topnotch generalities Flashcards
microorganisms
enumerate
bacteria
protozoa
microscopic algae
fungi
acellular infections agents enumerate
viruses
viroids
prions
mobile genetic elements enumerate
bacteriophages
plasmids
transposons
animal parasites enumerate
nematodes
trematodes
cestodes
roundworms
nematodes
flukes
trematodes
tapeworms
cestodes
Non-SI unit for sedimentation rate
Svedberg unit
is the rate at which particles of a given size and shape travel to the bottom of the tube under centrifugal force
svedberg unit
this reflects at which a molecule sediments under the centrifugal force
svedberg unit
svedberg is a measure of time defined exactly
10^-13 s (100 fs)
replicates through binary fission
bacteria
how does fungi replicate
budding or mitosis
how does protozoa and helminths replicate
mitosis
protein capsid
viruses
rigid wall containing peptidoglcan
bacteria
rigid wall contaning chitin
fungi
flexible membrane
protozoa and helminths
Which of the following microorganisms lack membrane sterols
bacteria
Which organism has abundant sterols in membrane, 10% of dry weight
yeast
mobile genetic elements
transposons
Jumping genes
transposons
obligate intracellular parasites of plants
acellular
with naked RNA
no human diseases known
viroids
Transposons are DNA pieces that move readily from one site to another between DNA of what type of organisms
bacteria
plasmids
bacteriophages
code for drug-resistant enzymes , toxins or metabolic enzymes
transposons
cause mutations in gene into which they insert or alter expression of nearby genes
transposons
Which of the following infectious agents lack nucleic acids?
a. viruses
b. bacteria
c. viroids
d. prions
d. prions
protein only
noncellular infectious proteins
prions
naked proteins that have the same amino sequence as certain human cell surface proteins but folded differently
prions
prions are resistant to
nucleases
proteases
many chemicals and
normal autoclaving
prions are associated with what condition
spongiform encephalopathies
Creutzfeldt- Jakob’s disease, kuru, fatal familial insomnia
What is the pathogenic mechanism of prions
dysfunction due to protein misfolding
appearance of the VACUOLATED NEURONS with loss of function and the lack of an immune response or inflammation
spongiform encephalopahies
Human prior diseases
Creutzfeldt- Jakob disease Kuru Variant CJD Gertsmann- Straussler- Scheinker (GSS Syndrome) Fatal Familial Insomnia Sporadic fatal insomnia
etiology of CJD
infection
etiology of Kuru
cannibalism
difference of manifestation of CJD and Kuru
CJD - higher cortical dysfunction-> dementia
Kuru - cerebellar manifestation -> dysdiadochokinesia, ataxia, myoclonic jerks
Kuru means
kuria or guria -> to shake
clinical features of kuru
cerebellar ataxia
voluntary tremor
involuntary movements ( choreoathetosis, myoclonic jerks, fasciculations)
Euphoria, dementia, emotional liability, loss of grasp of reflexes
the most infectious organ
brain
enumerate animal prion diseases
scrapie (sheep and goats)
Transmissible mink encephalopathy
Bovine spongigorm encephalopathy (BSE) - mad cow disease
Chronic wasting disease (Mule, deer, elk)
susceptible population to prion diseases
women and children of the Fore tribe in New Guinea
neurosurgeons and brain surgery patients
transplant surgeons and transplant patients
manifestations of human prion disease
loss of muscle control shivering myoclonic jerks and tremors loss of coordination rapidly progressive dementia death
Treatment and prevention of prion diseases
no tx available
cessation of ritual cannibalism
elimination of animal products from livestock field
3 shapes of bacteria
cocci (sphere)
bacilli (rods)
spirochete (spirals)
cocci are arranged in 3 patterns
pairs (diplococci)
chains (streptococci)
clusters (staphylococci)
all bacteria have a cell wall composed of peptidoglycan except
mycoplasma - no cell wall
peptidoglycan is composed of glycan and peptide side chains cross-linked by
transpeptidase
structures in bacterial cell wall the facilitate passage of small, hydrophilic molecules into the cell
porin proteins
in the outer membrane of gram - bacteria this allow entry of essential substances such as sugars, amino acids and vitamins
channels
lysozymes are enzymes that kill bacteria by cleaving which part of cell wall
The link between the N-acetylglucosamine and N-acetylmuramic acid is cleaved by lysozyme.
thicker, multilayer of peptidoglycan in cell wall
presence of teichoic acids
gram + cells
presence of thinner peptidoglycan
no teichoic acids
(+) lipopolysaccharide
(+) periplasmic space
gram -
what is the endotoxin that forms the outer membrane of gram (-) bacteria
lipopolysaccharide
All gram (+) bacteria have no exotoxin except
LISTERIA MONOCYTOGENES
procedure for gram staining
steps 1 -4
primary stain - crystal violet
mordant - iodine
decolorizing agent - acetone
counterstain 0 safranin
VIAS
enumerate all bacteria not seen in gram stain
Treponema
Rickettsiae
Mycobacteriae
Mycoplasma spp
Legionella spp
Chlamydiae
Spirochetes
These Rascals May Microscopically lack color S
why is this bacteriae not seen on gram stain and alternative approach
mycobacteria
too much lipid in cell wall so dye cannot penetrate
why is this bacteriae not seen on gram stain and alternative approach
spirocheres
too thin to see
darkfield microscopy
why is this bacteriae not seen on gram stain and alternative approach
mycoplasma
no cell wall
very small
none
(serologies)
why is this bacteriae not seen on gram stain and alternative approach
legionella
poor uptake of counterstain
silver stain
why is this bacteriae not seen on gram stain and alternative approach
chlamydiae
intracellular
very small
giemsa stain -> inclusion bodies
why is this bacteriae not seen on gram stain and alternative approach
rickettsiae
intracellular, very small
giemsa/ tissue stains
which component of the gram negativecell wall is responsible for its nonspecific endotoxin activity
Lipopolysaccharide
which of the following is the OLDEST acid- fast staining method which requires heating the specimen during procedure
Ziehl-Neelsen method- hot plate method
method of Ziehl-Neelson
Primary dye - Carbol fuchsin
Decolorizer- acid alcohol
Count stain - methylene blue / malachite green
structure of bacteria that protects against phagocytosis
capsule (polysaccharide)
space between the plasma membrane and outer membrane of bacteria
periplasm
essential components of bacteria
cell wall cytoplasmic membrane ribosome nucleiod mesosome periplasm
non essential components of bacteria
capsule pilus or fimbria glycocalyx flagellum spore plasmid granule
component of bacteria for attachment and conjugation
pilus or fimbria
structure in bacteria that mediates adherence to surfaces
glycocalyx
protein in bacteria that mediates motility
flagellum
structure in bacteria with keratin like coat and dipicolinic acid that provides resistance to head, and chemicals
spore
structure in bacteria that provides genes for antibiotic resistance and toxins
plasmid
structure in bacteria that is site of nutrients in cytoplasm
granule
extrachromosomal, double stranded, circular DNA capable of replicating independently of the bacterial chromosome
plasmids
when plasmids are integrate into the bacterial chromosome, it is called
episomes
ALL bacterial capsules are composed of polysaccharide except
bacillus anthracis ( polypeptide of D-glutamate)
spore forming bacteria are
gram (+) rods such as bacillus and clostridium
can plasmids replicate independent of bacterial
chromosome
T/F
T
toxic proteins produced by certai bacteria that are lethal for other bacteria
bacteriocins
Which of the bacterial structures necessitate the use of soap-based products over the alcohol rubs?
spores
Alcohol based hand sanitizers may be effective against the ff organisms, except
Spore forming bacteria such as clostridium and bacillus
is a coordinated process of increase in individual cell mass and size and duplication of chromosome, followed by cell division
bacterial growth
bacterial reproduction occurs via
binary fission
bacterial growth phase
zero growth rate
adaptation to new environment
vigorous metabolic activity without binary fission
Phase 1 - lag phase
bacterial growth phase
rapid cell division
constant growth rate
Phase 2- log or exponential phase
bacterial growth phase affected by beta lactam antibiotics
Phase 2- log or exponential phase
bacterial growth phase
exhaustion of nutrients or accumulation of toxic products
zero growth rate
spores are formed
phase 3 - stationary phase
most of the cells die because nutrients have been exhausted
negative growth phase
phase 4 - decline or death phase
bacterial oxygen metabolism generates toxic products such as
superoxide and hydrogen peroxide
what enzymes are needed for bacteria to survive in aerobic environments
superoxide dismutase
peroxidase
catalase
aerobic metabolism
types of bacteria
obligate aerobes
microaerophiles
anaerobic metabolism
types of bacteria
facultative anaerobe
aerotolerant anaerobes
obligate anaerobes
completely dependent on oxygen for ATP generation
obligate aerobes
use fermentation but can tolerate low amounts of oxygen because they have SOD
microaerophiles
utilize oxygen if it is present, but can use fermentation in its absence
facultative anaerobes
exclusively anaerobic but is insensitive to presence of oxygen
aerotolerant anaerobes
cannot grow in presence of oxygen because they lack SOD, peroxidase, catalase
obligate anaerobes
enumerate obligate anaerobes
actinomyces
bacteroides
clostridium
enumerate aerotolerant anaerobes
propionibacterium
lactobacillus
bacterial oxygen metabolism
nocardia
obligate aerobes
bacterial oxygen metabolism
streptococcus
microaerophiles
bacterial oxygen metabolism
staphylococcus
facultative anaerobic
bacterial oxygen metabolism
Neisseria
Obligate aerobes
bacterial oxygen metabolism
Bacillus cereus
obligate aerobes
bacterial oxygen metabolism
pseudomonas
Obligate aerobes
bacterial oxygen metabolism
Bordetella
Obligate aerobes
bacterial oxygen metabolism
spirochetes (Borrelia, Treponema)
microaerophiles
bacterial oxygen metabolism
Campylobacter
Microaerophiles
bacterial oxygen metabolism
Legionella
Obligate aerobes
bacterial oxygen metabolism
Brucella
Obligate aerobes
bacterial oxygen metabolism
Mycobacterium
obligate aerobes
bacterial oxygen metabolism
Leptospira
Obligate aerobes
bacterial oxygen metabolism
Mycoplasma pneumoniae
Obligate aerobes
bacterial oxygen metabolism
Helicobacter
microaerophiles
bacterial oxygen metabolism
Bacillus anthracis
facultative anaerobes
bacterial oxygen metabolism
Corynebacterium
Facultative anaerobes
bacterial oxygen metabolism
Listeria
Facultative anaerobes
bacterial oxygen metabolism
Mycoplasma in general
Facultative anaerobes
Obligate aerobes
enumerate
Nosy and Nagging Pests Must Breathe Lots of Oxygen
Nocardia Neisseria Pseudomonas Mycobacteria Bordetella/ Brucella/ B. cereus Legionella
Obligate anaerobes
enumerate
ABC
Actinomyces
Bacteroides
Clostridium
DNA transferred from one bacterium to another
Conjugation
DNA transferred by a virus from one cell to another
transfuction
Purified DNA taken up by cell
transformation
Bacterial DNA transfer procedure for prokaryotes
Conjugation
Transduction
Transformation
Eukaryotic cells DNA transfer procedure
transformation
microorganisms that are permanent residents of the body
normal flora
are low virulence organisms in their usual anatomic site
normal flora
occurs when normal flora occupy receptor sites preventing pathogens from binding
colonization resistance
normal flora
skin
Staphylococcus epidermidis
normal flora
nose
Staphylococcus aureus
normal flora
Mouth
Viridans Streptococci
normal flora
mouth
viridans streptococci
normal flora
Dental plaque
Streptococcus mutans
normal flora
Colon
Bacteroides
Escherichia coli
normal flora
Vagina
Lactobacillus vaginalis
E. coli
Streptococus agalactiae
are microbes that can cause disease
pathogens
are microbes that cause disease in immunocompromised people only
opportunistic pathogens
is a measure of a microbe’s ability to cause disease determined by virulence factors such as capsules, exotoxins, or endotoxins
virulence
is the number of organisms required to cause disease in 50% of population
ID50
2 meanings of infection
presence of microbes in the body
symptoms of disease
mechanisms of bacterial disease
production of toxins
induction of inflammation
mediates strong adherence to surface of human cells
glycocalyx
surface proteins called ___ mediate binding to endothelium and to extracellular proteins such as fibronectin
curli
enzymes in bacterial invasion
collagenase hyaluronidase coagulase IgA protease Leukocidin
enzyme to spread through subcutaneous tissue
collagenase
and hyaluronidase
bacterial enzyme to accelerate formation of a fibrin clot coating the organisms with a layer of fibrin
coagulase
bacterial enzyme that allows adherence to mucous membranes
IgA protease
bacterial enzyme that destroys both neutrophilic leukocytes and macrophages
leukocidin
which enzyme is primarily responsible for development of cellulitis from a small furuncle
hyaluronidase
Prophage coded bacteria
ABCDE
shigA- like toxin: EHEC
botulinum
Cholera Diphtheria
Erythrogenic Strain
Bacteria with IgA protease
SHiNe My Gong Streptococcus pneumoniae Haemophilus influenzae Neisseria meningitidis Neisseria Gonorrhoeae
the toxic component of LPS
lipid A
this virulence factor protect against phagocytosis
polysaccharide capsule
this process involves anticapsular antibodies more effective phagocytosis to occur
opsonization
cell wall protein S. pyogenes that protects against phagocytosis
M protein
cell wall protein of S. aureus prevents complement activation
protein A
exotoxin is produced by
gram + and gram - bacteri
endotoxin is found in
gram - bacteria
which toxin is secreted by bacteria
exotoxin
exotoxin is made up of
polypeptide
endotoxin is made up of
lipopolysaccharide
location of genes of exotoxin
plasmid or bacteriophage
location of genes
endotoxin
bacterial chromosome
which is more toxic
exotoxin vs endotoxin
exotoxin
which is more antigenic
exotoxin vs endotoxin
exotoxin
what vaccine is used for exotoxin
toxoids
heat stability of exotoxin
60 C - destroyed rapidly
what exotoxin is heat stable
staphylococcal enterotoxin
typical diseases of exotoxin
tetanus
botulism
heat stabilty of endotoxin
stable at 100 C for 1 hour
typical diseases of endotoxin
meningococcemia
is the toxic component of LPS
Lipid A
Lipid A induces cytokines such as
TNF and IL-1
Lipid A effect
overproduction of cytokines
activates complement cascade
activates the coagulation cascade resulting in DIC
all bactyeria have cell walls composed of peptidoglycan except
Mycoplasma pneumoniae
All gram-positive bacteria have no endotoxin except
listeria monocytogenes
all bacterial capsules are composed of polysaccharide except
bacillus anthracis
all exotoxins are heat-labile except
staphylococcal enterotoxin
use of high or rising titer of specific IgG antibodies or the presence of a specific IgM antibodies may suggest or confirm a diagnosis
serodiagnosis
Microorganisms particularly bacteria, are tested in vitro to determien whether they are susceptible to antimicrobial agents
Antimicrobial suspceptibility
propagation of microorganisms in media conducive to their growth
culture
a nutritive substance in which cultures of microorganisms are grown
culture medium
specialized media for
clostridium perfringens
egg yolk
specialized media for
corynebacterium diphtheriae
tellurite
specialized media for
group D streptococci
bile esculin
specialized media for
staphylococci
mannitol salts
specialized media for
N. meningitidis
chocolate
specialized media for
N. gonorrhoeae from sterile sites
chocolate
specialized media for
N. gonorrhoeae from nonsterile sites
Thayer-martin
specialized media for
Haemophilus influenzae
Chocolate + Factors X and V
Bacteria isolated in this agar:
Lowenstein -Jensen
Mycobacterium tuberculosis
Bacteria isolated in this agar:
Thiosulfate citrate bile salts
Vibrio cholerae
Bacteria isolated in this agar:
Border- Gengou
Bordetelli pertussis
Bacteria isolated in this agar:
Charcoal-yeast extract
Legionella pneumphila
Bacteria isolated in this agar:
skirrows
Campylobacter, helicobacter
Bacteria isolated in this agar:
Barbour-stoenner-kelly
Borrelia burgdorferi
Bacteria isolated in this agar:
eaton
Mycoplasma pneumoniae
Bacteria isolated in this agar:
cetrimide
Pseudomonas aeruginosa
Bacteria isolated in this agar:
Xylose-lysine-deoxycholate (XLD)
Salmonella, Shigella
Bacteria isolated in this agar:
Ellinghausen-McCullough-Johnson-Harris (EMJH)/ Fletcher’s
Leptospira interogans
Working Dx: TB Lymphadenitis -
what should be requested to RAPIDLY identify mycobacterial species
PCR
highly specific, quite sensitive, much faster than culture, especially useful for those bacteria that are difficult to culture such as chlamydia and mycobacterium species
Molecular Tests
enumerate Antigen detection immunodiagnostics
Immunofluorescent antibody tests
EIAs, ELISA, agglutination tests
enumerate antibody detection immunodiagnostics
Western blot immunoassays
Lepto MAT
COPT
Serologic tests is used for iagnosis of viral infections with long incubation period prior to appearance of clinical manifestations
such as
Epstein-Barr, Hepatitis, HIV