Unit 2 Flashcards
Colony morphology is defined as
Colony characteristics
Which of the following descriptions will directly facilitate ID of bacteria?
Physical characteristics of colony morphology
An upper respiratory specimen contains many indigenous organisms which may be time consuming, cost prohibitive and insurmountable. What should the microbiologist do?
Differentiate the potential pathogens from the “usual” inhabitants of the upper respiratory tract and direct the diagnostic work up only to potential pathogens
When microbiologists set up a biochemical ID using a commercial system on a suspected pathogen from a culture, they must
Correlate colony characteristics with the suspected ID of the organism
Generally, microbiologists observe the colonial morphology of organisms on primary culture after how many hours of incubation?
18-24 hours
Plate reading is
A comparative examination of bacteria growth on a variety of culture media
MacConkey (MAC) agar is used to
Differentiate between lactose fermenters and lactose nonfermenters
A microbiologist is reading stool culture plates. She is looking for enteric pathogens on the MAC plate. What do they look like?
Clear, colorless colonies
A microbiologist is reading still culture plates. She sees an organism that has dry, pink colony with a surrounding “halo” of pink on MAC. What is a good presumptive ID of this organism?
Escheriochia/citrobacter-like organism
The relative concentration of bacteria on culture plates in directly proportional to
The concentration in which they are present in the clinical specimen
Alpha Beta-hemolysis is
Partial lysing of erythrocytes in a BAP around and under the colony
Beta (beta)-hemolysis is
Complete clearing or erythrocytes in a BAP around and under the colony
Gamma (y)-hemolysis is
When organisms have no lytic effect on the erythrocytes in the BAP
Colonies growing on the SBA have discolored the media to a green color around and under the colonies. This is consistent with which type of hemolysis?
Delta
The colonies growing on the SBA have produced a wide, deep, clear zone around and under the colonies. This is consistent with which type of hemolysis?
Gamma (no hemolysis)
When differentiating colony size on the culture place, what organisms generally have the larger colonies by comparison?
Gram-negative rods
The edge of the colonies is described as all the following except
Glasslike
Colonies of Bacillus anthracite are described as
Medusa’s heads
Swarming is
A hazy blanket of growth on the surface of the agar that extends way beyond the streak lines
A microbiologist is a reading a vaginal culture. She sees the very white colonies that are non-hemolytic on a BAP but appear to have feet. What organism could this possibly be?
Yeast
The elevation of bacterial colonies is described by all of the following except
Pointed
A term used to describe colonies that resemble coins is
Umbilicate
The density of the bacterial colony can be described by all the following, except
Ground glass
The term used to describe colonies that are solid in color and that do not allow any light to pass through it
Opaque
All of the following terms are used to describe the consistency of a bacterial colony, except
Smooth
All of the following colors are commonly used to describe bacteria, except
Orange
What organism forms a small, fuzzy-edged colony with an umbonate center on blood or CHOC agar?
Eikenella corrodens
When looking at a tube of thioglycollate broth, streamers or vines and puffballs are visible. What organism grows like this is thioglycollate?
Streptococcus spp.
All of the following characteristics are used to describe bacterial colony characteristics except
Temperature
Nucleic Acid hybridization is
Coupling of complementary single-stranded nucleic acid molecule
The target nucleic acid strand is
The DNA or RNA sequence unique to the organism of interest
The probe is
Used to detect the target nucleic acid molecule
Common uses of probes include all of the following except
Abnormal WBC detection
The variables that affect the outcome of a given hybridization reaction include all of the following except
Organic acid concentration
How is the stability of a given hybrid calculated?
By determining the melting temperature of a probe
How do high probe concentrations affect a given by hybridization reaction?
Lower the reaction time
Many hybridization assay conditions are based on the expectation that a probe
Has exact complementarity to the target nucleic acid
In hybridization reaction, the pH affects
The stability of double-stranded nucleic acid molecules in solution
The function of the probe is to
Form a duplex with every complementary sequence available in the reaction
Which of the following compounds are used for labeling probes?
Fluorescein
The principle of solid support hybridization (often called blotting) is :
The target sequence is part of the solid support, and the probe, which is in isolation, hybridizes to the target
The southern blot test separates
DNA
The steps for performing the southern blot test include all the following except:
After the labeled probe is hybridized to specific target , the DNA is electrophoresed again, then dried and read
A northern blot is used to detect
RNA
The steps is separated the Northern blot test include all the following except
The membrane is then transferred to a gel so that the RNA can be immobilized in the gel
In situ hybridization, first described in 1969, is where
DNA or RNA can be detected directly in tissue with labeled probes
The principe of in-solubility hybridization is
The hybridization between a labeled probe and target nucleic acids in a liquid solution in tubes or in microtiter wells
The AccuProbe system uses the following technology prinicple
A single-stranded, chemiluminescent-labeled DNA probe is designed to hybridize to the target organisms ribosomal RNA (rRNA) forming a DNA:RNA duplex
PCR includes all of the following except
Gene expression
PCR requires all the of the following components, except
DNA helicase
This piece of instrumentation is a integral part of the PCR process
Thermal cycler
In a PCR, the target DNA is
Exponentially amplified over many cycles of PCR
During the denaturation step in PCR
The target double-stranded DNA is separated into single strands
The goal of the primer annealing step is to
Hybridize oligonucleotide primers to the denatured, single-stranded target DNA strands
What is the purpose of the primer extension?
To produce PCR products
The most commonly used polymerase is
Taq DNA polymerase
This cation is required for the proper function of the Taq DNA polymerase
Mg
One of the most significant drawbacks to PCR is:
The process is easily contaminated
What chemical has been very successful in reducing carryover from PCR assays?
Uracil-N-glycosylate
The most common nucleic acid stain used after separation by agarose gel electrophoresis is
Ethidium bromide
The advantages of real-time PCR over stranded PCR include all the following except
RT-PCR assay will contaminate equipment, reagents, and work spaces
What is the fluorescence resonance energy transfer (FRET) methodology?
The transfer of energy is made from a donor dye molecule to an acceptor dye
What is the principle of the 5’ nuclease assay (TaqMan)?
The Taq DNA polymerase extends from the primers and replicates the template to which the TaqMan probe is annealed. The reporter dye is released by 5’ nuclease activity of the polymerase first and then the probe is released, thus increasing the fluorescence
A Scorpion primer
Uses a single ogliocnucleotide to prime a specific sequence and to detect accumulated PCR product
The most sensitive technique available for detecting and quantifying messenger RNA is
Reverse-transcription PCR
Multiplex PCR is good for
Simutaneously detecting two or more different targets from one PCR tube
Nested PCR is very sensitive and specific because
The assay itself basically serves as a form on internal control and ensures specificity
NASBA stands for
Nucleic acid sequence-based amplification
Accurate epidemiological surveillance of specific organisms is needed for all the following reasons except
The increase in nosocomial infections
All of the following non amplified typing technique are used to differentiate strains of an organism except
Multilocus sequence typing
All of the following amplified typing techniques are used to differentiate strains for an organism, except
PFGE
What is the principle of restriction enzyme analysis of chromosomal DNA?
DNA is extracted and isolated, and digested with a restriction enzyme. The resulting RFLP pattern is analyzed by agarose gel electrophoresis and transferred to a membrane
This method is good for separating large DNA fragments is a low-percentage, low-melt agarose gel by an angled electrical field that periodically changes orientation
PFGE
This method analyzes gene expression polymorphism by analyzing proteins.
Multilocus enzyme electrophoresis
This technique is a popular method of DNA fingerprinting
Random amplified polymorphic DNA
When an organisms genome is sequenced, all of the following information can be obtained except
Disease causing mechanisms
The basis for this method is a microscopic grouping of DNA molecules attached to a solid support mechanism. Silicon chip, glass, or plastic have been used as he solid surfaces. What method is this?
DNA microarray
What is proteomics?
The study of proteins on a cellular level
Relatively nontoxic antimicrobial therapeutic agents include all of the following, except
Heavy metals
Antibiotics work by targeting all of the following except
Bacterial plasmid DNA
Which of the following public health issues in uniting scientists from across the world to develop strategies to address it?
Antibiotic resistance
Mechanism that mediate intrinsic antibiotic resistance include all of the following except
Alternate biosynthetic pathways
Antibiotic mechanism of action target all the following, except
Blocking the Embden-Meyerhof pathway
Both gram-positive and gram-negative bacteria have an inner cytoplasmic membrane that is composed of
Phospholipids and proteins
In gram-positive bacteria, this is substantially thicker and more multilayered than in gram-negative bacteria
Peptidoglycan
The outer membrane of gram-negative bacteria composed of
Lipopolysaccharides, phospholipids and porin proteins
All of the following are beta-lactate antibiotics except
Monoterpenes
Penicillins, cephalosporins, monobactams, and carbapenems all have this ring in their structure that is responsible for inhibiting the transpeptidation reaction, resulting in bacterial lysis and cell death
Beta-lactam
What is the mechanism of action of the glycopeptides (vancomycin and teicoplaninin)?
The glycopeptides bind to the substrate of the transpeptidation enzyme and disrupt the cell membrane construction
Which antibiotic inhibits folate synthesis, proving the essential precursor molecule, pyridine thymidylate, needed in DNA synthesis?
Sulfamethoxazole
This antibiotic affects the DNA replication by targeting topoisomerases II and IV, enzymes considered important in controlling DNA replication
Quinolone
This antibiotic interferes with DNA transcription by blocking of RNA chain elongation
Rifampin
All of the following antibiotics target the 50S ribosomal subunit to prevent mRNA translation in the bacteria, except
Quinolones
These antibiotics are cationic carbohydrate-containing molecules, and their positive charge provides the basis for the interaction with the 30S ribosomal subunit. What class of antibiotic are these?
Aminoglycosides
The members of the polyketide class of antibiotic include all the following except
Oxycycline
The members of the macrolide class of antibiotics include all the following except
Rifamycin
These two classes of antibiotics allow initiation and mRNA translation to begin, but they act by inhibiting peptide elongation
Macrolides and tetracyclines
All of the following are recently approved classes of antibiotics that target protein synthesis, except
Sixth generation cephalosporins
Intrinsic mechanisms of resistance are
Innate characteristics of the bacterium and transmitted to progeny
Acquired mechanims of resistance are those that
Result from acquisition of DNA by acquisition of extrachromosomal DNA
What is porin?
Outer membrane channels that permit the inflow of nutrients and the outflow of wastes
This type of pathogen may demonstrate decreased or loss of porin synthesis in combination with other resistance mechanisms, resulting in multi drug resistant pathogens
Nosocomial
Biofilms are groups of bacteria that are irreversibly attached to surfaces and are embedded in a matrix of extracellular polymeric substances. They are most commonly found on
Indwelling medical devices
Efflux pumps
Function as transported proteins involved in the removal of toxic substances from the interior of the cell to the external environment
The beta-lactam agents consist of all the following antibiotics, except
Vancomycin
Beta-lactamases hydrolyze Beta-lactam antibiotics using two distinct mechanisms: those having metallic-based mechanism of action and those with
A serine-based mechanism of action
How do the Beta-lactamase inhibitors work?
By acting as substrates for the Beta-lactamase and reducing their effect on the antibiotic
Acquired antibiotics resistance mechanisms include
All of the above
*efflux mechanisms
*acquisition of new targets
*modification of existing antibiotic targets
Streptococcus pneumoniae and streptococcus pyrogenes use efflux as an effective mechanism for acquired resistance to
Macrolides
The primary mechanism of resistance to this antimicrobial class is modification by mutations encoding single amino acid changes in these targets. What antimbiotic class is this?
Quinolones
This type of resistance mechanism modifies the antibiotic targets and results in reduced affinity of antibiotics for their microbial targets
Enzyme alteration