Ch 1-3 Microbio Flashcards

1
Q

Describe the environments where microbes live on Earth

A

-Microbes thrive in diverse environments (i.e antartica, underground, air, toxic waste, food, drink, and inside living organisms
-They adapt to extreme conditions, making them both harmful and beneficial

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2
Q

Describe a microbe in terms of size and characteristics

A

-Size: range from 0.2 µm to a mm
-Features:
Require a microscope to be seen; have a genome that encodes proteins for energy, reproduction, and environmental response

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3
Q

Define a genome

A

The complete set of genetic material in an organism, essential for life functions

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4
Q

Distinguish between prokaryotes and eukaryotes

A

-Prokaryotes: No nucleus, smaller, include bacteria and archaea
-Eukaryotes: have a nucleus and organelles, larger in size

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5
Q

Distinguish among bacteria, archaea, and microscopic eukaryotes, and viruses

A

-Bacteria: single celled, no nucleus, found everywhere
-Archaea: similar to bacteria but thrive in extreme conditions
-Microscopic eukaryotes: fungi, algae, protozoa
-Viruses: non-living, require a host to replicate

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6
Q

Describe at least 2 ways that microbes are involved in human food production

A

-Yeasts: for bread, wine, and beer
-Bacteria for yogurt and cheese

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7
Q

Name at least 2 other ways that microbes have affected human history

A

-Positive: antibiotics, fermentation
-Negative: Diseases like smallpox, black death, tuberculosis

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8
Q

Describe how microbes are connected with historic wars/battles

A

Battlefield deaths often caused by infectious diseases (e.g., before antibiotics)

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9
Q

Place on a timeline key events in microbiological history

A

-Observation of contagious diseases ~1550
-Microscopic observation: 1660s (1st microscopist) 1676 (AVL-first to see bacteria)
-Spontaneous generation disproven: 1688 (maggots), 1864 (bacteria)
-Sterilization: 1765
-Antiseptics: 1798
-Pure culture: 1882
-Koch’s postulates/gram staining: 1884
-Antibiotics discovered: 1929
-Antibiotics in use: 1944 (penicillin)

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10
Q

Describe Robert Hooke’s microscopic observations and contribution to biology

A

-Built first compound microscope
-Coined the terms cells with said microscope

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11
Q

Describe Antonie Van Leeuwenhoek’s observations of bacteria

A

-First to observe bacteria using a single-lens magnifier

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12
Q

Describe the debate around spontaneous generation in the 1700s and how it was disproven by Francisco Redi and Lazzaro Spallanzani

A

SG debate: living creatures can arise spontaneously, without parents
-Redi: maggots come from flies, not meat
-Spallanzani: sealed boiled broth –> showed no microbial growth

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13
Q

Describe how Louis Pasteur finally laid to rest the theory of spontaneous generation

A

Swan-neck flask experiment confirmed microbes don’t arise spontaneously (even with access to oxygen)

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14
Q

Describe how John Tyndall discovered spores and killed them

A

Discovered bacterial spores (someetimes boiled growth medium still grows microbes) and methods to kill them with repeated cycles of boiling and resting

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15
Q

Describe the germ theory of disease and contrast it with the four humors theory

A

-Germ theory: microbes cause infectious diseases
-Four humors: blood, yellow bile, black bile, and phlegm determine a person’s temperament (a deficit or imbalance in one causes sickness)

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16
Q

Describe methods to obtain a pure culture of a microbe, including the use of solid media

A

-Pure culture: use of solid media (agar plates) to isolate microbes
-Could also dilute sample into tubes until a tube only gets 0 or 1 bacteria in it

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17
Q

Describe Koch’s postulates defining the causative agent of a disease

A

Criteria for establishing that an infectious microbe is responsible for a
disease:
1. Microbe found in all cases of disease but not in healthy individuals
2. Microbe can be isolated from diseased host and grown in pure
culture
3. Introduction of the microbe into a healthy host will result in the
same disease
4. Microbe can be re-isolated from the newly diseased host, and
shows the same characteristics in culture

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18
Q

Describe the basic theory behind immunization and why it works

A

-How it works: exposure to a weakened pathogen triggers immune response, protecting against future infections
-Edward Jenner: developed the first smallpox vaccine

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19
Q

Describe the use of antiseptics and aseptic environments as ways to prevent microbial infections

A

Diseases can easily be transferred. Washing hands, etc., helps prevent transfer of infections

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20
Q

Define an antibiotic and name the first highly successful antibiotic

A

-Antibiotic: molecules that kill/inhibit bacteria without harming hosts
-Penicillin

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21
Q

Describe a Winogradsky column and its relationship to microbial ecosystems

A

A whole microbial ecosystem is involved in cycling nutrients in the environment. This column demonstrates microbial ecosystems

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22
Q

Describe microbial nitrogen fixation and its importance

A

Conversion of nitrogen gas to ammonia for plants

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23
Q

Describe extremophiles and why they can be useful to humans

A

-Microbes living in extreme conditions (e.g., thermal vents)
-Importance: biotechnology and industrial applications

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24
Q

Define a microbiome and distinguish it from microbiota

A

-Microbiome: all microbes in an environment
-Microbiota: microbes specifically in or on the human body

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25
Q

Describe how bacteria were at the forefront of DNA revolution in biology

A

Bacteria helped uncover DNA structure, gene expression, and genetic engineering

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26
Q

Name several fields in microbiology

A

Experimental, medical, food, industrial, environmental, bioremediation, immunology, and more

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27
Q

Define resolution

A

smallest distance by which two objects can be separated and still be distinguished

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28
Q

Define mm, micrometer, and nanometer, and the factors among them

A

-Millimeter (mm): 1mm = 1k micrometers
-Micrometer (µm): 1 µm = 1k nanometers
-Nanometers (nm): extremely small; used for viruses and molecular structures

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29
Q

Distinguish detection from resolution

A

-Detection: ability to perceive than an object exists, even if not resolved
-Resolution: ability to distinguish two separate objects CLEARLY

30
Q

Define magnification and empty magnification

A

-Magnification: increases the apparent size of an object while enhancing resolution
-Empty mag: enlarges the image without adding info or detail

31
Q

Identify and distinguish microbial shapes such as rods, filaments, cocci, spirals, and hyphal (branching) filaments

A

-Rods (bacilli): cylindrical shapes
-Cocci: spherical shapes; can form pairs (diplococci)
-Filaments: long, thread-like structures
-Spirals: spiral or corkscrew shapes
-Hyphal Filaments: branching filament structures, common in fungi

32
Q

Describe light microscopy and how the wavelength of light is related to resolution

A

-Light microscopy: uses visible light to observe specimens
-Resolution improves with shorter wavelengths of light (blue light resolves finer details than red)

33
Q

Describe the steps required to observe a specimen in a microscope

A
  1. Mount cells on a glass slide or holder
  2. Fix or immobilize the cells if necessary
  3. Apply stains (for certain microscopy types)
  4. Use immersion oil for higher resolution when applicable
  5. Focus the microscope using the stage and ocular lenses
34
Q

Define reflection, refraction, and scattering

A

-Reflection: light bounces off object
-Refraction: light bends when passing through materials of different densities
-Scattering: light spreads after hitting an object smaller than its wavelength

35
Q

Name ways to achieve contrast in both light and electron microscopy

A

-Light: use stains (simple or differential) or phase contrast techniques
-Electron: use metal coatings or cry-techniques

36
Q

Distinguish between a simple stain and a differential stain

A

-Simple: adds uniform color to cells (e.g., methylene blue)
-Differential stain: distinguishes cell types (e.g., Gram stain, acid-fast stain)

37
Q

Describe sample preparation for light and electron microscopy

A

-Light: simple stains or live immobilization
-Electron: requires dehydration, staining, or freezing

38
Q

Briefly describe the basic principles of X-ray diffraction

A

Used for analyzing molecular structures by interpreting X-ray scattering patterns from protein crystals

39
Q

Brightfield microscopy

A

-Light passes through stained specimens
-Pros: simple, effective for stained samples
-Cons: poor contrast for live, unstained cells
-Light background

40
Q

Darkfield microscopy

A

-Detects scattered light; objects appear bright on dark background
-Pros: no stains needed; good for small structures (flagella)
-Cons: requires very clean samples

41
Q

Phase-contrast microscopy

A

-Exploits refractive differences to enhance contrast
-Pros: good for live cells; no stains
-Cons: limited to thin specimens
-Dark cells on gray background

42
Q

DIC microscopy

A

-Uses polarized light for a 3D effect
-Pros: good for live cells
-Cons: complex setup
-gray background with cells with both a light and dark edge

43
Q

Fluorescence microscopy

A

-Fluorescent dyes/proteins emit light at specific wavelengths
-Pros: high specificity; multiple structures imaged
-Cons: requires fluorescence labels
-Glowing structures on black background
-absorbs light at one wavelength and then re-emits light at a longer wavelength

44
Q

Super-resolution microscopy

A

-Combine advanced techniques for finer detail
-Pros: breaks light resolution limits
-Cons: expensive and slow

45
Q

TEM

A

-Electrons pass through thin, stained sections
-Pros: high resolution for internal structures
-Cons: no live cells; labor intensive prep

46
Q

SEM

A

-Electrons scan sample surfaces; metal coated
-Pros: high resolution 3D surface views
-Cons: no internal details

47
Q

Cryo-electron microscopy

A

-Samples frozen and imaged at cryogenic temperatures
-Pros: preserves natural state; 3D tomography
-Cons: expensive equipment

48
Q

X-ray diffraction

A

-Crystals scatter X-rays, revealing atomic structure
-Pros: high detail for proteins
-Cons: requires crystallization

49
Q

Cytoplasm

A

Gel-like fluid inside the cell, containing water, enzymes, and biomolecules essential for life

50
Q

Nucleoid

A

Region in prokaryotes where DNA resides; not enclosed by a membrane

51
Q

Cell (cytoplasmic) membrane

A

Phospholipid bilayer that separates the cell’s interior from the environment and regulates transport

52
Q

cell wall

A

composed of peptidoglycan; provides shape, strength, and resistance to osmotic pressure (mesh bag)

53
Q

Outer membrane

A

Found in gram-NEGATIVE bacteria; contains lipopolysaccharides (LPS)

54
Q

Flagellum

A

helical structure enabling bacterial mobility, powered by proton motor force

55
Q

Describe the chemical composition of bacterial membranes (cytoplasmic and outer) and the cell wall

A

-Cytoplasmic membrane: made of phospholipids and proteins –> semipermeable barrier
-Outer membrane (gram-negative): Contains LPS [lipid A, core polysaccharide, o-antigen]
-Cell wall: composed of peptidoglycan (glycan strands linked by peptide cross bridges)

56
Q

Define the major components of the cytoplasm and their functions: DNA, mRNA, ribosomes

A

-DNA: Genetic material encoding proteins
-mRNA: messenger RNA transcribed from DNA for protein synthesis
-Ribosomes: translate mRNA into proteins

57
Q

Describe the structure and properties of phospholipids and how this relates to membrane structure

A

-Structure: hydrophilic head (faces water) and hydrophobic tails (avoid water) –> form bilayers with hydrophobic cores

58
Q

Describe some of the functions of membrane proteins: transport, structural support, secretion, and environmental sensing

A

-Transport: move molecules across the membrane
-Structural support: provide stability to the membrane
-Secretion: export toxins, enzymes, or communication signals
-Environmental sensing: detect and respond to external stimuli

58
Q

Describe the structure of the bacterial cell wall, its cellular function, and the roles of the glycan strands and peptide cross bridges

A

-Structure: peptidoglycan (mesh bag) with glycan strands (NAG and NAM sugars) and peptide cross-bridges
-Function: prevents lysis due to osmotic pressure and provides cell shape/rigidity

58
Q

Describe the difference between bacterial and archaeal membrane lipids

A

Bacteria have ester-linked fatty acids, while archaea have ether-linked hydrocarbons, making archaeal membranes more resistant to extreme conditions.

59
Q

Define the cell envelope and describe the typical differences between gram positive, gram negative, and mycobacteria with respect the cell envelope

A

-Gram POSITIVE: thick peptidoglycan layer with teichoic acids for additional strength
-Gram NEGATIVE: thin peptidoglycan layer in the periplasm, surrounded by the outer membrane
-Mycobacteria: thick cell wall with mycolic acids and phenolic glycolipids

60
Q

Identify the components of a lipopolysaccharide (LPS)

A

-Lipid A: Anchors LPS.
-Core polysaccharide: Sugar backbone.
-O-antigen: Repeating sugar units, varies by strain

61
Q

Define the periplasm

A

Space between the cytoplasmic and outer membranes in gram-negative bacteria; contains enzymes and transport proteins (cell wall resides)

62
Q

Name three bacterial cytoskeletal elements and define their functions

A

-FtsZ: tubulin homolog; forms Z-ring during division (septation)
-MreB: actin homolog; maintains rod shape
-Crescentin: intermediate filament homolog; promotes curvature in curved bacteria

63
Q

Briefly describe the transcription and translation processes, from gene to protein, and where they take place

A

-Transcription: DNA –> mRNA (in the cytoplasm)
-Translation: ribosomes synthesize proteins from mRNA
-These processes occur simultaneously in bacteria (cytoplasm)

64
Q

Describe cell division and septation

A

-Cell division: cell wall synthesis is required for growth and division
-Septation: formation of new poles during division

65
Q

Describe different ways that bacterial cells grow

A

-Cocci: synthesize new hemispheres during division
-Rods: elongate from sidewalls or grow from the tips

66
Q

Describe the function of cell extensions such as pili and stalks

A

-Pili (Fimbriae): used for attachment to surfaces or cells
-Stalks: membrane bound extensions for surface attachment

67
Q

Describe bacterial flagellum and flagellar motor

A

-Flagellum structure: helical filament of flagellin protein
-Motor: rotates using proton motive force; can reverse direction

68
Q

Define chemotaxis and briefly describe how it works to move bacteria towards and attract via a “biased random walk”

A

-Movement toward chemical attractants via a “biased random walk”
—>Run: straight movement when sensing an attractant (counterclockwise)
—>Tumble: change direction when no attractant detected (clockwise)
-Controlled by chemoreceptors in the membrane