Translation Flashcards

1
Q

what does translation do

A

takes RNA codons to amino acids

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2
Q

what is the start codon

A

AUG

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3
Q

what are the three stop codons

A

UGA, UAG, UAA

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4
Q

what does the redundancy of codons do

A

increases the robustness of translation - meaning mutations may not always lead to changes of proteins

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5
Q

what is a wobble base

A

the last base in the codon sequence - first base in the anticodon sequence of tRNA

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6
Q

what do tRNAs do

A

attaches amino acids to RNA

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7
Q

where does tRNA bind to RNA / where does the amino acid attach to tRNA

A

in the anticodon loop / attaches to the ribose at the 3’ end of tRNA

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8
Q

how does the anticodon interact with the codon of the RNA

A

it is the reverse and complement of it

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9
Q

how many codons can one anticodon loop recognize

A

up to 4 different codons - the base pairing of the wobble base is flexible so

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10
Q

what makes up the bacterial ribosome

A

it is 70S and contains a 30S small subunit and a 50S large subunit

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11
Q

where does peptide bond formation occur / what catalyzes peptidodyl transferase

A

in the 50S subunit / the 50S subunit

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12
Q

what are the three binding sites of the ribosome

A

acceptor site, peptidyl-tRNA site, and the exit site

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13
Q

what happens in initiation of protein synthesis

A

30S subunit (initiation complex) binds to mRNA and identifies the RBS (start site)

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14
Q

what pairs with the ribosome binding site

A

16S rRNA

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15
Q

what do all start codons in bacteria bind to

A

fMET-tRNA in the 30S subunit

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16
Q

where does each initiation factor (IF) bind in the ribosome

A

IF3 binds to E site, IF1 binds to A site, IF2 binds ONLY to fMET-tRNA in the P site

17
Q

when does the 50S subunit associate with the 30S

A

when the IFs leave

18
Q

what antibiotics target the 70S ribosome

A

Streptomycin, Tetracycline, Chloramphenicol, Erythromycin

19
Q

what does streptomycin do

A

binds to the 16S rRNA and S12 protein in A site and allows inaccurate codon-anticodon binding leads to mistranslation

20
Q

what does tetracycline do

A

blocks A site so aminoacyl-tRNA can’t bind

21
Q

what does chloramphenicol do

A

binds to P-site and inhibits peptidyltransferase

22
Q

what does ethromycin do

A

binds p-site protein exit channel causing abortive translocation

23
Q

how many GTPs used per amino acid in elongation / what does that mean

A

2 GTPs / making proteins is expensive so do not want to do it unless it is needed

24
Q

when id protein synthesis at its highest rate

A

during the log phase of growth