Topic 5- Glossary Flashcards

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1
Q

Biosphere

A

The part of the earth and its atmosphere which is inhabited by living organisms

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2
Q

Ecosystem

A

A relatively self-contained, interacting community of organisms

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3
Q

Abiotic

A

Physical and chemical aspects of an ecosystem

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4
Q

Biotic

A

Factors determined by organisms- predation and competition

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5
Q

Habitat

A

The place where the organisms live; the non-living part of an ecosystem;

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6
Q

Microhabitat

A

Area of distinct conditions within a habitat- e.g underside of a stone in a pond

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7
Q

Population

A

A group of individuals of the same species living in a particular habitat

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8
Q

Community

A

The living part of an ecosystem; all the plants and animals that live in a habitat i.e. all the populations

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9
Q

Species

A

A group of actually or potentially interbreeding natural populations that produce fertile offspring and that is reproductively isolated from other such groups.

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10
Q

Niche

A

The functional position of an organism in its environment, comprising its habitat and the resources it obtains there, and the periods of time it is active

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11
Q

Biodiversity

A

The variability among living organisms from all sources; it includes diversity within species, between species and within and between ecosystems

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12
Q

Competition

Intraspecific competition
Interspecific competition

A

Use of the same resource by two or more species, when the resource is present in insufficient supply for the combined needs of the species.
May be within members of same species ……………………………..
or between members of different species…………………………..

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13
Q

Edaphic factors

A

Factors connected with the soil structure, texture, pH, mineral content

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14
Q

Mutualism

A

Relationships in which both partners benefit

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15
Q

Biotic factors show effects related to the size of a population, and so are said to be __________ ________

A

Density-dependent

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16
Q

Topography

A

Physical factors of the environment including altitude, slope, aspect, and drainage.

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17
Q

Anthropogenic factors

A

Factors arising from human activity- biotic or abiotic

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18
Q

Zonation

A

A change in species composition through a habitat due to a change in environmental factor(s). The ecosystem will be divided into distinct zones, where each zone experiences similar abiotic/biotic conditions. This is particularly clear on a rocky shore. Here the fine balance between tolerance to desiccation and competitive ability is a major cause of the patterns seen.

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19
Q

Sites of Specific Scientific Interest SSIs

A

*Areas managed and protected to conserve specific rare or endangered species or habitats

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20
Q

Succession

A

The way in which the different species of organisms that make up a community change over a period of time. Can be seen clearly in sand dune systems.

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21
Q

Pioneer species

A

An organism that can survive extreme conditions (e.g. low nutrients, low water availability) or the first organism to colonise a newly formed habitat or a habitat that has been cleared of vegetation. Colonisation by these species will start to change the conditions of the habitat making it more suitable for other organisms to colonise.

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22
Q

Climax community

A

The stable community that make up the final stage of ecological succession. The nature of the climax community will depend on ecological conditions such as the climate.

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23
Q

Primary succession

A

Succession from an area which has not previously sustained a community, such as bare rock.

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24
Q

Secondary succession

A

Succession where an previous community has been cleared, e.g. land cleared for building or cleared by fire

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25
Q

Deflected succession

A

A stable pre-climax community which is maintained only by human activity, e.g. grazing results in this.

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26
Q

Phytoplankton

A

Algal plankton. Plankton refers to algae and animals kept in suspension by water turbulence. Phyto is a general botanical prefix.

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27
Q

Autotrophs

A

Organisms that can make their own organic compounds from inorganic compounds

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28
Q

Photosynthesis

A

The metabolic process by which light energy is trapped and used to fix carbon dioxide into compounds such as glucose.

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29
Q

Chemosynthetic autotrophs

A

Organisms that can produce organic compounds using energy released from chemical reactions.

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30
Q

OILRIG

A

Acronym to remember oxidation is loss of, reduction is gain, in electrons.

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31
Q

Photolysis

A

Splitting water into hydrogen ions, electrons and oxygen molecules, using light energy

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32
Q

Light dependent reaction

A

The process by which ATP and reduced NADP are generated in photosynthesis using energy from light and hydrogen from photolysis of water. The waste product of this reaction is oxygen.

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33
Q

Light independent reaction

A

The reactions where the products of the light dependent reaction are used to reduce carbon dioxide to form carbohydrate

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34
Q

Palisade mesophyll

A

The tall thin cells found near the upper surface of a leaf. They contain many chloroplasts and are an important site of photosynthesis.

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35
Q

Chloroplast

A

An organelle, bounded by a double membrane, containing a large surface area of membranes with pigments, enzymes and electron carriers required for photosynthesis

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36
Q

Thylakoid membrane

A

Interconnected, fluid-filled sacs within chloroplasts. Pigments and electron carriers are embedded in the membrane.

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37
Q

Stroma

A

Fluid surrounding the thylakoid membranes containing enzymes for the light independent reaction.

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38
Q

Granum (plural grana)

A

A stack of thylakoid membranes, joined together.

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39
Q

Inner chloroplast membrane

A

The second membrane of a chloroplast containing membrane-bound transport proteins. Regulates the passage of substances in and out of the chloroplast

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40
Q

Outer chloroplast membrane

A

Surrounds a chloroplast. Freely permeable to oxygen, water and carbon dioxide

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41
Q

Electron transport chain

A

A series of closely situated electron carrier molecules embedded in the thylakoid membrane

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42
Q

Photophosphorylation

A

The part of the light-dependent reaction of photosynthesis in which energy released in the electron transfer chain is used to produce ATP. The electrons being transferred were lost from the chlorophyll molecule, when chlorophyll absorbs light energy. Light is the initial energy source for ATP production.

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43
Q

Photosystem I and II

A

Photosynthetic pigments arranged in clusters in the thylakoid membrane, where several hundred pigment molecules surround a primary chlorophyll molecule. These acts as a sort of light funnel, absorbing light and passing the energy from molecule to molecule until it reaches the primary chlorophyll molecule at the reaction centre.

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44
Q

ATP

A

The most important energy transfer molecule within cells. Composed of adenine, joined to ribose that is also joined to three phosphate groups. When formed, useful energy is stored; when broken down (third phosphate group lost), energy is released to drive other energy requiring (endergonic) reactions.

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45
Q

Coenzyme

A

An organic substance which plays an essential part in an enzyme catalysed reaction, but which are only involved temporarily with the enzyme (cf. prosthetic group)

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46
Q

NADP

A

The coenzyme acting as a hydrogen carrier in photosynthesis.

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47
Q

Calvin cycle

A

The cyclic part of the light independent reaction of photosynthesis. It consists of a series of reactions in which carbon dioxide is reduced to glyceraldehyde 3-phosphate (GALP), while the carbon dioxide acceptor ribulose bisphosphate is regenerated. For every six molecules of carbon dioxide that enter the cycle, a net gain of two molecules of GALP result.

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48
Q

RuBISCO - ribulose bisphosphate carboxylase

A

The most common enzyme on the planet. It catalyses the fixation of carbon dioxide in the Calvin cycle

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49
Q

RuBP, Ribulose bisphosphate.

A

The five carbon compound which combines with carbon dioxide in the Calvin cycle.

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50
Q

Glycerate 3-phosphate (GP)

A

The first stable 3-carbon molecules produced in the light independent reaction

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51
Q

Glyceraldehyde 3-phosphate (GALP)

A

3-carbon molecules that combine to form glucose and other carbohydrates in the light independent reaction

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52
Q

Heterotrophs/ consumers

A

Organisms that take in large organic molecules produced by another species.

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53
Q

Trophic level

A

Level in a food chain occupied by a particular group of organisms

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54
Q

Omnivore

A

An organism that feeds on both plants and animals, therefore feeding at more than one trophic level in a food web.

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55
Q

Detritivores

A

Primary consumers that feed on dead organic matter e.g. wood lice, earthworms. They ingest the material and digest internally.

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56
Q

Decomposers

A

Species of bacteria and fungi that break down dead organisms and excreted materials. They secrete enzymes and digest externally, before absorbing the small soluble products of digestion.

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57
Q

Absorption spectra

A

The range of wavelengths of light absorbed by plant pigments

58
Q

Limiting factors

A

Factors that cause the rate of a reaction such as photosynthesis to plateau even when other factors are increased.

59
Q

Gross primary productivity GPP

A

The rate at which energy from sunlight is incorporated into organic molecules by an ecosystem. It is usually expressed as units of energy per unit area per year. GPP = NPP + respiration.

60
Q

Net primary productivity NPP

A

The rate at which energy is transferred into the biomass of plants. Equivalent to the GPP - the energy lost in respiration.

61
Q

Biomass

A

The mass of living material in an organism or at a trophic level

62
Q

Long data sets

A

Long sequences of data of for example, temperature, rainfall. Old data sets used different equipment and possibly different units of measurement so may also be unreliable

63
Q

Straight best fit line

A

A line which goes through or between the points so that the maximum number lie on the line with the others evenly dispersed either side of the line.

64
Q

Curved line or smoothed line

A

A line which goes up and down amongst the graph points, picking out overall trends

65
Q

Peat bogs

A

Waterlogged areas of poorly decayed organic material, conditions are anaerobic and acidic.

66
Q

Pollen grains

A

Microspores of seed plants- particularly well preserved in peat bogs, with a tough outer layer, and distinctive to each plant species that produces it.

67
Q

14C dating

A

A method of dating which relies on the decay rate of a carbon isotope

68
Q

Kite diagrams

A

A graphical representation of data showing species abundance across a landscape or timescale. The width of the graph shape represents the number of individuals or the % individuals. A single thin line represents species absence (the baseline).

69
Q

Alder trees

A

Species of tree which grows in damp soil, often near rivers, lakes and marshes.

70
Q

Bog beetles

A

*Insect exoskeletons found in peat bogs. Useful as insects reproduce quickly and any effect of climate change will be readily seen.

71
Q

Dendrochronology

A

Dating of past events (climatic changes) through the study of tree rings

72
Q

Skeleton plots

A

Graphical representation of tree ring width

73
Q

Xylem

A

The woody tissue that conducts water and minerals. Diameter varies according to season of growth- wide in the spring, narrow in the summer, little growth in the autumn and winter.

74
Q

Tree ring

A

The contrasting pattern of light and dark areas produced by the seasonal early and late growth of xylem tissue.

75
Q

Bristle cone pine

A

*Oldest living trees, approx 4700 years old

76
Q

Ice cores

A

Samples taken from glaciers, ratios of different oxygen isotopes or the CO2 concentrations reveal clues about the climate

77
Q

Industrial revolution

A

Period in history (from approx 1750) marked by the increase in modernisation and automation of many manufacturing processes, accompanied by an increase in fossil fuel consumption.

78
Q

Atmosphere

A

Thin layer of gases, extending 100 km above Earth’s surface, held in place by gravity.

79
Q

Greenhouse effect

A

A natural process where infrared radiation is trapped by the atmosphere. It is essential for life on earth, without it the temperature would fluctuate between very hot days and -40C at night.

80
Q

Global warming

A

Enhanced greenhouse effect, thought to be caused by an increase in greenhouse gases due to human effects, is leading to this…………………………

81
Q

Solar radiation

A

Radiation from the sun

82
Q

Infra-red

A

Radiation emitted by the earth after absorbing solar radiation.

83
Q

Greenhouse gases

A

Gases in the atmosphere which absorb infra-red radiation therefore warming the troposphere.

84
Q

Global warming potential

A

Measure of the greenhouse effect caused by a gas relative to the same amount of carbon dioxide over a given time.

85
Q

CO2

A

Greenhouse gas that has the largest effect because of its abundance although it does not have the highest global warming potential (value of 1). Has increased by 42% (as of 2014) since the industrial revolution (1750).

86
Q

(CFCs) chlorofluorocarbons

A

Chemicals used in, for example, aerosol propellants and refrigerators.

87
Q

Dinitrogen oxide or nitrous oxide

A

Gas released by bacteria during the breakdown of nitrogen compounds in the soil and oceans, and from burning of fossil fuels

88
Q

Methane

A

Gas produced by
i) Anaerobic decay of organic material in waterlogged conditions, e.g. bogs and rice fields.
ii) Also produced and emitted from digestive system of cows.
iii) Decay of domestic waste in landfill sites and decomposition of animal waste.
Incomplete combustion of fossil fuels

89
Q

Fossil fuels

A

Compounds which are formed over a long period of time from once living organisms, which can be burned to release energy.

90
Q

Correlation

A

The relationship between two variables such that a change in one of the variables is reflected by a change in another variable. When two events occur at a similar time they may be linked.

91
Q

Causal relationship

A

When a change in one variable is responsible for a change in another variable. It implies a mechanism that can be investigated.

92
Q

Theory

A

A well-tested and widely accepted idea or principle supported by a great deal of evidence.

93
Q

Hypothesis

A

A proposed explanation for an observation or phenomenon that can be tested.
It should not be confused with the above, as it is used in the initial stages of research, and will have limited evidence to support it.

94
Q

Controversy

A

When alternative viewpoints can be validly held.

95
Q

Kyoto protocol

A

*International agreement to cut back on greenhouse gas emissions formed in 1997.

96
Q

Extrapolation

A

Extending a data set forwards based on existing trends

97
Q

International Panel on Climate Change (IPCC)

A

*The group which is cited for much of the work on climate change in his topic.

98
Q

Community

A

Group of species found in the same place at the same time

99
Q

Distribution

A

If species migrate or change in location we say the ________ of the species has changed.

100
Q

Dominant

A

Climate change may cause the balance between species to shift, if conditions favour one species they may become ____________

101
Q

Heath bedstraw

A

Distribution of this plant is predicted to be more to the north in the future

102
Q

Parasite

A

An organism that relies on another host organism for its survival at the expense of the latter.

103
Q

Witchweed

A

A parasitic weed that infects grain crops causing damage and reduced crop yields; requires air temperature of 28C

104
Q

Some of the non-migratory European Butterflies.

A

Insects whose distribution has already changed, showing a shift northwards

105
Q

Alien species

A

Invading species to an area

106
Q

Enzymes

A

Proteins which act as biological catalysts, which work best at optimal temperature and pH conditions

107
Q

Limiting factor

A

A factor whose supply/concentration most strongly influences the rate of a reaction for example photosynthesis.

108
Q

Isoenzyme

A

*Different forms of the same enzyme

109
Q

Optical temperature

A

The temperature at which the rate of reactions is highest

110
Q

Denatured

A

If the three dimensional shape of an enzyme is disrupted (due to changes in temp, or pH etc) and the substrate no longer fits into the active site, the enzyme is said to be ________

111
Q

Q10 or temperature coefficient

A

A ratio that allows use to us to mathematically describe what happens to the rate of reaction as temperature increases by 10C.
= Rate of reaction at temperature T + 10C
Rate of reaction at temperature T
Above the optimal temperature this relationship no longer applies.

112
Q

Coral Bleaching

A

*Death of the alga which lives symbiotically with coral, therefore causing a loss of colour (due to the algae) of the reef.

113
Q

Environmental cue

A

An environmental trigger for development or behaviour.

114
Q

Temperature dependent sex determination

A

Temperature affects the sex of the young

E.g. leatherback turtles- higher nest temperatures produce females.

115
Q

Phenology

A

Study of seasonal events in the lives of animals and plants e.g. timing of flowering, leaf emergence, summer bird arrival etc. Useful biological indicators of climate change.

116
Q

Photoperiod

A

The duration of a period of light- i.e. day length.

117
Q

Mismatch

A

Organisms have evolved so that life cycles are synchronised with periods of maximum food availability. If that synchronisation was achieved through temperature in one organism and photoperiod in another then a ____________ will occur.

118
Q

Natural selection

A

Term given to the mechanism by which better adapted organisms live to produce more viable offspring and so pass on their genes. This has the effect of increasing their proportion in the population so that they become more common.

119
Q

Allele frequency

A

This term is defined as the relative frequency of a particular allele in a population
Evolution is a change in ________ _________ in a population of organisms over time.

120
Q

Peer review

A

The process by which scientific experts anonymously check a scientists work to see that it is valid, before it is published

121
Q

Genomics

A

The study of DNA of a species

122
Q

Proteomics

A

The study of the proteins.

123
Q

DNA hybridisation

A

A method to measure how similar the DNA from two species is. Based on the temperature it takes for the hybrid DNA to denature.

124
Q

DNA profiling

A

A method to see similar the DNA from two species is, which relies on the differences fragments of target DNA. It may use STRs in some organism (see topic 6). It can also use differences in restriction enzyme recognition sites, and whether the DNA can be cut or not due to mutations.

125
Q

DNA and protein sequencing

A

The detailed comparison of DNA or proteins by looking at the order of bases in the DNA or amino acids in the proteins.

126
Q

Molecular clocks

A

DNA accumulates mutations over time, and the mutations rate can be estimated. Evolutionary relationships and the timings can be measured by measuring the number of mutations. Typically uses mitochondrial DNA which shows maternal inheritance.

127
Q

Speciation

A

The creation of a new species from an ancestral population. This requires that the two gene pools became separated in some way. As time progresses and the isolated populations are exposed to different selection pressures, accumulate different mutations, and the two groups become genetically different.

128
Q

Reproductive isolation

A

A key step in speciation is that two populations are unable to breed and produce fertile offspring. There is no gene flow between the populations.

129
Q

Allopatric speciation

A

This type of speciation occurs where populations are geographically isolated from one another, preventing the groups from mating with each other, and so the population becomes more reproductively isolated.

130
Q

Sympatric speciation

A

This type of speciation occurs where two populations become reproductively isolated in the same environment without any geographical barrier, due to other isolating mechanisms. E.g. behaviourally, physically, temporally (reproduce at different times) or as a result of hybrid in viability (hybrids die before they can reproduce) or hybrid sterility.

131
Q

Carbon cycle

A

Worldwide circulation of carbon between the atmosphere, and living organisms (but also takes account of fossil fuels).

132
Q

Positive feedback

A

When something ‘feeds back’ to increase the action/result: e.g. increase in water vapour as a result of increased temperatures serves to act as a greenhouse gas which further increases temperatures

133
Q

Compounds such as coal ‘lock in’ carbon and act as _______ ________

A

Carbon sinks

134
Q

Deforestation

A

Cutting down of trees on a large scale

135
Q

Ecotrons

A

Artificial chambers containing control plots of land; used to study movement of carbon through an ecosystem

136
Q

Biofuels

A

Solid biomass which can be used as fuels, e. wood, straw, ethanol

137
Q

Methane produced from domestic waste and animal slurry is also called ________

A

Biogas

138
Q

Sustainable resources

A

Resources that are renewable, e.g. plant material that can be regrown.

139
Q

Carbon dioxide neutral

A

Where the release of CO2 upon combustion is counterbalanced by the amount of CO2 that was absorbed by photosynthesis. Thus there is no net increase in CO2 into the atmosphere.

140
Q

Reforestation

A

Replanting of trees and management of new forests by e.g. coppicing.