chapter 3 microbiology Flashcards

1
Q

autotrophs

A

use carbon dioxide as carbon source

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2
Q

heterotrophs

A

use organic substances like sugars as their source of carbon

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3
Q

binary fission

A

how bacteria reproduce. This results in a logarithmic growth rate

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4
Q

phases of the bacterial growth cycle

A

lag phase, log phase, stationary phase, decline phase

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5
Q

lag phase

A

Bacteria undergo a period of adaptation with vigorous metabolic activity

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6
Q

log phase

A

rapid division which is determined by environmental conditions

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7
Q

stationary phase

A

is reached when nutrient depletion or toxic products cause growth to slow until death rate equals the binary fission rate

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8
Q

decline phase

A

decline of live bacteria

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9
Q

What is end product inhibition?

A

the end product of a pathway inhibits the first enzyme of the same pathway

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10
Q

catabolite repression

A

when catabolites inhibit synthesis

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11
Q

what are some extracellular factors that modify bacterial growth?

A

temperature- mesophiles like 25-40C, thermophiles like 55-80 C, psychophiles like under20C
PH- 7.2-7.4 for optimal growth

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12
Q

obligate aerobes

A

require oxygen to grow because their ATP generating system is dependent on oxygen as the hydrogen acceptor

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13
Q

facultative anaerobes

A

use oxygen to generate energy if oxygen is present. They also can use the fermentation pathway for energy

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14
Q

obligate anaerobes

A

lack superoxide dismutase or catalase so they dont need oxygen to make energy

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15
Q

microaerophiles

A

work best at low oxygen concentration

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16
Q

name the 2 bacterial enzymes that oxygen

A

superoxide dismutase and catalase

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17
Q

replication bubble

A

strand between the replicating forks

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18
Q

semiconservative replication

A

each daughter cell receives a parental strand and a newly synthesized strand

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19
Q

polymerase

A

main enzyme in DNA replication

20
Q

restriction enzymes

A

cleave double stranded DNA at specific sequences thus deleting foreign nucleotides

21
Q

What is a mutation?

A

a change in a base sequence of DNA

22
Q

what is base substitution and the 3 types

A

when the incorrect base is inserted.
missense mutation is when the base substitution results in a different amino acid
nonsense mutation- base substitution results in a premature stop

23
Q

frame shift mutaiton

A

when one or more base pairs are added or deleted which shifts the reading frame and results in a inactive protein

24
Q

insertion

A

insertion of additional pieces of DNA or bases and cause profound changes in the reading frame

25
Q

what induces mutations?

A

chemicals, radiation, or viruses

26
Q

conjugation

A

mating of bacteria which is controlled by a F plasmid that creates the sex pilus

27
Q

transduction

A

transferring DNA via a virus

28
Q

generalized transduction

A

when a bacteriophage has a piece of its old hosts bacterial chromosome

29
Q

specialized transduction

A

when phage DNA that is integrated into bacterial DNA is excised and carries with it an adjacent part of bacterial DNA

30
Q

transformation

A

“natural” when a bacterium dies and another picks up some of its DNA

31
Q

transposition

A

jumps from one to another

32
Q

homologous recombination

A

2 pieces of DNA with extensive homologous regions pair up and exchange pieces by the processes of breakage and reunion

33
Q

non- homologous recombination

A

not much homology so they use a lot of enzymes inrecombination process

34
Q

plasmids

A

extrachromosomal DNA molecules. They are in both gram negative and positive bacteria

35
Q

Transmissible plasmids

A

transferred by conjugation and contain the sex pilus genes

36
Q

non transmissible plasmids

A

they dont move but can if there is another plasmid in the same bacteria that is transmissible( they pretty much catch a ride)

37
Q

what are some clinical relevance of plasmids?

A

antibiotic resistance, resistance to heavy metals, pili which mediate adherence of bacteria to epithelial cells, exotoxins

38
Q

transposons

A

“jumping genes”, Can code for metabolic or drug resistance enzymes and toxins, Need host to replicate , hide in plasmids,

39
Q

Restriction enzymes

A

break DNA at a specific nucleotide sequence. This creates a “sticky end” which can be combined with a wanted gene and incorporate it into the DNA of the host.

40
Q

DNA probes

A

radioactive markers

41
Q

PCR

A

uses Taq ( watch youtube)

42
Q

multiplex PCR

A

more than one locus are amplified with multiple primers

43
Q

Why is PCR so widely used?

A

for miniscule quantities of DNA, rapid clinical diagnostic procedures, amplification of RNA, comparison of different genomes

44
Q

genomics

A

study of identity of all genes within the chromosomes of a cell

45
Q

proteomics

A

study of proteins expressed by the genome of either an organism, cell, or tissue type.

46
Q

metabolomics

A

study of chemical processes involving metabolites of a cell or an organism