Ch 18 Genetic and Epigenetic Regulation Flashcards

1
Q

What is Epigenetics?

A

Changes in expression in a gene or get of genes without a change in the DNA sequence

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2
Q

DNA Methylation of Cytosine

A

CPG islands if CG sequences (found in promoter sequences). When the C is methylated it inactivates transcription. Unmethylated is when transcription is on.

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3
Q

What is a promoter?

A

Sequence of DNA where DNA polymerase binds at the 5’ end.

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4
Q

What are the effects of DNA Methylation?

A

The methylated DNA attracts repressor proteins that inhibits translation. Mis-regulation is cancerous and in oncogenes and tumor suppressors

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5
Q

Chromatin remodeling

A

Acetylation of histones modifies nucleosomes to make DNA more accessible and increase transcription. When de- acylated transcription is blocked as dna is less accessible.

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6
Q

Why does x-Chromosome inactivation occur in females?

A

They have the ability to produce twice as much protein for x-linked genes. So to regulate this an X chromosome is inactivated allowing equal dosage of expressed X chromosome in males and females

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7
Q

Xist in X chromosome inactivation center

A
  1. The list gene is transcribed and spliced and exist noncoding RNA bings with the x-chromosome INACTIVATION center.Transcription is then allowed to continue and the x-chromosome becomes coated with Xist RNA-the presence of this triggers dna methylation to reduce transcription
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8
Q

Random x chromosome inactivation

A

Will turn one allele off so only one shows

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9
Q

Regulatory transcription factors

A

Promoter sequences and enhancer/silencer sequences

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10
Q

Why are transcription factors and polymerase needed in transcription?

A

to recognize promoter sequences

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11
Q

What is a common example of a promoter sequence?

A

The TATA box

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12
Q

WHY the TATA box?

A

Dna denaturation begins here, and T and A are easier to pull apart because only they only have two bonds

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13
Q

What must assemble on the chromosome before RNA polymerase can bind to the promoter?

A

General Transcription factors

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14
Q

What three things form the Transcription complex

A

TFIID binding to the TATA box and other transcription factors

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15
Q

What is the point in the transcription complex?

A

to bring in RNA polymerase

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16
Q

What is the point in the promoters, Tata box, TFIID?

A

To initiate transcription in Eukaryotes

17
Q

An enhancer is what type of regulator?

18
Q

An silencer is what type of regulator?

19
Q

When can multiple genes be regulated at the same time?

A

When the genes share the same regulatory sequences which bind to the same transcription factor.

20
Q

What is an example of multiple genes being regulated at the same time?

A

The SRE stressor gene- a stressor activates transcription of regulatory protein producing stress proteins instead of normal ones

21
Q

What is RNA editing?

A

When RNA made in the cell is changed by an enzyme. The enzyme changes the base sequence of the primary therefore changing the protein it encodes for. Ex- C to U

22
Q

What regulated transcription?

A

Promoters, T.F, enhancers, and silencers

23
Q

what regulates Translations?

A

Micro Rnas (MiRNA) which are regulator RNA

24
Q

What does miRNA do?

A

Binds to 3’ UTR to target mRNA and translation is inhibited

25
what is a risk complex?
RNA induced silencer complex
26
How does miRNA and the RISC complex regulate translation?
miRNA binds to the RISC complex and targets mRNA sequences to inhibit translation (regulating it)
27
What does a repressor do?
Whenever the repressor is bound it prevents translation
28
What are proteins tagged for breakdown tagged with?
A small protein called Ubiquitin that bind to a proteasome complex or where the protein is digested
29
What two ways can the rate of metabolic pathways be regulated?
Time and amount
30
Negative feedback is when...
there is more than enough so the pathway is shut off so their is no more enzyme creation
31
What does proper gene expression depend on?
promoter and transcription factors binding to enhancers
32
What is expression from one specific gene is prokaryotes controlled by?
One repressor protein (when the gene is transcribed but not translated due to binding of the repressor) or activator protein (when the gene is not even transcribed until the activator protein binds)
33
Positive Transcription
Transcription only occurs when the activator binds
34
Negative transcription
Stops transcription when bound an example is the LAC Operon
35
What is an Operon?
a cluster of genes with a single promoter
36
What does a typical operon consist of?
consists of a promoter, coding genes, and an operator which binds a repressor protein to block transcription
37
In the absence of Lactose
repressor binds to operator and prevents transcription
38
In the presence of Lactose
the repressor changes shape and transcription can occur