6.3 DNA Replication Flashcards

1
Q

Replication complex (replisome)

A
  • a set of specialized proteins that assist the DNA polymerases
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2
Q

Helicase

A

the enzyme responsible for unwinding the DNA, generating two single-stranded template strands ahead of the polymerase

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3
Q

DNA topoisomerases

A
  • introduce negative supercoils.
    They do so by working ahead of helicase, nicking one or both strands, allowing relaxation of the torsional pressure, and then resealing the cut strands
  • alleviate this torsional stress and reduce the risk of strand breakage
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4
Q

Semiconservative

A
  • one parental strand is retained in each of the two resulting identical double stranded DNA molecules
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5
Q

How does DNA polyermase read the template strand?

A
  • read the template strand in a 3′ to 5′ direction while synthesizing the complementary strand in the 5′ to 3′ direction.
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6
Q

Which processes occur 5’ to 3’?

A
  • DNA synthesis
  • DNA repair
  • RNA transcription
  • RNA translation (reading of codons)
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7
Q

Leading strand

A
  • stand copied in continuous fashion
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8
Q

Lagging Strand

A
  • strand that is copied in a direction opposite the
    direction of the replication fork.
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9
Q

Primase

A
  • synthesizes a short primer (roughly 10 nucleotides) in the 5′ to 3′ direction to start replication on each strand
  • These short RNA sequences are constantly being added to the lagging strand because each Okazaki fragment
    must start with a new primer
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10
Q

DNA polymerase III

A

-Synthesizes daughter strands for prokaryotes

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11
Q

DNA polymerases α, δ, and ε

A

-Synthesizes daughter strands for eukaryotes
- incoming nucleotides are 5′ deoxyribonucleotide
triphosphates: dATP, dCTP, dGTP, and dTTP

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12
Q

DNA polymerase I

A
  • prokaryotes
  • removes RNA
  • adds DNA nucleotides where the RNA primer had been.
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13
Q

RNase H

A
  • eukaryotes
    -removes RNA
  • adds DNA nucleotides where the RNA primer had been.
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14
Q

DNA polymerase δ (Delta)

A
  • fills in the gaps left behind when RNA primers are removed
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15
Q

DNA polymerase γ (Gamma)

A

replicates mitochondrial DNA

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16
Q

What do DNA polymerases β (Beta) and ε (epsilon) do?

A
  • important to the process of DNA repair
17
Q

What do DNA polymerases δ (Delta) and ε (Epsilon) do when together?

A
  • assisted by the PCNA protein, which assembles into a trimer to form the sliding clamp. The clamp helps to strengthen the interaction between these DNA polymerases and the template strand
18
Q

Limits of DNA polymerase?

A
  • does an excellent job of synthesizing DNA, it unfortunately cannot complete synthesis of the 5′ end of the strand
  • Thus, each time DNA synthesis is carried out, the chromosome becomes a little
    shorter.