Protein Targetting Flashcards
When is a protein synthesised by a ribosome attached to the ER membrane?
If the protein is destined for the membrane or secretory pathway via co-translational insertion
What happens to the proteins as they are synthesised when the ribosome is attached to the ER membrane?
They are inserted into the lumen
When are proteins synthesised to completion in the cytoplasm?
If the protein is destined for the cytosol, or post-translational import into organalles
What organelles may receive proteins from post-translational import?
- Mitochondria
- Nucleus
- Peroxisomes
What are the requirements for protein sorting?
- Signal
- Receptor
- Translocation machinery
- Energy
Where is the signal for protein sorting?
Intrinsic to the protein
What is the purpose of the receptor in protein sorting?
Recognises the signal, and directs it to the correct membrane
What is the energy needed for in protein sorting?
To transfer the protein to it’s new place
Where is the signal usually located if the protein target is the ER?
Usually at the N-terminus
What eventually happens to the signal if the protein target is the ER?
It is removed
What is the signal when the protein target is the ER?
6-12 hydrophobic amino acids, often preceded by 1 or more basic amino acids
Where is the signal usually located when the protein target in the mitochondrial matrix?
At the N-terminus
What eventually happens to the signal if the target is the mitochondrial matrix?
It is removed
What is the signal when the target is the mitochondrial matrix?
An amphipathic helix of 20-50 residues with alternating R/K and hydrophobic sites
Where is the signal if the target is a peroxisome?
C-terminus
What eventually happens to the signal if the target is a peroxisome?
It remains
Usually, what is the signal if the target is a peroxisome?
S-K-L
Where is the signal if the target is the nucleus?
Internal- can be anywhere in the protein, but has to be exposed on the surface
What eventually happens to the signal when the target is the nucleus?
It remains
What is the signal when the target is the nucleus?
Either one cluster of 5 basic amino acids, or 2 smaller basic clusters separated by about ~10 amino acids
How is a protein imported into the mitochondrial matrix?
- Protein with signal kept unfolded by chaperones
- Signal binds receptor
- Receptor delivers to important pore
- Protein fed through pore in outer membrane
- Protein moves through channel in adjacent inner membrane
- Targeting signal cleaved, allowing protein to fold
What is required for chaperone proteins to bind to mitochondrial proteins?
ATP hydrolyssi
What does a pyruvate dehydrogenase deficiency result in?
A built up of lactic acid, and neurological problems
What causes pyruvate dehydrogenase deficiency?
- Mutation at codon 10 in N-MTS of PDH E1å. subunit, resulting in an arg →pro substitution
- Receptor can’t recognise targeting sequence
- Reduced uptake into mitochondria
Why does the base substitution mean that the receptor can’t recognise the targeting sequence in PDH?
The helix breaking proline destabilises the helical N-MTS, and there is a loss of one basic residue on the hydrophobic face of the amphipathic helix
How does cargo get imported into the nucleus?
- In the cytosol, importin binds cargo containing a nucleur localisation signal
- Can then travel through nuclear pore
- In nucleus, Ran-GTP binds to importin, causing a conformational change that displaces the cargo
- Importin with bound Ran-GTP recycled to the cytoplasm
What is required to make Ran-GTP and release importin?
GTP hydrolysis
What can mutation of nuclear localisation signals lead to?
- Swyer syndrome
- Leri-Weill dyschondrosterosis
- Langer mesomelicdysplasia
What causes Swyer syndrome?
A loss/mutation of NLS in sex determining region Y (SRY) protein, leading to an XY genotype, but outwardly female, as SRY type needed for testis differentiation
What causes Leri-Weill dyschondrosterosis and Langer mesomelicdysplasia?
R173C mutation of NLS of SHOX transcription factor, as SHOX required for skeletal development
How doesLeri-Weill dyschondrosterosis and Langer mesomelicdysplasia present?
Short stature
Describe the process of PTS-1 directed import of peroxisomal matrix proteins
- In cytosol, peroxisomal import receptor binds cargo with PTS
- Peroxisomal protein remains folded, and receptor integrates into translocon, thereby opening it, so whole peroxisomal protein can enter through channel
- Peroxisome targeting sequence dissociates from the receptor
- Receptor is returned to the cytosol
What is required for the returning of the PTS-1 directed import receptor to the cytosol?
ATP hydrolysis
What is meant by co-translational transport?
Proteins delivered as they’re being synthesised
Where does protein synthesis occur when the protein is destined for the ER/secretory pathway?
Bound ribosomes
Are proteins synthesised for the ER/secretory pathway soluble or membrane bound?
Can be either
Where are proteins synthesised on bound ribosomes synthesised into/across?
The ER membrane
What happens once a protein has been synthesised into/across the ER membrane?
- Budding and fusion of ER-to-Golgi vesicles containing proteins to form cis-Golgi
- Cisternal progression form cis-Golgi → medial-Golgi → trans-Golgi
What happens to proteins required by the ER?
There can be retrograde transport from the Golgi to the ER, and from later to earlier Golgi cisternae
Where does sorting occur?
In the trans-Golgi network
How can proteins be secreted?
- Regulated secretion
- Constitutive secretion
What can happen to proteins not secreted?
Sorted into lysosomes
How are proteins sorted into lysosomes?
They bud off from the trans-Golgi network in a transport vesicle, then fuse with an endocytic vesicle to form a late endosome, which then turns into a lysosome
What is in endocytic vesicles?
Material to be broken down
What kind of cells tend to carry out regulated secretion?
Specialised cells;
- Endocrine cells
- Exocrine cells
- Neurocrine cells
What do endocrine cells secrete?
Hormones
What do exocrine cells secrete?
Digestive enzymes
What do neurocrine cells secrete?
Neurotransmitters
Give an example of a polarised secretory cell
The pancreatic acinar
What is true of a polarised secretory cell?
It is very organised
How is a polarised secretory cell organised?
Golgi next to nucleus, secretory vesicles near apical surface of cell
Why is it important that products are secreted at apical surface, not basal, in a polarised secretory cell?
Because the cell is often secreting digestive enzymes
What are proteins with signal peptides attached termed?
Pre-
What happens once a pre- protein is cleaved?
It looses the term pre-
What cleave signal sequences?
Specific enzymes called signal peptidases
What do signal peptidases recognise?
Charged residues adjacent to signal sequences
What is a signal recognition particle (SRP)?
A multi-domain riboprotein
What does a SRP do?
Mediates 3-way association with SRP-receptor in ER, the ribosome and the signal peptide
What does a SRP particle consist of?
A single RNA molecule of ~300 bases long, in complex with 6 different proteins
How are the proteins in SRP named?
P(number), based on the proteins molecular weight
What does P54 in SRP do?
Binds to signal sequences present in secretory proteins
What do other proteins, for example P9 and P14, in SRPs do?
Important for interacting with ribosomes
Describe the process of synthesis of secretory proteins and their translocation across the ER membrane using SRPs
- As protein synthesised, signal sequence protrudes from ribosome- is exposed.
- SRP recognises protruding signal sequence, stopping translation
- SRP binds to signal sequence, and is therefore attached to the ribosome
- SRP is recognised by receptor present in ER membrane
- Hydrolysis of GTP bound to the receptor and the SRP opens the translocon
- Signal peptidase cleaves signal sequence in ER
- Translation continues into ER lumen until finished
Why does the SRP stop translation?
To prevent synthesis in the cytoplasm, as it should be inserted into the secretory pathway
What is the receptor that binds to SRP composed of?
α and ß unit sub unit
What happens when a sub-unit of the receptor and a SRP has GTP bound?
It increases the affinity of a ribosome-SRP complex to receptor, and so binds easier
Why must the translocon remain closed when idle?
Otherwise important things such as calcium ions may leak out
What happens once translation is finished?
The ribosome detaches, the translocon closes and the folded protein is in the lumen
What is insertion into the ER membrane required for the delivery of?
Membrane proteins destined for plasma membrane or internal membrane of secretory pathway
What is the mechanism for delivery of N-terminal signal sequence to translocator the same as?
For a secretory pathway
What exists in the case of a type 1 membrane protein?
A second hydrophobic sequence
What is the purpose of the second hydrophobic sequence in a type 1 membrane protein?
To anchor the protein in the membrane, and prevents further transfer into the ER lumen
What is thesecond hydrophobic sequence in a type 1 membrane protein called?
A stop transfer anchor sequence
What happens once a stop transfer anchor sequence has been implanted into the membrane?
Synthesis continues in cytoplasm until a stop codon is reached
What are the functions of the endoplasmic reticulum?
- Insertion of proteins into membranes
- Specific proteolytic cleavage
- Glycosylation
- Formation of S-S bonds
- Proper folding of proteins
- Assembly of multi-subunit proteins
- Hydroxylation of selected Lys and Pro residues
What is glycosylation of proteins important?
- Correct protein folding
- Protein stability
- Facilitates interactions with other molecules
What may happen to protein stability without glycosylation?
Half life may be reduced
What can happen if theres deficiencies in N-linked glycosylation?
Severe human diseases
Where are sugars added in N-linked glycosylation?
Sugars are added on a asparagine side chain
What does the glycosylation reaction involve?
An amino group
Can every asparagine be glycosylated?
No, needs to be [X]-[Ser/Thr]
Why does the asparagine need to be[X]-[Ser/Thr] to be glycosylated?
To be recognised by the enzyme that transfers oligosaccharides