Bio2 Flashcards
2.1 Explain what
molecular biology
is
Molecular biology explains living processes in
terms of the chemical substances involved.
-living organisms must do many activities to stay
alive, including replicating DNA, cell respiration,
protein synthesis, photosynthesis, etc.
-all of the molecules and reactions involved are
part of the metabolism, the sum total of all
chemical reactions of the organism.
2.1 Explain why life
on Earth is
described as
“carbon based”.
Carbon atoms can form four covalent bonds
allowing a diversity of stable compounds to exist.
Carbon atom has an atomic number of six,
meaning it has six protons, but indirectly it also
means that carbon has six electrons.
Two of these six electrons form the stable inner
shell, and four are found in the second and
unfilled shell. (valence electron)
Hence, it has to share four electrons with other
atoms in order to create a stable configuration of
eight electrons in total.
Each time carbon shares one of its electrons, a
covalent bond is formed, and carbon always
forms four covalent bonds.
2.1 List out and
explain the four
organic compound
types found within
living things.
Carbohydrates
monosaccharides
disaccharides
polysaccharides
-often referred to as sugar (e.g. glucose, sucrose, fructose, etc.)
-function as a source of energy, also a recognition molecule (e.g.
glycoproteins) and as a structural component (part of DNA / RNA)
Proteins
amino acids
dipeptides
polypeptides
-performs a variety of diverse functions (e.g. enzymes, antibodies,
peptide hormones, amino acids.)
-major regulatory molecules involved in catalysis (all enzymes
are proteins)
Lipids
fatty acids
sterols
triglycerides
phospholipids
-fat when a solid, oil when a liquid (e.g. triglycerides,
phospholipids, steroids)
-a major component of cell membranes (phospholipids and cholesterol)
-may be utilised as a long-term energy storage molecule (fats and oils)
-may function as a signalling molecule (steroids)
Nucleic Acids
nucleotides
DNA
RNA
-molecules most often used in genetics
-genetic material of all cells and determines the inherited features of
an organism
-DNA functions as a master code for protein assembly, while RNA plays
an active role in the manufacturing of proteins
2.1 Skill: Identification and
drawings of common
biochemically important
molecules:
alpha-D-glucose
beta-D-glucose
D-ribose
a saturated fatty acid
a generalized amino
acid. glycerol
List out their
chemical formulas.
alpha-D-glucose:
C6H1206
beta-D-glucose:
C6H1206
D-ribose: C5H1005
a saturated fatty acid
a generalized
amino acid:
NH2 + C + H + R
+ COOH
2.1 How does a
saturated fatty
acid attach to
glycerol in a
triglyceride?
Covalent bonding
between C and O
atom and the
process of
anabolism releases
3 water molecules.
A condensation
reaction between the OH and
glycerol group.
2.1 Explain the
process of
metabolism in
an organism.
Metabolism includes all of the reactions in the
cell, with each reaction catalysed by an enzyme.
-provide a source of energy for cellular
processes (growth, reproduction, etc.)
-enable the synthesis and assimilation of new
materials for use within the cell
So, it involves both the formation
macromolecules, and the breakdown of complex
molecules.
Anabolism is the synthesis of complex molecules
from simpler molecules including the formation of
macromolecules from monomers by
condensation reactions.
to build macromolecules, one monomer to
another monomer is bonded and water is
released in this process. (condensation)
Catabolism is the breakdown of complex
molecules into simpler molecules including the
hydrolysis of macromolecules into monomers.
-macromolecules are turned back into monomers
by a reaction type known as hydrolysis.
-water molecule is a reactant during a
hydrolysis reaction.
2.1 Explain the
experiment that
falsified vitalism.
Vitalism is the theory that all
organic compounds come from
living organisms and cannot be
created artificially.
-German scientist Wohler
accidentally created urea using
inorganic compounds.
-urea is produced in the liver
tissue of many animals and
becomes a component of urine.
-urea is an example of a
compound that is produced by
living organisms but can also be
artificially synthesized.
-showed that a vital “life force” in
living organisms was not needed.
21 Skill:
Identification of
biochemicals such
as sugars, lipids or
amino acids from
molecular
diagrams. Explain
how students can
recognize different biochemicals.
sugars: ratio of H
and O atom is 2:1
lipids: has different
amounts of CH2
amino acid:
contains N atom
and R group. Also
has a carboxyl and
amine group at the
two ends.
2.2 Outline and
explain the
hydrogen bonds
between water
molecules.
Water molecules are polar and
hydrogen bonds form between
them.
Hydrogen and oxygen atoms bond
covalently. Due to the higher
electronegativity in oxygen atoms,
the electrons are not shared
equally. Hence, THE OXYGEN END
OF THE MOLECULE BECOMES
SLIGHTLY NEGATIVE AND THE
HYDROGEN END BECOMES
SLIGHTLY POSITIVE causing the
water molecule to be polar.
Water molecules itself is weak, but
when water molecules bond to
itself due to its polar property, it
becomes strong and hard to break.
2.2 Essay
Question:
Outline the
thermal,
cohesive and
solvent
properties of
water.
water has a high specific
heat capacity;
a large amount of heat causes a
small increase in temperature;
water has a high latent heat of
vaporization;
a large amount of heat energy is
needed to vaporize/evaporate
water:
hydrogen bonds between water
molecules make them cohesive/
stick together;
this gives water a high surface
tension / explains how water rises
up xylem;
water molecules are polar:
this makes water a good solvent;
2.2 Essay
Question:
Describe the
significance of
each property
of water to
living organisms.
cohesion: surface tension - allows
some organisms (e.g. insects) to move
on water’s surface
polarity / capillarity / adhesion •
helps plants transport water
transparency - allows plants to
photosynthesize in water / allows
animals to see
(excellent) solvent - capable of
dissolving substances for transport in
organisms
(excellent) thermal properties (high
heat of vaporization)
- excellent
coolant (high specific heat capacity)
maintains stable temperature for
aquatic animals
ice floats - lakes / oceans do not
freeze, allowing life under the ice
buoyancy
- supports organisms
structure
- turgor in plant cells /
hydrostatic pressure
2.2 Explain why
substances can
be hydrophilic
or hydrophobic.
The polarity of substances decides if
its hydrophilic or hydrophobic.
Substances that are able to dissolve
in water is hydrophilic and polar.
Polar molecules easily dissolve in
water, because a polar solvent will
dissolve polar solutes.
Substances that do not dissolve in
water are hydrophobic, and non
polar. Organic substances that are
non-polar are typically composed of
just carbons and hydrogens
(hydrocarbons) or have large areas of
the molecule where there are only
carbons and hydrogens (e.g.
methane, triglyceride, lipids,
phospholipids - have long chains of
CH2)
2.2 Application:
Comparison of
the thermal
properties of
water with those
of methane.
Compare water
and methane.
Water is a polar substance,
methane is a non polar
substance.
When methane undergoes a
phase change, because of its
lack of polarity, there are no
hydrogen bonds to increase the
molecular motion needed to
change the state of the
substance.
In water, high temperature is
necessary to create the
relatively high rate of molecular
motion needed to enable the
molecules to ‘escape’ from
each other.
2.2 Application:
Modes of transport
of glucose, amino
acids, cholesterol,
fats, oxygen and
sodium chloride in
blood. Explain how
these substances
are transported in
the blood.
The transport of these substances depends
on their solubility in water.
glucose: it’s polar and can be easily dissolved
in water
amino acid: solubility depends on R group,
generally polar; soluble enough to be
dissolved and transported in blood plasma.
cholesterol: non-polar, hydrophobic, not
soluble; transported through lipoprotein
(hydrophilic phosphate heads face outward,
soluble)
fats: non-polar, hydrophobic, not soluble;
transported through lipoprotein. (hydrophilic
phosphate heads face outward, soluble)
oxygen: small enough to be dissolved in
blood plasma, but easily saturated, not
enough for oxygen transport. Hemoglobin in
red blood cells is present to transport oxygen
instead of just relying on blood plasma.
NaCl: soluble and transported through
blood plasma.
2.2 Application:
Explain how
water is used as
a coolant.
Sweat secretion is
controlled by
hypothalamus, and
released through the
glands of the skin. As water
has a high latent heat of
vaporization, a lot of heat is
required to convert water
from liquid to gas phase.
The heat needed for the
evaporation of water in
sweat is taken from the
tissues of the skin, reducing
their temperature.
2.3 Describe the
relationship
between
monosaccharides,
disaccharides, and
polysaccharides.
List examples for
each of these type
of sugars.
Monosaccharide monomers are
linked together by condensation
reactions to form disaccharides and
polysaccharide polymers.
The combination of monosaccharides
always gives out water. This type of
reaction is called condensation.
The bond created is called glycosidic
linkage.Since this is an anabolic
process, this reaction requires ATP.
Monosaccharide: glucose,
galactose, fructose
Disaccharide: maltose,
lactose, sucrose
Polysaccharides: cellulose,
amylopectin, amylose, glycogen
2.3 Explain the
three types of
fats.
Fatty acids can be saturated,
monounsaturated or polyunsaturated.
Fatty acids are saturated fats because
all possible bonds are taken by single
bonds.
Fatty acids with ONE double bond is
MONOunsaturated, while fatty acids
with MULTIPLE double bonds is
POLYunsaturated.
Unsaturated fatty acids are bent in
structure, originate from plant
sources (i.e. oils) and are typically
liquid at room temperatures
Saturated fatty acids are linear in
structure, originate from animal
sources (i.e. fats) and are typically
solid at room temperatures
2.3 Describe the
two types of
unsaturated
fatty acids, and
its structure.
Unsaturated fatty acids can be cis
or trans isomers.
Cis: The hydrogen atoms attached
to the carbon double bond are on
the same side
Trans: The hydrogen atoms
attached to the carbon double
bond are on different sides
Cis will have a bent shape (H atoms
on a same side) irreqular
formations - lower melting points •
liquid at room temp.
Trans will twist, but remain straight.
These fatty acids do not commonly
occur in nature and are typically
produced by an industrial process
called hydrogenation
2.3 Explain how
triglycerides are
formed.
Triglycerides are formed
when condensation
reactions occur between
one glycerol and three fatty
acids
The hydroxyl groups of
glycerol combine with the
carboxyl groups of the fatty
acids to form an ester
linkage
This condensation reaction
results in the formation of
three molecules of water
2.3 Describe the
structure of
cellulose and
starch in plants
and glycogen in
humans.
cellulose, starch, and glycogen are all polysaccharides.
Cellulose is composed of -glucose subunits, has a
structure of a 1-4 carbon linkage. The glucose subunits in
the chain are oriented alternately upwards and downwards;
hence, making the it straight and rigid.
These long, straight chains are joined by (type of)
hydrogen bonds in order to provide stability and strength
to the molecule.
Because it is composed of -glucose, it is indigestible for
most animals (lack the enzyme required to break it down)
Starch: amylopectin and amylose, both are composed of
alpha glucose subunits.
Amylose has a structure of 1-4 carbon linkage, the glucose
molecules orientates to the same side; hence, making it a
helical structure.
Amylopectin is branched, because it can have both 1-4 and
1-6 carbon linkage.
Molecules of both types of starch are hydrophilic but are
too large to be soluble in water.
Glycogen is present only in animals and some fungi and
not plants. It is also composed of alpha glucose subunits.
and can also have a 1-4 and 1-6 carbon linkage, so
therefore is branched.
For all of these it is easy to remove and add glucose
molecules to ir.
2.3 Describe the
function of
cellulose and
starch in plants
and glycogen in
humans.
Cellulose: Cellulose are linked from
bundles called cellulose microfibrils;
together, they have very high tensile
strength to prevent cells from bursting
under high water pressure.
Starch: Starch is stored in plants. In seeds
and storage organs such as potato cells,
glucose is held as starch. It can be also
made as a temporary store in leaf cells
when glucose is being made faster by
photosynthesis than it can be exported to
other parts of the plant.
Glycogen: Glycogen is stored in liver and
some muscles in humans. It is used in cells
where large stores of dissolved glucose
would cause osmotic problems, and
glycogen doesn’t affect osmotic balance.
Glycogen is useful in cells for glucose, and
consequently energy storage.
2.3 Explain the
scientific
evidence for
health risks of
trans fats and
saturated fatty
acids.
Saturated fats and trans fats are proven to be able to
raise blood cholesterol levels, while cis fats can lower
blood cholesterol levels.
Saturated fats increase LDL levels within the body,
raising blood cholesterol levels
Trans fats increase LDL levels and decrease HDL
levels within the body, significantly raising blood
cholesterol levels.
*Low density lipoproteins (LDL) carry cholesterol from
the liver to the rest of the body
Unsaturated (cis) fats increase HDL levels within the
body, lowering blood cholesterol levels
An increase in blood cholesterol levels has a
correlation with an increase in risk of coronary heart
diseases.
When there are high levels of LDL in the bloodstream,
the LDL particles will form deposits in the walls of the
arteries
There is a direct, strong correlation between intake of
trans-fats and saturated fats in food and:
1. all causes of mortality
2. cardiovascular disease
3. coronary heart disease
4. stroke
5. type II diabetes
2.3 Contrast the
function and
advantages of
lipids and
carbohydrates.
SODAS
Lipids:
-storage: acts as long term storage
-osmolarity: less effect on osmolarity
-digestion: less easily digested
-ATP: 6 times more efficient in the amount of
energy that can be stored/ gram of body
mass
-solubility: not water soluble, difficult
to transport
-occupies less space/occupies less
body mass
Carbohydrates:
-short term storage in muscles as glycogen
-osmolarity: more effects on osmotic pressure
(concentration of sugars)
-digestion: more easily digested
-less efficient in energy storage as it also
contains 2g water for /gram of carbs.
-solubility: water soluble, easier to transport.
2.3 Evaluate the
evidence and
the methods
used to obtain
the evidence for
health claims
made about
lipids.
- A positive correlation has been found between the intake
of saturated fats and the incidence of CHD in human
populations
–Counter: Certain populations do not fit this trend (e.g. the
Maasai tribe in Africa have a fat-rich diet but very low rates
of CHD) - Intervention studies have shown that lowering dietary
intakes of saturated fats reduces factors associated with the
development of CHD (e.g. blood cholesterol levels, blood
pressure, etc.)
-Counter: Validity of intervention studies is dependent on
size and composition of cohort, as well as the duration of
the study - In patients who died from CHD, fatty deposits in
diseased arteries were found to contain high
concentrations of trans fats
-Counter: Genetic factors may play a role (e.g. blood
cholesterol levels only show a weak association to dietary
levels)
Evidence Against Health Claims: - Proportion of saturated and trans fats in Western diets
has decreased over the last 50 years, but incidence of CHD
has risen
-Counter: Increased carbohydrate intake may cause
detrimental health effects associated with CD (e.g.
diabetes, obesity)
Counter: Incidence of CHD dependent on a myriad of
factors besides dietary intake (e.g. exercise, access to
health care, etc.)