10.3 Gene pools and speciation Flashcards
What is a species?
A group of organisms that can interbreed to produce fertile offspring (this definition can only be used with sexually reproducing species).
What is the ability of species to evolve limited by?
The genetic variations that exist.
What is a population?
This refers to individuals of the same species living in the same place and time.
What is a gene pool?
- The set of all the variations of all genes in any population.
- A gene pool is similar to the genome of an individual, but includes the alleles of all individuals in the population.
Alleles in gene pools
- Some alleles will be common in the gene pool, and others will be rare.
- All members of a population share a gene pool.
- When they reproduce, their alleles may combine with any of the alleles found in the gene pool depending on the choice of partner.
Define gene pool
A gene pool consists of all the genes and their different alleles present in an interbreeding population.
What is allele frequency?
The allele frequency, usually expressed as a percentage or proportion, measures how common an allele is in a population.
What is the depth, or richness, of a gene pool measured by?
By the number of alleles and their relative frequencies.
Diagram showing a simplified version of the gene pool of dogs
Characteristic alleles in dog breeds
- Dog breeds have particular characteristic alleles that confer their distinctive body shape and size, their fur color and length, and their personality traits.
- In similar breeds, such as different types of collies or terriers, many of the same alleles are common.
- In breeds that are very different, there will be numerous alleles that are common in one breed but rare in the other.
- However, dogs are a single species.
- Through sexual reproduction between breeds, every possible combination of alleles in the gene pool could exist in individual dogs.
Whenever genetic variation exists, so does ___
The potential for genetic change.
What is genetic drift?
Random fluctuations in allele frequency
In what situations is there little genetic change in a population?
If the population has allele frequencies that are already well adapted to the environment, there is often little genetic change because natural selection acts to maintain the status quo.
What is a prerequisite for evolution?
Genetic variation
What is the original source of all genetic variations?
Mutation in DNA
What is the significance of mutations in DNA
- The original source of all genetic variations is mutation in DNA.
- These mutations are often harmful, sometimes neutral, and occasionally beneficial.
- Though each mutation is a random event, mutations do occur in all living things.
- Mutations form alleles, and evolution occurs whenever there is a change in allele frequencies.
Why does natural selection act on the entire collection of alleles that constitute the individual?
How do new allele combinations in individuals occur?
- Through crossing over and random orientation of homologous chromosomes in meiosis and the fusion of genetic material from two parents.
- Thus, given enough time and a large enough population, alleles that are helpful become more common in the population, even though every individual contains a combination of beneficial and harmful alleles.
Evolution requires that allele frequencies ___
Change with time in populations.
Overview of natural selection and selective pressure
- In a population, individuals with different combinations of alleles may show differential survival and reproductive success because of natural selection.
- Selective pressure leads to the evolution of the population.
What happens when populations are isolated from each other?
- Genetic drift and different selective pressures can cause the populations to evolve differently.
- Over time, when enough differences accumulate, the populations may speciate.
What is selective pressure?
- Environmental factors can affect the rates of survival and reproduction of certain phenotypes (which are determined by alleles).
- This influence of natural selection is called selective pressure.
What is selective pressure caused by?
By both biotic and abiotic factors that change the rate of survival and reproduction of a segment of a population.
Selective pressure can be ___ or ___.
Weak
Strong
Explain how selective pressure can be weak or strong
- For example, an allele that changes fur color to make a predator stand out in its environment might be strongly selected against if it can’t approach prey without being detected.
- If an allele offers slightly better protection against a rare parasite, it might experience a weak, positive selective pressure.
- Over time, the selective pressures of natural selection change allele frequencies and drive evolution.
How many types of effects on phenotype, and therefore allele frequencies, does selective pressure have?
Three
Diagram showing natural selection: stabilizing, directional and disruptive pressures
Explain stabilizing selection
- Stabilising selection is widespread.
- It occurs when the existing variations that are beneficial are already common. Stabilising selection acts against extremes of a trait, for example, the colour of a sand crab.
- Seagulls prey on the crabs.
- The more the colour of the crab deviates from the background colour, the less likely it is to survive.
- New colours may be reintroduced by mutation occasionally, but the stabilising selection exerted by seagulls will maintain the match between the colour of crabs and the sand.
Explain directional selection
- Directional selection occurs when one extreme of a trait offers a survival or reproductive advantage.
- The sand crabs living on the beach would experience directional selection if the background sand colour changed, for example, if flooding covered the beach with darker-coloured silt.
- Then darker-coloured crabs would have an advantage in avoiding predators and would survive longer and have more successful offspring.
- Dark colour alleles would become more common and light colour alleles less common.
- Directional selection increases allele frequencies at one phenotypic extreme and reduces them at the other.
- A classic example of directional selection is increasing neck length in giraffes over many generations.
Explain disruptive selection
- In disruptive selection, the most frequent phenotype becomes a disadvantage, and individuals at both extremes have better rates of survival and reproduction.
- In the sand crab example, perhaps the female crabs inherit a genetic preference for males that stand out against the sandy background.
- This type of preference is fairly common in animal species.
- Choosing a mate that can survive even when it stands out to predators suggests a very strong assortment of other alleles.
- In this case, crabs lighter and darker than the background would have the most success in passing their alleles to the next generation.
Similarities and differences between stabilizing, directional, and disruptive selection
- In stabilizing and directional selection, the population remains a single group.
- In disruptive selection, the population may break into two groups.
- Individuals with extreme phenotypes may also benefit from a genetic preference to mate with similar individuals because their offspring would have less chance of inheriting the disadvantageous intermediate phenotype.
- Thus, disruptive selection may cause one population to split into two, which may eventually become two species.
Natural selection changes allele frequencies in a population because some ___ survive and reproduce more successfully than others.
Individuals
Most blackbirds produce four to five eggs in each clutch.
Blackbirds producing fewer or more eggs than this have reduced fitness.
What type of selection is this?
Stabilizing selection
Natural selection acts against genetic tendencies to have fewer eggs or more eggs.
How is allele frequency usually expressed and what does it measure?
It is usually expressed as a percentage or proportion, and measures how frequently an allele from a specific gene locus occurs in a population
Map showing the frequency of two alleles influencing eye color in a number of human populations.
The ancestral allele codes for darker iris color, while the derived (mutant) allele codes for lighter iris color.
The pie charts show the proportion of the two alleles.
For any gene, the sum of all its allele frequencies must be ___, while individual alleles may be ___
100%
Any fraction of the whole.
Analyzing maps showing the frequency of alleles for the exam
- You are expected to be able to analyze images similar to Figure 1.
- For example, you should be able to identify regions where the ancestral allele is the only one present (Africa in this case), in how many populations the derived allele is the most common (four in this case), and the population with the greatest percentage of the derived allele, and so on.
- Similar images may show more than two alleles, for example, the ABO blood group, but the principles of analysis are the same.
What allele frequency is it helpful to examine when studying evolution and natural selection?
- The allele frequencies between populations, or in one population over time.
- However, for eukaryotes, alleles occur in pairs in the genotypes of individuals.
- Genotype frequency is different than allele frequency.
Table showing the number of individuals with different genotypes for height in a pea plant population
What is a genotype frequency?
The number of individuals with a given genotype as proportion of the entire population.
Genotype frequency in pea plant population table
- In this population, there are two alleles (T and t) for the gene coding for height.
- There are 4,900 homozygous dominant (TT) individuals in the population.
- The frequency of the TT genotype in this population is 0.49, or 49%, as shown below:
f(TT)=4,900/10,000=0.49
- Since there are 10,000 individuals in the population and each individual carries 2 alleles for the height gene, there are 20 000 alleles for the height gene in the population.
- The allele frequencies can be calculated by counting the number of T alleles (or t alleles) and dividing by the total number of alleles.
- Each homozygous tall individual has two copies of the ‘T’ allele.
- In this population, the 4,900 TT individuals have a total of 9,800 copies of the T allele, or 4,900×2.
- Each of the 4,200 heterozygous individuals has only one copy of the T allele (and one copy of the t allele). Thus, the allelic frequency for the T allele will be:
f(T)=((2×4 900)+4 200)/20 000=0.7
-The frequency for the t allele will be:
f(t)=((2×900)+4 200)/20,000=0.3
- By convention, the frequency of one of the alleles (usually the dominant allele) is represented as p and the other as q.
- In this case p= the frequency of the T allele, or f(T).
- Hence, in the pea plant population p=0.7 and q=0.3.
- If there are only two alleles, as in this case, the sum of p and q must be 1.0.
- Every allele is either T or t, so the sum must be 100% of the alleles for height in the population.
How can researchers study selective pressure?
By comparing trends in allele frequencies between geographically isolated populations, or within a population over time.
Hardy-Weinburg principle
This topic relates strongly to the Hardy–Weinberg principle, which is useful in understanding allele frequencies and evolution but is not directly required for this course. The Hardy–Weinberg principle includes two equations:
Allele frequency: p+q=1
Genotype frequency: p2+2pq+q2=1
The genotype frequencies assume that the chance of inheriting an allele is the same as its frequency. Therefore, the chance of being homozygous dominant is p×p (or p2). Heterozygotes may inherit their alleles in two ways: dominant allele from the mother and recessive from the father or vice versa. Thus the chance of being heterozygous is 2×p×q (or 2pq) .
Hardy–Weinberg states that allele frequencies will remain the same from generation to generation unless there are evolutionary influences, such as genetic drift, natural selection, or non-random mating.
Calculations to do with allele frequencies for exam
You should be able to:
- Carry out simple calculations to determine allele frequencies
- Compare the allele frequencies of geographically isolated populations.
The table below shows the allele frequencies for the two co-dominant alleles, C and A, for the lipoprotein lipase (LPL) gene in various human populations.
The frequency of the allele C is highest in the ___
African population
The table below shows the allele frequencies for the two co-dominant alleles, C and A, for the lipoprotein lipase (LPL) gene in various human populations.
Assuming that the size of the Chinese population is 1.2 billion (1.2×10^9), calculate the number of Chinese people who have the genotype AA.
Give your answer to three significant figures.
42,800,000
The probability of a Chinese individual having a copy of the A allele is 0.189. The probability of them having a second A allele is 0.189 × 0.189 = 3.57 × 10-2 = 3.57%.
Therefore the number of individuals in the Chinese population who have the genotype AA = 3.57/100×1.2×10^9 = 42840000 = 4.28 × 107 (answer to 3 significant figures)
The table below shows the allele frequencies for the two co-dominant alleles, C and A, for the lipoprotein lipase (LPL) gene in various human populations.
In which population is the frequency of allele A the highest?
Chinese population
In rabbits, fur texture is controlled by a gene locus with a dominant allele (R) for rough fur and a recessive allele (r) for smooth fur.
In a population of 200 rabbits, 8 are homozygous for rough fur, 64 are heterozygous, and 128 are homozygous for smooth fur.
What is the allele frequency of the r (smooth fur) allele?
80%
To find the allele frequency for r, divide the number of r alleles by the total number of alleles. There are 200 diploid rabbits, and therefore 400 alleles total for the fur texture gene in the population. There are 128 rabbits with the genotype rr, so 256 r alleles in the homozygotes. There is one r allele in each heterozygote (Rr), so 64 copies. The total number of r alleles is 256+64=320. 320/400=0.8 or 80%.
What is speciation?
- A species may gradually change with time to the point where ancestors are so different from their descendants that the two groups would be considered different species.
- This is called speciation.