Nutrigenomics Flashcards

1
Q

What is Nutrigenomics?

A

The study of how food affects a person’s genes and how a person’s genes affect the way the body responds to food. Nutrigenomics is used to learn more about how genes and diet together may affect a person’s health and risk of developing diseases, such as cancer. It may also help find new ways to prevent and treat disease.

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2
Q

Briefly explain Mendelian Inheritance.

A

Mendelian inheritance refers to certain patterns of how traits are passed from parents to offspring. These general patterns were established by the Austrian monk Gregor Mendel, who performed thousands of experiments with pea plants in the 19th century. Mendel’s discoveries of how traits (such as color and shape) are passed down from one generation to the next introduced the concept of dominant and recessive modes of inheritance.

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3
Q

Name Mendel’s 5 “Laws of Heredity.”

A
  1. Each characteristic corresponds to a single gene.
  2. Genes occur in pairs, one on each of a paired set of chromosomes.
  3. Each parent provides one member of each pair of its genes.
  4. Individual genes are inherited randomly.
  5. Some traits or characteristics are “dominant” while others are “recessive.”
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4
Q

What is a “dominant” trait?

A

A trait is considered dominant if it is expressed even though only one member of a pair of chromosomes carries it’s gene.

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5
Q

Define heterozygote.

A

An individual having two different alleles of a particular gene or genes, and so giving rise to varying offspring.

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6
Q

Define allele.

A

One of two or more alternative forms of a gene that arise by mutation and are found at the same place on a chromosome.

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7
Q

Define homozygote.

A

An individual having two identical alleles of a particular gene or genes and so breeding true for the corresponding characteristic.

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8
Q

What is a “recessive” trait?

A

A trait is considered recessive if it is expressed only when both members of a pair of chromosomes carries its gene.

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9
Q

Define phenotype.

A

The set of observable characteristics of an individual resulting from the interaction of its genotype with the environment.

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10
Q

What are the 6 basic patterns of Mendelian inheritance?

A
  1. Autosomal dominant inheritance.
  2. Autosomal recessive inheritance.
  3. X-linked recessive inheritance.
  4. X-linked dominant inheritance.
  5. Y-linked inheritance.
  6. Mitochondrial (or matrilineal) inheritance.
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11
Q

Briefly explain autosomal dominant inheritance.

A

At least one parent carries the gene for the expressed phenotype. This form of inheritance affects both sexes equally and the gene may be transmitted by either the mother or the father.

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12
Q

Briefly explain autosomal recessive inheritance.

A

Both parents carry the gene for the expressed phenotype. Unless a parent is homozygous for the trait, he or she will not express the phenotype (heterozygotes do not express the phenotype).

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13
Q

Briefly explain X-linked recessive inheritance.

A

This inheritance predominantly affects males. Parents usually are unaffected (the mother is typically an “asymptomatic” carrier of the affected gene). There is no male-to-male transmission.

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14
Q

Briefly explain X-linked dominant inheritance.

A

This inheritance predominantly affects females as an affected male will always transmit the trait to his daughters but to none of his sons.

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15
Q

Briefly explain Y-linked inheritance.

A

This inheritance only affects males. All sons of an affected father are affected.

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16
Q

Briefly explain Mitochondrial (or matrilineal) inheritance.

A

This inheritance results from the inheritance of mitochondria from the maternal egg, never from the paternal sperm.

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17
Q

What is a Single Nucleotide Polymorphism?

A

Single nucleotide polymorphisms, frequently called SNPs (pronounced “snips”), are the most common type of genetic variation among people. Each SNP represents a difference in a single DNA building block, called a nucleotide. For example, a SNP may replace the nucleotide cytosine (C) with the nucleotide thymine (T) in a certain stretch of DNA.

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18
Q

List the 4 nucleotides that make up DNA.

A

DNA is made up of four building blocks called nucleotides: adenine (A), thymine (T), guanine (G), and cytosine (C). The nucleotides attach to each other (A with T, and G with C) to form chemical bonds called base pairs, which connect the two DNA strands.

19
Q

Each nucleotide pairs with one other. Please list the pairings for both DNA and RNA.

A

Adenine pairs with Thymine
Guanine pairs with Cytosine
Uracil pairs with Adenine

20
Q

List the nucleotides that make up RNA.

A

RNA is made up of four building blocks called nucleotides: adenine (A), guanine (G), cytosine (C), and Uracil (U).

21
Q

To be classified as a SNP, the variation must be found in at least __% of the population.

A

1%

22
Q

True or False?

SNPs always affect a gene’s function.

A

False

Most commonly, SNPs are found in the DNA between genes. They can act as biological markers, helping scientists locate genes that are associated with disease. When SNPs occur within a gene or in a regulatory region near a gene, they may play a more direct role in disease by affecting the gene’s function.

23
Q

What are the two most studied copies of the MTHFR gene?

A

C677T and A1298C

24
Q

What is Methylenetetrahydrofolate reductase?

A

Commonly referred to by it’s abbreviation, MTHFR is a gene that is crucial for proper methylation, a process that affects many aspects of our health including detoxification, neurotransmitter production, and immune function.

25
Q

What are the implications of the MTHFR (C677T) gene?

A

Overall, presence of this SNP indicates reduced methylation, low B vitamins, and high homocysteine.

26
Q

A person with the MTHFR (C6777T) SNP should consider which supplements?

A

Folic acid (preferably 5-methyltetrahydrofolate)
B2
B6 (pyridoxal 5-phosphate)
B12 (methylcobalamin)
Betaine (trimethylglycine)

27
Q

True or False?

Smoking and heavy drinking have no affect on those with the MTHFR (C677T) SNP.

A

False.

Both of these should be strongly discouraged in patients with this SNP due to the inhibition of methionine synthase, folate depletion in mitochondria and abnormal DNA synthesis and DNA methylation.

28
Q

What foods recommendations should be made for patients with the MTHFR (C677T) SNP?

A

Ensure adequate intake of dark-green leafy vegetables and other B vitamin-rich foods.

29
Q

What is Catechol-O-Methyltransferase?

A

The COMT gene provides instructions for making an enzyme called catechol-O-methyltransferase. Two versions of this enzyme are made from the gene. The longer form, called membrane-bound catechol-O-methyltransferase (MB-COMT), is chiefly produced by nerve cells in the brain. Other tissues, including the liver, kidneys, and blood, produce a shorter form of the enzyme called soluble catechol-O-methyltransferase (S-COMT). This form of the enzyme helps control the levels of certain hormones and helps break down neurotransmitters.

30
Q

List the variations of the COMT gene.

A

Worrier (A genotype)
Warrior (G genotype)
or a mix of the two (AG genotype)

31
Q

What is the significance of the COMT Worrier genotype?

A

The worrier genotype of the COMT gene has been characterized as having heightened cognitive performance at the cost of greater levels of anxiety and vulnerability to stress. It was also found that the worriers exhibited a significantly heightened startle reflex compared with the warriors, and gravitate toward harm avoidance, as opposed to the novelty seeking, as observed with the warrior genotype.

32
Q

What is the significance of the COMT Warrior genotype?

A

This variant confers resilience to stress as well as an emotional advantage over individuals with the AG (worrier) genotype. Additionally, this genotype also confers protection against anxiety and pain susceptibility in these individuals.

33
Q

What is Apolipoprotein E?

A

The APOE gene provides instructions for making a protein called apolipoprotein E. This protein combines with fats (lipids) in the body to form molecules called lipoproteins. Lipoproteins are responsible for packaging cholesterol and other fats and carrying them through the bloodstream. Maintaining normal levels of cholesterol is essential for the prevention of disorders that affect the heart and blood vessels (cardiovascular diseases), including heart attack and stroke.

34
Q

APOE is a multifunctional lipid-transport protein with central roles in what?

A

Lipid metabolism
Brain lipid transport
Glucose metabolism
Neuronal signaling
Neuronal inflammation
Mitochondrial function

35
Q

What are the 3 major isoforms of APOE?

A

APOE2
APOE3
APOE4

36
Q

What is the significance of the APOE3 isoform?

A

It is the parent form and it promotes the clearance of triglyceride-rich lipoproteins and stabilization of plasma lipids.

37
Q

What is an isoform?

A

Protein isoforms are generated from the same gene but with distinct amino acid sequences and biological roles.

38
Q

What is Tumor Necrosis Factor-alpha?

A

Tumor necrosis factor alpha (TNF-α) is a pro-inflammatory cytokine that is secreted from activated macrophages. It plays an important role in host defense against infection; however, excessive release of this cytokine increases inflammation and oxidative stress.

39
Q

What is Cytochrome P450 1A2?

A

The CYP1A2 gene is responsible for the cytochrome P450 enzyme, which is responsible for liver detoxification and the metabolism of drugs. Specifically, it is involved in the metabolism of the xenobiotics caffeine, aflatoxin B1, and acetaminophen. The cytochrome P450 enzyme is also induced by the polycyclic aromatic hydrocarbons that are found in cigarette smoke and metabolizes them into carcinogenic intermediates. Some CYP1A2 polymorphisms can increase or decrease cytochrome P450 activity. In short, this gene affects the rate of caffeine clearance from the body.

40
Q

What is the most common physical outcome associated with the presence of the CYP1A2 genotypes?

A

Depending on the specific genotype, there is either an increased or decreased risk of myocardial infarction.

41
Q

What are the most important dietary recommendations for the CYP1A2 genotypes?

A

The CC and AC genotypes should consume <200 mcg of caffeine per day.
The AA genotype can consume up to 400 mcg of caffeine per day.

42
Q

What is the dietary factor most commonly affected by the presence of the APOE2 genotype and what are the common outcomes?

A

The metabolism of lipids and amino acids are the affected dietary factor. Risk of obesity increases or decreases depending on the genotype and saturated fat intake.

43
Q

What are the most important dietary recommendations for the APOE2 genotypes?

A

The CC genotype should limit saturated fat intake to prevent obesity.
The TC and TT genotypes can consume up to 22 g of saturated fat per day without increasing their risk of obesity.