Unit 2 - Biochem and Cells Flashcards

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1
Q

What is the plasma membrane? How does it function?

A

The membrane at the boundary of every cell that acts as a selective barrier, regulating the cell’s chemical composition. It is semipermeable, allowing only certain items to pass into the cell.

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2
Q

What is plasmolysis? Does it take place in plant cells or animal cells? When does it usually occur?

A

A process in plant cells in which the cytoplasm shrivels and the plasma membrane detaches from the cell wall; this occurs when the cell loses water to a hypertonic environment and the vacuole becomes very small.

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3
Q

What does it mean when a cell is prokaryotic?

A

A type of cell lacking a membrane-enclosed nucleus and membrane-enclosed organelles. Prokaryotic cells include bacteria and archaea.

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4
Q

What is a ribosome? What are its components?

A

A complex of rRNA and protein molecules that functions as the site of protein synthesis in the cytoplasm; it consists of a large and a small subunit. In eukaryotic cells, each subunit is assembled in the nucleolus.

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5
Q

What is the rough ER? What is its function?

A

The endoplasmic reticulum with ribosomes attached that makes proteins that will go into the cell membrane, called glycoprotein, which is then transported to the Golgi Apparatus and out of the cell.

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6
Q

What are sister chromatids? Are they involved in mitosis or meiosis, or both?

A

Two copies of a duplicated chromosome attached to each other by proteins at the centromere. While joined, two sister chromatids make up one chromosome. Chromatids are eventually separated during mitosis or meiosis II.

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7
Q

What is the smooth ER? What is its function?

A

The endoplasmic reticulum without ribosomes that makes lipids and works with detoxifying.

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8
Q

What is a somatic cell? Are all cells somatic cells?

A

Any cell in a multicellular organism except a sperm or egg cell. It is not involved in reproduction.

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9
Q

What are glycolipids and why are they important?

A

A lipid that has one or more covalently attatched carbohydrate chians; assembled in the Golgi. They are found in the membranes of eukaryotic cells and extend into the extracellular fluid. They store energy, and serve as cellular markers for cellular recognition. They also help maintain membrane stability and attact cells to eachother to form tissues.

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10
Q

What are glycolipids and why are they important?

A

A protein with short saccharide polymers attached to its side-chains; assembled in the rough ER. Their functions include: cell receptors, cellular markers, biological lubricants, and sometimes intracellular enzymes. For example they are the markers for blood type.

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11
Q

What happened in the fig jam warmup activity?

A

Figs were placed in a bowl with lemon and oranges, and water was drawn out of the figs and the mixture became more liquid. The figs shriveled up as water left the figs. This is an example of a hypertonic solution, since water was moving out of the cell.

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12
Q

What is the difference between bound ribosomes and free ribosomes?

A

Bound ribosomes make proteins in the rough ER and smooth ER that are destined for insertion into membranes, for packaging within certain organelles, or for secretion from the cell. Free ribosomes make proteins used throughout the cytoplasm for use throughout the cell, such as enzymes that catalyze the first steps of sugar breakdown.

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13
Q

What are the differences between channel proteins and carrier proteins? Name an example of each.

A

Channel proteins allow certain molecules to pass through without changing the shape of the protein. An example is an ion channel, which transports ions. Carrier proteins interact with the molecules and change shape to allow the proteins to pass through. An example is a sodium-potassium pump.

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14
Q

What is cotransport?

A

Cotransport is the coupling of the “downhill” diffusion of one substance to the “uphill” transport of another against its own concentration gradient. For example, a plant cell uses the H+ gradient generated by its proton pumps to drive the active transport of amino acids, sugars, and other nutrients into the cell.

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15
Q

What is the difference between an electrogenic pump and a proton pump?

A

An electrogenic pump is a transport protein that generates voltage across a membrane. One major electrogenic pump is the sodium-potassium pump. A proton pump is the main electrogenic pump of plants, fungi, and bacteria, which actively transports protons out of the cell. The pumping of H+ transfers positive charge from the cytoplasm to the extracellular solution.

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16
Q

What is the endomembrane system? What are its functions?

A

The endomembrane system includes the nuclear envelope the endoplasmic reticulum, the Golgi apparatus, lysosomes, various kinds of vesicles and vacuoles, and the plasma membrane. It carries out taste including synthesis of proteins, transport of proteins into membranes and organelles or out of the cell, metabolism and movement of lipids, and detoxification of poisons.

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17
Q

How does mitosis differ from interphase?

A

Mitosis is the process in which a cell divides into two identical daughter cells for growth and repair; it is also used in asexual reproduction. The two daughter cells are identical to its parent cell and contain the exact number of chromosomes (diploid). Interphase is the period in the cell cycle when the cell is not dividing in which cellular metabolic activity is high, chromosomes and organelles are duplicated, and cell size may increase.

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18
Q

What occurs during mitosis? Name the five phases.

A
  1. Prophase: Nucleolus disappears, kinetochores develop for future chromosome orientation (attach to centromere), spindle begins to assemble.
  2. Prometaphase: Attachment of chromosomes to spindle and move towards metaphase plate.
  3. Metaphase: Chromosomes are attached to kinetochore fibers and aligned at the metaphase plate.
  4. Anaphase: 2 sister chromatids of each duplicated chromosome separate at centromere, moving to opposite poles.
  5. Telophase: Spindle disappears, chromosomes decondense and return to chromatin, nuclear envelope reforms, and nucleoli appear, cytokinesis occurs.
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19
Q

What is the structure and function of the nucleolus?

A

Located in the nucleus, they are made of RNA and proteins, and make ribosomes.

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20
Q

What is a nucleoid? Which cells is it specific too?

A

Region of prokaryotic cells where the genetic material is located.

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21
Q

What does the nucleus contain?

A

Membrane enclosed organelle in eukaryotic cells that contains all of the cell’s DNA.

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22
Q

What is the purpose of the nuclear envelope?

A

Encloses the nucleus, has pores that regulates what molecules enter and exit the nucleus.

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23
Q

How does osmosis work?

A

Diffusion of a solvent, usually water, through a semipermeable membrane to a region with more solute.

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24
Q

How is passive transport different than active transport?

A

Transport of molecules across the plasma membrane that does not need ATP.

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25
Q

What happens in phagocytosis?

A

Process where a cell engulfs and ingests outside material.

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26
Q

What is the purpose of the phloem?

A

Plant vascular tissue that transports sugars and synthesized food down from the leaves.

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27
Q

What is a ligand? In what processes does it play a key role in?

A

A molecule that binds specifically to another molecule, usually a larger one. For example, in the specific signal transduction pattern that creates glucose from glycogen, ligand binds to the G-protein - which is embedded in the cell membrane - since it is too big to enter the cell itself. The binding of the ligand causes it to release a subunit, ultimately starting the entire pathway.

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28
Q

What is a lysosome? How is it created inside the cell? What are a lysosome’s key functions as an organelle?

A

A membrane-enclosed sac of hydrolytic enzymes found in the cytoplasm of animal cells and some protists. The function of lysosomes is to digest molecules and break down the cell once it dies. A lysosome is basically a specialized vesicle that holds a variety of enzymes. The enzyme proteins are first created in the rough ER. Those proteins are packaged in a vesicle and sent to the Golgi apparatus. The Golgi then does its final work to create the digestive enzymes and pinches off a small, very specific vesicle, which is a lysosome.

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29
Q

What is nitrogen fixation? Why is nitrogen fixation an important concept for plants?

A

The conversion of atmospheric nitrogen (N2) to ammonia (NH3). Biological nitrogen fixation is carried out by certain prokaryotes, some of which have mutualistic relationships with plants.

30
Q

What is the metaphase plate? What role does it play during the step of metaphase in mitosis?

A

An imaginary structure located at a plane midway between the two poles of a cell in metaphase on which the centromeres of all duplicated chromosomes are located. It is the MIDDLE of the cell where the chromosomes line up, preparing to split during metaphase.

31
Q

What are microfilaments? What are the different jobs of the two types of filaments?

A

A cable composed of actin proteins in the cytoplasm of almost every eukaryotic cell, making up part of the cytoskeleton and acting alone with myosin to cause cell contraction; also known as an actin filament.

Intermediate filaments = thinnest; shape the cell; form nuclear lamina
actin = smaller filaments involved with muscle contraction

32
Q

What are microtubules? How do they differ from microfilaments in cells?

A

A hollow rod composed of tubulin proteins that makes up part of the cytoskeleton in all eukaryotic cells and is found in cilia and flagella.

Thicker and stronger, but smaller than filaments; reinforce the shape of cell and act as tracts so the organism can move.

33
Q

What is the mitochondria? Why is it known as the “powerhouse of the cell”?

A

An organelle in eukaryotic cells that serves as the site of cellular respiration; uses oxygen to break down organic molecules and synthesize ATP.

Powerhouse of the cell; cristae = folds; close to phospholipid bilayer; endosymbiotic theory = mitochondria engulfed

34
Q

What is the general overview of mitosis? What are the five steps entailed in this important process?

A

A process of nuclear division in eukaryotic cells conventionally divided into five stages: prophase, prometaphase, metaphase, anaphase, telophase. Conserves chromosomes number by allocating replicating chromosomes equally to each of the daughter nuclei. (PPMAT)

In prophase, the chromatin breaks down into chromosomes. Spindle fibers form at the opposing poles of the cell.

In prometaphase, the nuclear membrane is broken down, giving direct access to the chromosomes.

In metaphase, the chromosomes align at the metaphase plate.

In anaphase, the spindle fibers attached to the centromeres of the chromosomes pull them apart so the sister chromatids move in opposite directions.

In telophase, the chromosomes are set in distinct new nuclei in the two daughter cells that are genetically identical to their parent cell.

35
Q

What are the three types of spindle fibers that assist in mitosis?

A
#1 - Aster = anchors the the spindle fibers to the side of the cell; one spindle pole on opposing sides of the cell; each pole keeps the spindle fibers anchored when the kinectochores pull apart the sister chromatids
#2 - Kinectochore = attach to the centromere of the chromosome; spindle fiber that pulls each sister chromatid pair (which makes up a whole chromosome) apart during Anaphase
#3 - Interpolar = help the cell to divide, with how the spindle fibers overlap and essentially roll; movement causes the chromosomes to divide and for the cell to split
36
Q

How is the ionization constant calculated when calculating water potential?

A

solute = -iCRT
i = ionization constant
CRT are normally given.
i is the number of particles formed when a molecule is ionized in water.
Sucrose and NaCl are commonly used. While sucrose will have an ionization constant of 1, NaCl will have a constant of 2, since NaCl ionizes into two in water.

37
Q

What are the three types of plastids?

A
#1 - Chromoplast = Color (fruit)
#2 - Chloroplast = green pigment in plants; located in plant cells
#3 - Leukoplast = white color (potatoes)
38
Q

What is the difference between plasmodesmada and desmosomes?

A

Plasmodesmada are in PLANTS. They are the holes in the cell walls of plant cells, ultimately channels, which allow for the transfer between two plant cells. Plant cells are known for having a uniform block set up as the cells remain side by side, making this transfer necessary.
Desmosomes are in ANIMALS. They appear as thickened patches in the cell membrane region between two cells. Desmosomes contain specialized proteins–such as keratin (the same protein found in fingernails and hair), desmoplakin, and desmin filaments–that increase the rigidity of tissues.

39
Q

What are the three stages of plant cells?

A
#1 - Turgid = very firm; water in the system of the plant so the central vacuoles of the cells are full which adds to the support of keeping the plant upright and firm
#2 - Flaccid = limp; lack of water in the system of the plant so the central vacuoles of the cells are shriveled up, which causes lack of support in keeping the plant strong and upright
#3 - Plasmolysis = the central vacuole shrinks and pulls away from cell wall
40
Q

What are the differences between prokaryotic and eukaryotic cells in cell division/replication?

A

Mode of reproduction = pro - binary fission; euk - mitosis
Number of chromosomes = pro - 1; euk - much more than one
Shape of chromosome = pro - circular ring; euk - long strand

41
Q

How do enzymes and the cell cycle connect?

A

Enzymes regulate the passage of cells through these points (cyclins and kinases).
Kinases = enzymes that remove phosphate group from ATP and add it to another protein
Cyclin = proteins activate kinases and in turn activate enzymes
Growth factors = molecules that attach to plasma membrane receptors and bring about cell growth

42
Q

What is the golgi apparatus’s function in a cell?

A

The “shipping department” of the cell; the golgi recieves, sorts, sometimes modifies, and ships products and molecules. It is made of stacked membranous flat sacs, called cisternae. It has a cis face and a trans face, which act, respectively, as recieving and shipping.

43
Q

How are guard cells important to plants and what do they do?

A

They act as the regulators to open and close stomata. When they are turgid the stomata are open and when they are flaccid the stomata are closed. To open the stomata they pump ions in by active transport which causes water to diffuse in and fill their central vacuole.

44
Q

What does the root “hyper” mean? What is hypertonic?

A

“hyper” means over or higher and refers to solute concentration
therefore
A solution that has a higher concentration of solutes in comparison to another solution or cell. Water will flow into this solution from the other one. Has a lower water potential than the other solution.

45
Q

What does the root “hypo” mean? What is hypotonic?

A

“hypo” means under and refers to solute concentration
therefore
A solution that has a lower concentration of solutes in comparison to another solution or cell. Water will flow out of this solution and into the other one. It will have a higher water potential than the other solution.

46
Q

What does the root “iso” mean? What is isotonic?

A

“iso” means same and refers to solute concentration
therefore
Both solutions have an equal concentration of solutes. Their solute water potential is also equal.

47
Q

What is interphase? How big is is (time wise) relative to mitosis/cell division?

A

Includes the G1, S and G2 phases. It is where the cell grows, replicates its DNA and organelles. Interphase is where the majority of cells spend the majority of their time. Interphase does not necessarily lead to mitosis.

48
Q

During what part of mitosis or interphase are condensed chromosomes (when they look like X’s) first seen?

A

Prophase

49
Q

What is the cell theory?

there are three parts

A
  1. All living organisms are composed of one or more cells.
  2. The cell is the most basic unit of life.
  3. All cells arise from pre-existing, living cells.
50
Q

What are the differences between xylem and phloem?

A

Xylem carries nutrients and water up from the roots, while phloem carries sugar and other products from the stems and leaves to other parts of the plant.

51
Q

What are the three types of tonicity?

A

Hypotonic, isotonic, & hypertonic

52
Q

What are the six nutrient cycles?

A

Nitrogen, water, carbon, oxygen, sulfur, and phosphorus

53
Q

What are the differences between plant and animal cytokinesis?

A

Plant cells have vesticles that bring in cellulose and form the cell plate which divides the two daughter cells, whereas animals have a band of microtubules which tighten, and form the clevage furrow, until the two daughter cells are separated.

54
Q

What evidence do we have to support the endosymbiotic theory?

A
  • double membranes on mitochondria and chloroplasts
  • mitochondria and chloroplasts have their own DNA
  • they replicate separately
55
Q

Where are the stomata located?

A

Located on the epidermis of a plant. It is made up of guard cells surrounding a pore called the stoma

56
Q

Why is surface area of a cell important?

A

The area of the surface. This is important when considering cells to know how fast molecules can enter to the center of a cell.

57
Q

When does transpiration occur?

A

When stomata are open, water evaporates out.

58
Q

What does turgor pressure do in a plant?

A

Water pushing out on the plant cell wall, giving plants their structure

59
Q

What are organelles?

A

Specialized structures in a cell

60
Q

What is a vacuole?

A

A space in the cytoplasm of a cell enclosed by a membrane and typically containing fluid

61
Q

What do vesicles do in a cell?

A

A membranous structure that transports cellular products in and out of a cell

62
Q

What does water potential measure?

A

The measure of the tendency of water to move from one area to another

63
Q

What pushes water and nutrients and water up plants?

A

Xylem

64
Q

What is the endosymbiotic theory?

A

It states that eukaryotic cells evolved from a symbiotic relationship between prokaryotic cells living inside another cell. It is theorized that mitochondria and chloroplast were cells living inside a larger cell, since they have their own DNA and replicate independently.

65
Q

How do plants use capillary action?

A

The combined forces of tension and cohesion in water carry it up the small transport tubes, xylem and phloem, of plants.

66
Q

What type of proteins are aquaporins, and how do they function?

A

Integral channel proteins that allow for passive transport, or facilitated diffusion, or water into or out of cells.

67
Q

What is the purpose of cholesterol, and where is it located?

A

A lipid in the plasma membrane of a cell that reduces membrane fluidity.

68
Q

How do plants regulate transpiration?

A

When it gets too hot, the stomata close so that excess water cannot evaporate through the openings.

69
Q

How do you calculate water potential?

A

Water potential is solute potential + pressure potential. The equation for solute potential is s=-iCRT. i is for ions, C is for molar concentration, R is the pressure constant, and T is the temperature in Kelvin.

70
Q

How does pinocytosis work?

A

Cell drinking, where cells engulf fluid surrounding them to get suspended particles and solutes in the fluid.