Semester Exam (1) Flashcards
Phenotype
the physical characteristics of a species
Genotype
combination of alleles that an individual inherits for a given gene
Gene Pool
all of the genes of all the members of a population
Allele
different versions of a gene
Phenotype frequency
number of times a phenotype occurs within a population
Genotype frequency
number of times a genotype occurs within a population
Allele frequency
number of times an allele occurs within a population
4 main sources of genetic variation
mutation, lateral gene transfer, migration, sexual reproduction
lateral gene transfer
within a generation
migration
moving from one area to another
sexual reproduction
gamete formation through miosis
concept of hardy-weinberg
For a population to maintain equilibrium, certain conditions must be met, and that will stop evolution. The population has gene/allele frequencies that do not change. The population cannot evolve and there is no change happening. Although, this is impossible. We have proved gene frequencies must change from generation to generation.
5 criteria to meet hardy-weinberg
no new mutations, completely random mating, no migration, very large population, no natural selection
concept of genetic equillibrium
gene frequencies do not change, and evolution does not occur
hardy-weinberg equations
p+q=1, used for dominant and recessive allele frequencies, p^2+2pq+q^2, used for total dominant, recessive, heterozygous
genetic drift
change in gene frequency due to a random event, like natural disasters, smaller gene pools are more affected, then they are more likely to go extinct because genetic drift leads to less variation and they are less likely to adapt to environmental changes. Two types of genetic drift, bottleneck, and founder.
why is genetic drift more susceptible to small populations
smaller frequencies take less to be able to change the frequencies
why does genetic drift lead to extinction
genetic drift leads to less variation, and they are not as likely to adapt to environmental changes.
bottleneck effect
very large population is reduced to a small population by a natural disaster, loss of alleles leads to reduced gene pool
founder effect
a few individuals from the original large population break away to form a new population, gene pool of following generations is based on the founding population
gene flow
Movement of genes from one population to another population. 2 types immigration and emigration. Gene pools become more and more similar and could become one population.
immigration
movement into a population
emigration
movement out of a population
heterozygous advantage (sickle cell)
Mutation, blood cell clumps, collapses and no oxygen is available. aa is fatal, AA is malaria and slow intermediate HIV, and Aa is neither.
stabilizing selection
the sweet spot is right in the middle, those who have the “middle” trait are more likely to survive
disruptive selection
the sweet spot is the extreme lef of right. Those who have the “left or right” trait are more likely to survive.
directional selection
the sweet spot is either one side or the other. Those who have either the “left or the right” are more likely to survive.
definition of a species
groups of actually or potentially interbreeding natural population which produce fertile offspring
flaws to the definition of a species
those who produce asexually do not interbreed, so they do not fit the definition
speciation
how new species form
process of allopatric
speciation due to a geographic barrier
temporal isolation
reproduction at different times, so then they can not interbreed
behavioral isolation
different behaviors and ritual like courtship rituals such as their mating songs
speciation and the galapagos finches
geographic isolation, founder effect
convergent evolution
similar environmental pressures, two species become more closely similar, but never one species
divergent evolution
different environmental pressures, one species breaks off into two different species
adaptive radiation
different environmental pressures, one species breaks off into multiple different species
coevolution
change in response to each other, birds and flowers, bacteria and antibiotics
modern synthesis
incorporates genetics and population biology into natural selection, thomas hunt morgan, theodosius dobzhansky worked together, mutations creat variation, most have no effect
way in which modern synthesis is different from darwin
recognizes importance of mutations to variation, incorporates other methods of evolution, speciation occurs due to an accumulation of mutations and genetic change
3 key elements that must occur for a new species to form
seperated geographically, reproductive isolation, populations get new niches
definition of evolution
change in gene frequencies in a population from generation to generation
mechanisms of evolution
natural selection, gene flow, genetic drift
what does natural selection act on
phenotype which is coded by genotypes
what does a greater genetic variation in a population mean
wide range of phenotypes
do individuals evolve
no, populations do
what did the hardy-weinburg equilibrium prove
populations evolve because all five conditions cannot happen simultaneously. That proves that gene frequencies change from generation to generation
how to solve hardy-weinburg problems
solve for homozygous recessive first
can a population get rid of the recessive allele in the gene pool
it is very unlikely because even if the population of them get very low, there will still be Rr
hardy weinberg equilibrium must occur in populations where
an allele remains fixed, natural selection is not operating
parts of an HIV cell and what they do
attacks white blood cells, weakens a person’s immune system and makes them more susceptible to infections. HIV stands for Human Immunodefiency Virus CCR5 coreceptor, CXCR4 coreceptor, CD4 receptor
Taxonomy
branch of biology that names and groups organisms, the current term is systematics/cladistics
Morphology
physical characteristics
phylogeny
evolutionary history
history of taxonomy
In the 16th and 17th centuries, many new organisms were discovered. This led to many problems. Common names were used. Those common names changed from location to location, they did not accurately describe the organism, and different species shared the same common names. They began assigning Latin and Greek names.
work of Aristotle
Classified living organisms as either plant or animal (blood or no blood). Grouped those based on land, air, or water dwellers.
why Aristotle’s system became inaccurate
some organisms lived/used multiple of the land, water, and air options, like frogs
work of Carolus Linnaeus
In the 1730s Carolus Linnaeus created a universal system of naming that is still used today. It grouped organisms into hierarchical categories. It went from broad to specific. The system was based on morphology.
work of Carl Woese
Carl Woese used DNA sequencing when he found that there were two very distinct groups of bacteria. So, he proposed that a new domain should be added, Archaea.
when and why did the 5 kingdom system come about
In the 1950s and 60s, they realized the system was failing and in the 1970s the new system was widely accepted. It was changed because most biologists came to the realization that this system failed to accommodate the fungi, protists, and bacteria
What are the 5 kingdoms
Animalia, Plantae, Bacteria, Fungi,, Protista
Linnaeus’ hierarchy system
7 taxa; kingdom, phylum, class, order, family, genus, species; two kingdom; plantae, animalia, broad to specific, morphology
binomial nomenclature
Two part name for each species, universally used, genus name comes first, then species. Genus capitalized, species lowercase. Written underlines, typed italicized
when and why did the domain system come about
In the late 1970s because there were two distinct groups among the prokaryotes, according to genetic makeup. One of the groups produced methane.
phylogenetic tree
shows evolutionary relationships amongst a group of organisms, represents a hypothesis, shows speciation,
evidence used to construct a phylogenetic tree
the fossil record, morphology: comparison of homologous structure, the greater number of similarities close related. embryological development, and shared features.
difference between taxonomy and systematics
taxonomy uses morphology, has a two-kingdom system, and has no domain. Systematics uses phylogeny, a 5-kingdom system, and has domain.
cladistics
based on two principles, clade and derived characters
clade
a group that indicates the common ancestor and all of its descendants, living or non-living
derived characters
a trait that arises within a group of organisms and remains in all descendants, can be lost
node
spot where species break off
Archaea
a domain of archaea that can live in extreme environments, similar to bacteria in some ways
habitats of archaea
extreme environments like hot springs, glaciers, bottom of the sea, acidic water
how were archaea discovered
through Carl Woese’s research
why was rna used by woese
ribosomal rna contains most of the chemical composition and doesn’t change much over time
tree of life general shape
bacteria on one branch, archaea branching off with eukarya on the other side
protist habitats
most habitats are aquatic, freshwater and salt water
heterotrophic and autotrophic
heterotropic is obtaining food for metabolism, autotrophic is producing own energy through photosynthesis (chloroplasts)
protist reproduction
a-sexual, binary fission grows and splits. Sexual, alternation of generations (water molds) alternate between sexual and asexual. Conjugation, (not reproduction) exchange in genetic information to increase genetic variation
contractile vacuoules
Contractile vacuoles is a space within an organism that contracts to release fluid from the organism. Usually water is released. This helps with water balance inside of the cell. This allows the organism to survive under hypotonic stress. Hypotonic stress occurs in a hypotonic environment which is where the solute concentration outside the cell is less than inside the cell.
ameoba pseudopod
Psuedopods are used for locomotion and digestion. Cytoplasmic flow creates psuedopods, the psuedopod becomes ectoplasm, an exterior gel, and the endoplasm, or interior fluid is pulled toward the psuedopod. Psuedopod means false foot.
phagocytosis
Phagocytosis happens during movement when the amoeba comes in contact with food. The psuedopods move around the food to surround and trap it. An opening in the cell membrane allows the food into the cell and it can be digested.
cilia
A paramecium moves by the cilia located on the cell membrane. Cilia are microscopic, chort hair-like structures. There are lots of them found on the paramecium. These cilia move in unison to help propel the organism through the fluid. A common analogy is oars on a boat.
volvox colonial organism
The volvox is a parent colony housing daughter colonies. There can be 500-60000 cells within each colony inside of the volvox. The volvox is a green algae and each cell within the volvox contains two flagella. It is considered a colonial organism because of the daughter colonies within it.
volvox locomotion
volvox move by the two flagella located on every somatic cell within the organism. All the flagella move together to move the volvox toward the light.
euglena photosynthetic
Euglena can perform photosynthesis because they have chloroplasts in the cell. This means they are autotrophs because they can use photosynthesis and energy from light as a food source. When euglena does not have access to sunlight they are heterotrophs.
how do euglena move
flagella
Trypanosoma host
humans
Trypanosoma vectors
tsetse fly and “kissing bug”
Trypanosoma diseases it causes
African sleeping disease and Chagas disease