLING
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14
Q

WHAT DO TOPOISOMERASES DO

A
  1. RELAX SUPERHELICAL TENSION CAUSED BY THE UNWINDING OF DNA

2. PREVENTS TANGLING

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15
Q

WHAT DOES TOPOISOMERASE 1 DO

A

NICKS AND RESEALS ONE OF TWO DNA STRANDS, NO ATP

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16
Q

WHAT DOES TOPOISOMERASE 2 DO

A

NICKS AND RESEALS BOTH STRANDS OF DNA USING ATP

17
Q

WHAT IS AN ORIGIN OF REPLICATION

A

SPECIFIC DNA SEQUENCES THAT RECRUIT REPLICATION INITIATOR PROTEINS

18
Q

HOW MANY REPLICATION ORIGINS ARE IN YEAST

A

600-700

19
Q

HOW MANY REPLICATION ORIGINS ARE IN E COLI

A

1

20
Q

HOW MANY REPLICATION ORIGINS ARE IN HUMANS

A

100,000+

21
Q

REPLICATION ORIGINS IN YEAST ARE

A

AUTONOMOUSLY REPLICATING SEQUENCES

22
Q

REPLICATION ORIGINS IN HUMANS ARE

A

POORLY UNDERSTOOD

SEQUENCES NEAR LMNB2, MYC
DEFINE BY CHROMATIN STRUCTURE

23
Q

WHAT ARE THE PHASES OF REPLICATION INITIATION IN EUKARYOTES

A
  1. REPLICATOR SELECTION OCCURS IN G1 -
    FORMATION OF PRE- C COMPLEX
  2. ORIGIN ACTIVATION OCCURS IN S PHASE
24
Q

WHAT HAPPENS IN FORMING PRE C COMPLEX

A
  1. ORIGIN RECOGNITION COMPLEX BINDS TO REPLICATOR SEQUENCE
  2. HELICASE LOADING PROTEINS CDC6 AND CDT1 BIND TO ORC
  3. HELICASE MCM2-7 BINDS TO COMPLETE FORMATINO OF PRE C
25
Q

WHAT HAPPENS IN ORIGIN ACTIVATION

A
  1. UNWINDING OF DNA AND RECRUITMENT OF DNA POLYMERASE

2. HIGH LEVELS OF CDK ACTIVITY IN S PHASE ACTIVATES EXISTING PRE RC BUT PREVENTS FORMATION OF NEW PRE RC

26
Q

AT THE END OF REPLICATION RNA PRIMER IS REMOVED BY ………………………….

A

RIBONUCLEASE H

27
Q

RNA PRIMER REMOVAL SHORTENS THE DNA STRAND AT THE …….’ END WHERE ……………… HAS BEEN REMOVED LEAVING A ……….’ OVERHANG

A

5
RNA PRIMER
3

28
Q

WHAT RIBONUCLEOPROTEIN PREVENTS THE SHORTENING OF THE CHROMOSOME AT THE END OF REPLICATION DUE TO THIS ISSUE

A

TELOMERASE

29
Q

WHAT IS THE ROLE OF TELOMERASE

A

ADDS TTAGGG REPEATS TO COMPENSATE FOR THE LOSS OF SEQUENCES EXTENDING THE 3’ FRAGMENT. TO PROTECT CHROMOSOMAL INTEGRITY

30
Q

WHAT IS TELOMERASE

A

A RIBONUCLEOPROTEIN WITH AN RNA COMPENENT FOR TELOMERE REPEATS TO BE SYNETHESISED

31
Q

WHAT IS THE STEPWISE PROCESS OF TELOMERASE

A

TELOMERASE SHUFFLE DONE STEP WISE 6 NUCLEOTIDES AT A TIME