Block B 3 Flashcards

environmental microbiology

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1
Q

what is isolation in pure culture important for

A

detailed studies in controlled (lab) environment
biotechnology applications

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2
Q

what are biofilms

A

assemblages of bacterial cells adhered to a surface and enclosed in an adhesive matrix excreted by the cells

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3
Q

what is the matrix typically composed of in biofilms

A

polysaccharides

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4
Q

what is the microbial hormone that controls biofilm formation

A

c-di-GMP

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5
Q

why do bacteria form biofilms

A

-self defense
-allows cells to remain in favourable niche
-allows bacterial cells to live in close associated with one another

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6
Q

what are the 2 ways of microbial isolation from the environment

A

direct isolation
enrichment culture

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7
Q

what is direct isolation used for

A

enumeration
detailed studies in controlled environments

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8
Q

what is enrichment culture used for

A

isolation (biotechnology)
risk assessment

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9
Q

what are the established medium and incubation conditions for

A

selective for desired organism
de selective for undesired organisms

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10
Q

3 ways that pure cultures can be obtained

A

streak plate
agar plate
liquid dilution

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11
Q

how can anaerobic bacteria grow method

A

agar shake up method
dilutions of mixed cultures in tubes of molten agar

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12
Q

how can aerobic bacteria grow method

A

plates

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13
Q

problems with direct counting

A

cannot distinguish between live and dead cells without special stains
small cells overlooked
phase contrast microscope req if stain not used

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14
Q

2 main ways to perform plate counts

A

spread plate method
pour plate method

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15
Q

to obtain the appropriate colony number the sample counted should always be …

A

diluted

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16
Q

what does MPN stand for

A

most probable numbers

17
Q

how to obtain MPN

A

-serial dilution of inoculum in liquid until final tube shows no growth
-repeat until pure culture obtained
-estimation of microbial numbers for routine sampling

18
Q

how to check for purity when finding MPN

A

-microscopy
-colony characteristics on plate
-test for growth in other media
-check for contamination

19
Q

what must organisms balance

A

growth and death rates

20
Q

what 2 methods are there for organisms to balance growth and death rates

A

oligotrophs
copiotrophs

21
Q

what other names are there for oligotrophs

A

k strategists
autochthonous microbes

22
Q

what other names are there for copiotrophs

A

r strategists
zymogenous microbes

23
Q

what can be said about nutrient uptake with oligotrophs

A

nutrient uptake enzymes with low specificity but high affinity

24
Q

what can be said about nutrient uptake with copiotrophs

A

nutrient uptake enzymes with high specificity but low affinity

25
Q

what undergoes cell rounding and reduction in growth

A

arthrobacter (oligotroph)

26
Q

what spores are metabolically active

A

streptomyces (copiotroph)

27
Q

what does VBNC stand for

A

viable but nonculturable

28
Q

metabolic activity of VBNC bacteria

A

very low

29
Q

what is reduced in VBNC bacteria

A

nutrient transport
respiration
synthesis of macromolecules

30
Q

what does VBNC have the ability to

A

become culturable once resuscitated

31
Q

sources of novel targets

A

synthetic
non synthetic
natural products (fungi, plants, bacteria)

32
Q

3 steps to see zone of inhibition

A

lawn of indicator organism
agar plug of producing organism
filter paper disk soaked in test compound

33
Q

what does MIC stand for

A

minimum inhibitory concentration