SAALIHA VIVA - INTRO Flashcards
Define crystal structure and unit cell
- A crystal structure is defined as the repeating arrangement of atoms throughout a crystal.
- The unit cell is the smallest group of atoms that enables identical cells to be stacked on top of each other to completely fill a space
- An entire crystal structure can be created by the repetition of cells in three dimensions
Define Laue spots
- The Laue method is used extensively for the determination of the orientation of single crystals
- Laue spots are bright spots formed when X-rays are diffracted by a crystal lattice
Amorphous vs crystalline structure
Define H bonds
Electrostatic interaction that occurs between molecules containing hydrogen and another electronegative atom such as O, N or a halogen
Importance of H bonding
- Unique properties of H2O - high boiling point and surface temperature
- Protein binding and DNA structure
- Designing new material
- Identifying polymorphs
Ritanovir
HIV treatment Ritonavir. Ritonavir is a polymorphic drug
- LHP method was used to identify the probability of H-bond formation to assess crystal stability based on H-bonding
- This can differentiate between a drug being effective or ineffective in industry
- H-bond geometry from the CSD
Explain salt-cocrystal continuum
- Concept which describes the relationship between salts and cocrystals
- The continuum refers to the fact that there is a range of possible combinations (between API and a coformer) of drug molecules that can form either a salt or a co-crystal.
- The location of the H ion is what differentiates the two
Coformers
Conformational isomers
- stereoisomers produced by rotation about a single bond
What is the difference between a salt and a cocrystal?
Rationale for salt co-crystal continuum
- Co-crystallisation is an important concept which has only recently gained widespread attention as a means of identifying the H atom position.
- A study by Edwards et al describes the two states where the H-atom is either situated close to the proton donor (co-crystal) or close to the proton acceptor
Define bond length
Geometrical descriptor used throughout this report to analyse data, characterised by the distance between the centres of the two covalently bonded atoms.
Measured in Angstroms
Define covalent bond
A covalent bond is defined as the sharing of electrons whereby the electrons from two different atoms share the orbital, binding the two atoms together.
What does a higher bond order mean?
Means a shorter bond length due to the stronger pull between the two atoms
Define elastic scattering in terms of XRD
- An incoming X-ray interacts with a crystal structure
- X-ray’s energy is absorbed
- And then scattered by the atom’s electrons
- Then released as a new X-ray after impact.
How does the number of electrons effect how light is scattered?
- Atoms in these crystals are arranged in a regular pattern and are each surrounded by a cloud of electrons
- This allows them to diffract light.
- Each atom can be thought of as a coherent point scatterer.
- The number of electrons surrounding an atom determines how strongly it scatters light