Denise - Enterobacterales Flashcards
Write about the enterobacterales species
Gram negative bacilli
Facultatively anaerobic
Ferment glucose
Reduce nitrate to nitirite
Oxidase negative
Weak catalase positive
Most motile
Some capsulated
List the eight enterobacterales
Lactose fermenters:
Escherichia
Citrobacter
Enterobacter
Klebsiella
Non lactose fermenters
Shigella
Proteus
Salmonella
Yersenia
Write about the four factors of enterobacter pathogenesis
Enteropathogens in the GIT
Uropathogens in the UTI
Opportunistice infections
HCAIs
Give some examples of opportunistic infections caused by enterobactet
Central nervous system infection (Escherichia)
Lower respiratory tract infection
Blood stream infection
What enterobacters can cause a lower respiratory tract infection
Klebsiella
Enterobacter
Escherichia
What enterobacters can cause bloodstream infections
Escherichia
Klebsiella
Enterobacter
What enterobacters can infect the GIT
Salmonella
Shigella
Escherichia
Yersinia
What HCAIs are caused by enterobacter
Blood stream infections
Catheter associated UTIs
Ventilator associated pneumonia
Antimicrobial resistance
What infections does Escherichia, Salmonella and Yersinia cause
infection within the GT and outside the GIT
What infections does Shigella cause
Primarily gastrointestinal
What infections does Klebsiella, Enteobacter and Citrobacter cause
Primarily extraintesitinal
what are sources of enterobacterales
(3)
Faeces from humans/animals containing pathogens/toxins
This is then ingested through food or liquid (milk or water) or on your fingers
Ingestion of organism and/or toxins
what happens upon ingestion of organisms and/or toxins
Organisms multiply and toxins produced but infection remains localised -> diarrhoea -> pathogen in faeces
Organisms invade or toxins are absorbed -> dissemination -> symptoms of systemic infection fever
How are faecal specimens processed in the lab
Evaluate specimens macroscopically based on appearance
Direct molecular detection is carried out - if positive then further testing is carried out
Enrichment broths and sub culturing onto selective plates
What investigation must be done for cryptosporidium/giardia faecal specimens
Smear microscopy
What treatment shous clostridium diff/perfringens and B. cereus feaces undergo?
Pretreatment
Alcohol shock
Toxin detection
Explain the conventional micro process of laboratory investigation of faeces
Faeces -> broth for 24 hours -> selective agar for 24 hours -> biochemical ID -> serotyping
Explain the contemporary micro process of laboratory investigation of faeces
Direct detection via Real Time PCR or EntericBio
Same day detection of target gene
Write about E. Coli
Common constituent of mammalian digestive tracts
Predominant facultative anaerobe
Essential for our well being:
- improves digesiton
- produces essential vitamins
- competitive exclusion
Write about the diversity of E. Coli: Seroty[es
Tradition classification made on the basis of presence of three antigens O, K and H antigens
A combination of O and H antigens have been identified and used to serotype E. Coli
Give some examples of E. Coli serotypes
O157:H7
O104:H4
O26
O103
O111
How does E. Coli acquire virulence genes
Horizontal gene transfer
What are the three steps of horizontal gene transfer
Transfer of virulence genes via plasmids
- Conjugation
- Transduction
- Transformation
Or transfer of virulence genes via bacteriophages
Change of vell to virulence
Virulence genes bringing about:
- adherence
- enterotoxins
- invasiveness
- cytotoxicity
Due to intestinal disease
Describe intestinal pathogenic E. Coli, what are the different strains causing intestinal infection
(6)
Enterotocigenic (ETEC)
Enteropathogenic (EPEC)
Enteroaggregative (EAEC)
Enteroinvasive (EIEC)/Shigella
Diffuse adhering (DAEC)
Shiga toxin producin (STEC) and other enterohemorrhagic (EHEC)
What strain of E. Coli causes extraintestinal infection
ExPEC
- uropathogenic
- strains associated with neonatal meningitis
What infections does enterotoxigenic (ETEC) cause
Watery diarrheae
What infections does enteropathogenic (EPEC) cause
Watery diarrhear of lung duration
Mostly in infants, often in developing countries
What infections does Enterohaemorrhagic E. Coli cause
EHEC
What infections does Enterohaemorrhagic E. Coli (EHEC) cause
Bloody diarrhea
Haemorrhagic colitis and haemolytic uremic syndrome (HUS)
What does infection enteronvasive (EIEC) cause
Blood diarrhea
What infection does enteroadherant E. Coli (EAEC) cause
Persistent watery diarrhea in children and patients infected with HIV
Write about enteropathogenic E. Coli
Induces the formation of pedestals on the host cell surface
Causes infantile diarrhoea mostly in the tropics
Caused by poor hygiene
Explain the pathogenesis of Enteropathogenic E. Coli
Induces the formation of pedestals on the host cell surface
Causes infantile diarrhoea mostly in the tropics
Caused by poor hygiene
Non invasive
Does not produce toxins
Adherence to intestinal mucosa
Small intestine effacement
Plasma encoded protein
What does enteropathogenic E. Coli secrete
Intimin and TIR
What does secretion of intimin and TIR by EPEC do
Destroys microvilli
Loss of absorbtive surface
Leads to diarrhoeae
Write about EnteroInvasive E. Coli (EIEC)
Inflammatory dysentry
Bloody diarrhoea
Large intestine
Intracellular pathogen
fever
Explain the pathogenesis of EIECs
Invades the basolateral surface
- invasion plasmid antigen
- Ipa gene
Lateral spread
Food, water and person-to- person transmission
Write about enterotoxigenic E. Coli
Non inflammatory
Diarrhoae in children in developing countries
Travellers Diarrhoea
Write about the pathogenicity of ETEC
Colonisation factor antigen
LT heat-labile toxin activates adenylate cyclase-increases production of cAMP
ST heat-stable toxin activates guanylate cyclase- increased production of cGMP
Increased fluid secretion = diarrhoae
Write about EHEC
E. Coli 0157
Shiga toxin production
Hemolysin
LEE
Mobile genetic elemets:
- phages
- genomic islands
- plasmid
What infections does E. Coli 0157:H7 cause
Intestinal
- asymptomatic
- watery diarrhoea
- haemorrhagic colitis
Systemic
- haemlytic uremic syndrom HUS
Causes:
- Thrombotic thrombocytopenic purpura (TTP)
- kidney failure
- haemolytic anaemia
What does infection of 0157:H7 cause
- Thrombotic thrombocytopenic purpura (TTP)
- kidney failure
- haemolytic anaemia
What is E. Coli 0157 called
EHEC
STEC
VTEC
Write about the epedemiology of STEC/VTEC infections
Ireland had the highest annual incidence of VTEC between 2009 and 2018 with the exception of 2011
Write about the day 1 investigation of E. Coli
Clinical sample = faeces
Direct detection of shiga toxin genes by entericBio real time PCR
Selective culture on day 1 is positive
What selective media should E. Coli be put up on
MacConkey for all E. Coli
STEC
- STEC chromagar
- CTSMAC (Cefixime Tellurite sorbitol MacConkey)
Explain the use of Enteric Bio real time PCR for detection of VTEC/EHEC
Real-time detection of pathogens directly from faeces
Without pre-enrichment DNA
DNA extraction amplification and detection
Rapid result 3 hours Day 1
Write about Enteric Bio Panels for Bacteria, what can we test for
Shiga toxin (1)
Shiga toxin 2
Salmonella/Shigella/Campylobacter
Yersinia
Vibrio
Clostridium difficile
What parasites can we detect with enteric bio
Cryptosporidium/Giardia
Entamoeba
What viruses can be detected with Enteric Bio
Norovirus, Rotavirus, Adenovirus
Where is the reference lab for VTEC/EHEC
Cherry Orchard
Write about VTEC isolation on CT SMAC agar
Sorbitol fermenters = pink e.g. non 0157H7
Non sorbitol fermenter = colourless e.g. O157H7
Write about STEC Chromagar
Detects most common Shiga-toxin E. Coli serotypes -> mauve colonies
Other enterobacterales are coulerless, blue or inhibited
Write about the day 2 investigation of E. Coli
GNBs
Oxidase negative
Weak catalase positive
Biochemical screen: IMVic Test
What is meant by the IMVic test
I: indole
M: methyl red
V: Voges-Proskauer
iC: citrate
What are the biochemical IMVic results for E. Coli
I: produces indole
M: methyl red positive
V: negative
iC: negative
Write about the indole test
decompose the amino acid tryptophan to indole
accumulates in the medium
Inoculate a peptone water
Incubate 24 hrs @ 37
When indole is combined with Kovac’s Reagent
yellow to cherry red
an oily layer at the top of the broth.