W8 Transcription Flashcards

1
Q

what are the 2 regulatory elements

A

promotors and enhancers

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2
Q

which direction are promotors

A

proximal

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3
Q

which direction are enhancer

A

distal

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4
Q

what are found on promotors

A

transcription factor binding sites

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5
Q

what section of genes are transcribed but then spliced out

A

introns

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6
Q

where is energy for transcription from

A

hydrolysis of the ribonucleoside
triphosphate

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7
Q

what type of polymerase do eukaryotes use

A

RNA polymerase 2

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8
Q

what does RNA polymerase 2 do

A
  • Unwinds DNA
  • form phosphodiester bonds
  • Proof-reading and correction
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9
Q

why are DNA and RNA polymerase diff

A

Processivity

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10
Q

how does bacteria transcription occur

A
  • sigma factors take RNA polymerase to specific promotor
  • RNA polymerase binds to promotor seq
  • forming a closed complex
  • DNA is unzipped and opens the complex to form a transcription bubble
  • RNA polymerase will elongate by placing RNA nucleotides
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11
Q

describe 5’ capping

A
  • adds a m7G cap to mRNA
  • guanyl transferase adds the G
  • methyl transferase add the methyl group
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12
Q

what is a promotor

A

a region of a gene that polymerase binds to for downstream transcription

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13
Q

how do eukaryotes initiate transcription

A
  • enhancers will interact with transcription binding proteins via a mediator
  • RNA polymerase will elongate after binding to a transcription factor
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14
Q

why is the mRNA strand and coding strand the same

A

both complementary to template strand

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15
Q

how can you tell a cell is prokaryotic

A
  • transcription and translation happening simultaneously
  • contains introns
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16
Q

what is the 5’ cap called

A

m7G cap

17
Q

how does the m7G cap bind to mRNA

A

5’ to 5’ triphosphate bridge

18
Q

why is 5’ capping needed

A

to allow for exports and translation to begin

19
Q

describe how splicing works

A
  • branch point protein finds adenine in intron
  • takes the 2’ OH group and binds to the A on the intron
  • unstable to creates a lariat loop complex
  • exon junction complex forms after intron is removed
20
Q

how do you stop eukaryotic transcription

A
  • use cleavage stimulation factor (CstF)
  • cleavage sequences
  • 3’ polyadenylation creates an A tail at the end of the transcript
21
Q

how can RNA be sequenced

A

NGS

22
Q

how are gene functions studied

A

gene ontology

23
Q

what’s a way to detect the diff between DNA and RNA

A

RNA has a 2’ OH group but DNA doesn’t

24
Q

what is the role of a spliceosome

A

holds regions of splicing in place

25
Q

what are spliceosomes made of

A

snRNAs form complexes with proteins

26
Q

what’s the job of snRNAs in splicing

A

find splice sites and catalyse reactions

27
Q

what is alt splicing

A

can sometimes cut introns/exons

28
Q

what is transcriptomics

A

reads how much a gene is expressed