W2 Chromatin + Chromosomes Flashcards

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1
Q

why do some areas of DNA need to be packed more/less

A
  • to control gene expression
  • more packed = polymerase cant bind for transcription
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2
Q

what does an area of dense transposons mean

A
  • less transposon movement
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3
Q

where are regions of gene expression found

A

euchromatin regions

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4
Q

why does histones have more Lysine and Arginine AA

A

more +ve to bind to negative DNA

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5
Q

what’s good about gene duping

A

prevents mutations from affecting genes

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6
Q

how do mobile DNA elements move

A

by the enzyme = transposase

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7
Q

what is an outcome of transposition

A

can cause mutations

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8
Q

how does the insertion of a transposon affect genes

A
  • disrupt regulatory sequence
  • start mutations at break sites
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9
Q

how to retroviruses exist

A

as ssRNA

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10
Q

how do retroviruses like HIV integrate into host cell

A

conversion of viral RNA to dsDNA

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11
Q

what are retrotransposons

A
  • mobile elements that cant move themselves
  • don’t have protein coat
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12
Q

what are 2 examples of non-retroviral retrotransposons

A

LINEs + SINEs

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13
Q

how much of genome is made of non-retroviral retrotransposons

A

30%

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14
Q

what are the 3 things junk DNA normally known as

A
  • regulatory elements
  • regulatory RNAs
  • ancestral genes
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15
Q

what are introns and their function

A
  • non coding regions within genes
  • gene expression regulation
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16
Q

where are introns found

A

in-between exons

17
Q

when do introns get removed

A

before translation

18
Q

which elements are upstream

A

promoters
enhancers (distal)

19
Q

which elements are downstream

A

downstream enhancers

20
Q

how is the genome actually arranged

A

3D model

21
Q

what are class 1 transposons

A

retrotransposons

22
Q

what are class 2 transposons

A

DNA transposons

23
Q

what are DNA transposons able to do

A

encode their own transposase

24
Q

what do transposase do

A

move mobile elements of the DNA

25
Q

what can be found on the sequence of a retrotransposon

A

reverse transcriptase

26
Q

is retrotransposon found as DNA or RNA

A

DNA

27
Q

what is the process of cut and paste replication

A
  • inverted terminals repeats mark breaksites
  • transposase cuts IRs
  • insert into genome
28
Q

when can transposon duplication occur

A

during S phase

29
Q

how can transposons drive evolution (4 ways)

A
  • gene dupes
  • gene loss
  • regulator functions
  • move non coding region to start coding
30
Q

how many AA monomers for proteins are there

A

20

31
Q

what is a transforming factor

A

molecules which can transfer genetic information

32
Q

what is transforming principle made of

A

carbon
nitrogen
hydrogen
phosphorous

33
Q

if transforming principle is DNA then what is it not

A

RNA or protein

34
Q

how was transforming principle proved

A

chase and hershey experiment