Topic 4: Evolution + Classification ❀ Flashcards

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1
Q

Why are organisms put into classifications?

A

-To identify species
-Predict characteristics
-Find evolutionary links

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2
Q

Three domains for classification (start of classifications)

A

Domains:
-Archae
-Bacteria
-Eukarya

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3
Q

Process of classification

A

Process of classification:
-As you move down the hierarchy there are more groups at each level and fewer organisms in each groups
-Organisms within a group become more similar and share more characteristics

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4
Q

Taxonomic groups (KPCOFGS)

A

Kingdom
Phylum
Class
Order
Family
Genus
Species

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5
Q

What was the original way organisms were named?

A

Organisms were originally named based on how they look or their behaviour, but this was not ideal for international scientists so it has since changed

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6
Q

How are organisms named now? (Bionomial nomenclature)

A

Organism names:
1st part - genus (1st letter capitalised)
2nd part - species (1st letter lower cap)

+always written in italics on computer or underlined if handwritten

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7
Q

Intraspecific variation

A

Intraspecific variation is variation among individuals of the same species

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8
Q

The 5 kingdoms

A

The 5 kingdoms:
-Prokaryotae (bacteria)
-Protoctista (unicellular eukayotes)
-Fungi (yeasts/moulds/mushrooms etc)
-Plantae (plants)
-Animalia (the animals)

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9
Q

Why were organisms originally classified into kingdoms?

A

Organisms were originally classified into kingdoms based on similarities in their observable features

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10
Q

General features of prokaryotae

A

General features of prokayotae:
-Unicellular
-No nucleus or other membrane-bound organelles
-No visible feeding mechanism - nutrirents absorbed through cell wall or produced internally by photosynthesis

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11
Q

General features of protoctista

A

General features of protoctista:
-(Mainly) unicellular
-Nucleus and other membrane-bound organelles
-Some have chloroplasts
-Some are ssesile, but others move by cillia, flagella or by amoeboid mechanisms
-Nutrients acquired by photosythesis (autotrophic feeders), ingestion of other organisms (heterophic feeders) or both - some are parasitic

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12
Q

Autorophic feeders

A

Autorophic feeders make their own food - eg acquire nutrients by photosynthesis

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13
Q

Heterophic feeders

A

Heterophic feeders are where nutrients are acquired by ingestion - eg ingest other organisms

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14
Q

Parasitic

A

Parasitic - acquire nutrients both by photosynthesis and ingesting other organisms (autotrophic + heterophic)

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15
Q

Fungi general features

A

Funi general features:
-Unicellular or multicellular
-A nucleus an dother membrane-bound organelles and a cell wall mainly ocmposed of chitin
-no chloroplasts or chlorophyll
-No mechanisms for locomotion
-Most have a body or mycelium made of threads or hyphae
-Nutrients are acquired by absorption - mainly from decaying materials (sprophytic feeders), but some are parasitic
-most store their food as glycogen

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16
Q

Saprophytic feeders

A

Saprophytic feeders absorb nutrients from decaying material (eg fungi)

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17
Q

General plantae features

A

General plantae features:
-Multicellular
-A nucleus and other membrane-bound organelles including chloroplasts, and a cell wall mainly composed of cellulose
-All contain chlorophyll
-Most don’t move, though gametes of some plants move using cilia or flagella
-Autotrophic feeders
-Store food as starch

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18
Q

General animalia features

A

General animalia features:
-Multicellular
-Nucleus and other membrane-bound organelles (no cell walls)
-No chloroplasts
-Move with the aid of cilia, flagella, or contractile proteins sometimes in the form of muscular organs
-Heterotrophic feeders
-Food stored as glycogen

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19
Q

How are organisms classified now?

A

Organisms are classified by evolutionary links between organisms. This is done by comparing similiraties in DNA and proteins of different species

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20
Q

Current classification system

A

Current classification system is the ‘Three DOmain System’ - proposed by Carl Woese in 1977

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21
Q

How does the Three Domain System group organisms?

A

The three domain systems groups organisms using diferences in the sequences of nucleotides in the cells rRNA as well as the cells membrane lipid structure and their sensitivity to antiobiotics

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22
Q

The three domains

A

The three domains are Archae, Bacteria, Eukarya

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23
Q

RNA and ribosomes of eukarya

A

Eukarya - 80s ribosomes, RNA polymerase contains 12 proteins

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24
Q

RNA and ribosomes of archae

A

Archae: 70s ribosomes, RNA polymerase of different organisms contains between 8 and 10 proteins and is very similar to eukaryotic ribosome

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25
Q

RNA and ribosomes of Bacteria

A

Bacteria - 70s ribosomes, RNA polymerase contains 5 proteins

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26
Q

6 kingdoms of the current ‘Three Domain System’ model (Woese’s system)

A

6 kingdoms: archaebacteria, eubacteria, protocista, fungi, plantae, animalia

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27
Q

Why is eubacteria classified into their own kingdom different from archaebacteria despite both being single-cells prokaryotes?

A

Eubaceria has a different chemical makeup from archaebacteria. They contain peptidoglycan (a polymer of sugars and amino acids) in their cell wall wheras Achaebacteria do not

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28
Q

Archaebacteria

A

Archaebacteria live in extreme environments eg hot thermal vents, anaerobic conditions (eg methanogens) and highly acidic environments

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29
Q

Eubacteria

A

Eubacteria (also known as true bacteria) are found in all environments

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30
Q

Phylogeny

A

Phylogeny = name given to the evolutionary relationships between organisms

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31
Q

Phylogenetics

A

-Phylogenetics is the study of the evolutionary history of groups of organisms
-Reveals which group a particular organism is related to and how closely related these organisms are

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32
Q

Phylogenetic trees

A

Phylogenetic trees - diagrams used to represent the evolutionary relationships between organisms
-Branched diagrams shows that different species have evolved from a common ancestor
-Earliest organisms found at base

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33
Q

How are phylogenetic trees produced

A

Phylogenetic trees are produced by looking at similarities and difference sin species physical characterics and genetic makeup

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34
Q

Advantages of phylogeny

A

Advantages pf phylogeny
-Can be done without reference to the linnaean classification system
-Produces continuous trees wheras classification requires descrete taxonomical groups
-Hierarchal nature of linnaean classification can be misleading

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35
Q

Evolution definition

A

Evolutoin - the theory that describes the way in which organisms evolve, or change, over many years as a result of natural selection

36
Q

Evidence for evolution

A

Evidence for evolution:
-Uniformitarianism
-Palaeontology
-Comparative anatomy
-Comparative biochemistry

37
Q

Uniformitarianism

A

Uniformitarianism: evolution is a slow process where changes gradually accumulate over long periods of time

38
Q

Palaeontology

A

Palaentology: study of fossils and fossil record - simple organisms found in oldest rocks, more complex found in more recent rocks
- sequence of fossils matches ecological links (plants before animals)
- similarities between anatomy of fossils alows scientists to see how closely related organisms are and how they have evolved from a common ancestor

39
Q

Comparative anatomy

A

Comparative anatomy: study of the similarities and difference between organisms anatomy

40
Q

Comparative anatomy - homologous structure

A

A homologous structure is a structure that appears superficially different in different organisms but has the same udnerlying structure

41
Q

What does the presence of homologous structures provide evidence for?

A

The presence of homologous structures provide evidence for divergent evolution

42
Q

Divergent evolution definition

A

Divergent evolution: describes how, from a common ancestor, different species have evolved, each with a different set of adaptive features

43
Q

Comparative biochemistry

A

Comparative biochemistry:
-Similarities and differences between the chemical make-up of organisms
-Most molecules are highly conserved among species - eg cytochrome c in respiration
-Slight changes that occur can help identify evolutionary links

44
Q

Two most common molecules studied in comparative biochemistry

A

Most common molecules studied in comparative biochemistry: cytochrome c (protein involved in respiration) and ribosomal RNA

45
Q

Neutral changes

A

Neutral changes do not affect a molecule’s function

46
Q

How do you discover how closely related 2 species are?

A

Discover how closely related 2 species are by comparing the molecular sequence of a particular molecule

47
Q

How is the number of differences between species plotted in comparative biochemistry?

A

The number of differences between species is plotted against the rate the molecule undergoes neutral base pair substitutions
-Scientists can use this to pin point when two species last shared a common ancestor

48
Q

3 Scientists involved in the development of the theory of evolution

A

3 scientists:
-Darwin = proposed the idea of natural selection
-Lyell = suggested fossils was best evidence of past organisms
-Hutton = proposed theory of uniformitarianism

49
Q

Interspecific variation

A

Interspecific variation: variation between members of different species

50
Q

Causes of variation

A

Causes of variation:
-Genetic variation
-Environmental variation

51
Q

Causes of genetic variation

A

Causes of genetic variation:
-Alleles (different characteristics)
-Mutations (changes in DNA sequence)
-Meiosis (independant assortment)
-Sexual reproduction (offspring from parents inherits genes from both parents)
-Chance

52
Q

Discontinuous variation

A

Discontinuous variation: qualitative differences in the phenotypes of individuals within a population (distinctive categories) - determined purely by genetic factors (a single gene - polymorphic gene-)
eg blood type

53
Q

Continuous variation

A

Continuous variation: quantitative differences in the phenotypes of inidividuals within a population for particular characteristics (no distinct characteristics - measured within a range between two extremes) -environmental + genetic factors (more than one gene )
eg height and mass

54
Q

Characteristics of normal distribution

A

Characteristics of normal distribution:
-Mean, median and mode are the same
-Bell shape which is symmetrical to mean
-50% values less than mean, 50% greater than mean
-Most values lie close to mean value - number at extremes are low

55
Q

Standard deviation

A

Standard deviation is a measure of how spread out the data is (high standard deviation = large amount of variation)

56
Q

Spearmans rank

A

Spearmans rank shows correlation coefficient
Positive correlation = as one increases, the other increases
Negative correlation = as one increases, the other decreases
No correlation = no relationship between data

57
Q

Adaptations categories

A

Categories of adaptation:
-Anatomical adaptation (physical features)
-Behavioural adaptation
-Physiological adaptation (processes that take place within the organism)

58
Q

Anatomical adaptation examples

A

Body covering, camouflage, teeth, mimicricy

59
Q

Xerophytes

A

Xerophytes are plants that are adapted to live in an environment with little water by reducing transpiration rate

60
Q

Marram grass (xerophyte) adaptations to reduce transpiration

A

Transpiration loss adaptations:
-Curled/rolled leave to minimise sa of moist tissue exposed to air
-Hairs on inside surface to trap moist air
-Stomata sunk into pits so less likely to open
-Thick waxy cuticle to reduce evaporation

61
Q

Examples of behavioural adaptation

A

Behavioural adaptations:
-Surivival behaviours (eg playing dead)
-Courtship (attracting mates)
-Seasonal behaviours (migration, hibernation)

62
Q

2 main categories of behavioural adaptations

A

2 main categories of behavioural adaptations:
-Innate (instinctive) behaviour: inherited through genes - surviving their habitat
-Learned behaviour - from experience

63
Q

Physiological adaptation examples

A

Physiological adaptation examples:
-Poison production
-Antibiotic production
-Water holding

64
Q

Analogous structures

A

Analogous structures - structures that carry out the same function but have a different genetic origin (eg tail fins of a whale and of a fish)

65
Q

Convergent evolution

A

Convergent evolution = when unrelated species begin to share similar traites due to adaptations to a similar environment

66
Q

How to read standard deviation on bar charts

A

-2 standard deviations plotted, if bars overlap it is likely due to chance, if they don’t overlap it is unlikely that it is due to chance

67
Q

How do we know wether to accept or reject the null hypotheses? (spearmans rank)

A

If the spearman’s rank correlation coefficient is smaller than the critical value = accept the null hypothesis
If it is bigger than the critical value, = reject the null hypothesis

68
Q

Selection pressure

A

Selection pressures are factors that affect the organism’s chances of survival or reproductive sucess

69
Q

Steps of natural selection

A

Steps of natural selection:
-Genetic variation in species
-Organisms adapt their characteristics to selected pressures ie predation are more likely to survive
-Those organisms pass allele which encodes the advantageous characteristic onto offspring
-Repeated for every generation
-Can lead to evolution of new species overtime

70
Q

Cacti adaptations

A

Cacti adaptations:
-Replaces leaves with spines to reduce surface area to volume ratio to reduce water loss
-Spines trap moist air near cacti to reduce transpiration + provide shade (less heat > less evaporation)
-Thick waxy cuticle reduces evaporation
-Stomata stunk into pits - traps moist air around stomata + stomata opens at night to allow co2 in for photosynthesis in daytime
-stores water in stem (succulent)

71
Q

Marram grass adaptations

A

Marram grass adaptations:
-Leaves rolled into tubes with stomata inside - moist air trapped within
-Stomata in sunken pits to trap air and fine hairs project inwards > reduces concentration gradient for water vapour > reduces diffusion out stomata
-Thick waxy cuticle
-Long roots

72
Q

Why can organisms still be considered the same spiecies even when isolated?

A

-Fertile offspring
-Genetic similarities
-Not enough phenotype differences (still similar in appearance)

73
Q

Why might the measurement of biodiversity in an area be inaccurate/lower than real amount?

A

-Inaccurate sampling of the area
-Camouflaged organisms
-Not all of the area explored

74
Q

Classifying organisms into the same species

A

Same species if:
-Can produce fertile offspring together
-Similar physical structures
-Similar genetics
-Same functioning in the wild

75
Q

Why do scientists classify organisms?

A

Scientists classify organisms to:
-Identify species
-Predict characteristics
-Find evolutionary links

76
Q

Defining species

A

Species is defined as a group of organisms that are able to reproduce fertile offspring

77
Q

What are the new classification systems based on now that technology has advanced?

A

Classification systems now are based on the DNA sequences and proteins of organisms. Closely-related organisms have DNA with a more similar base sequence and proteins with a similar amino acid sequence

78
Q

Modern techniques used to establish evolutionary relationships between species

A

Modern techniques used to establish evolutionary relationships between species:
-Genome sequencing
-Antibody-Antigen interactions
-Amino acid sequencing

79
Q

How is genome sequencing used to establish evolutionary relationships between species?

A

Genome sequencing:
-Base sequences of organisms sequenced and compared to other organisms
-More similar the base sequence = more closely related

80
Q

How is antibody-antigen interactions used to establish evolutionary relationships between species?

A

Antibody-antigen sequencing:
-Species produce specific antibodies that recognise foreign proteins - antibodies can be isolated and mixed with other organism’s proteins to see how many antigen-antibody complexes form
-More complexes = more closely related

81
Q

How is amino acid sequencing used to establish evolutionary relationships between species?

A

Amino acid sequencing:
-Amino acids can be sequenced and compared to other organisms
-More similar the amino acid sequence = more closely related
-Eg cytochrome C (used in respiration) can be used to compare organisms

82
Q

DNA that can be used to compare evolutionary relationships between organisms

A

We can used mitochondrial DNA, chloroplast DNA as well as chromosomal DNA to compare organisms

83
Q

Convergent evolution

A

Convergent evolution - organisms showing similarities in anatomy despite not being closely related - features evolve independently in places where selection pressures are similar

84
Q

Implications of evolution on humans

A

Implications of evolution:
Bacteria/Microorganisms are becoming resistant to antibiotics > increased risk of disease spread
+ Pests are becoming resistant to pesticides - reduces farmer yields - effects future food security + finances

85
Q

Development of antibiotic resistance

A

Development of antibiotic resistance:
1) Bacteria within the population randomly mutate to become resistant > humans take antibiotics
2) Non-resistant bacteria die, whilst those resistant survive
3) Resistant bacteria reproduce rapidly as competition is killed
4) Lots of genetically-identical copies of resistant bacteria produced

86
Q

What year did Charles Darwin and Alfred Wallace publish ‘On the origin of species’ together?

A

On the origin of species was published in 1858

87
Q

How do you find out if your result is statistically significant or not?

A

-Look up your result in the Student’s t test significance tables.

-First, calculate a quantity know as the ‘degrees of freedom’ (df) using the formula: (n₁ + n₂) - 2

-Then look at the corresponding probability values. For the data to be considered significantly different from chance alone, the probability must be less than 0.05.