Nucleotide Metabolism Flashcards
examples of purines
- adenine
- guanine
- xanthine
- hypoxanthine
- uric acid
hypoxanthine is the base for
- inosine
examples of pyrimidines
- cytosine
- thymine
- uracil
nucleoside composed of
- base + sugar
nucleotide composed of
- base + sugar + phosphate
ribose
- OH at 2’ sugar
- less stable
deoxyribose
-H at 2- sugar
sources of nucleotides
- dietary
- de novo synthesis
- salvage pathway
contribution of dietary
why
- relatively small
- most RNA and DNA in diet are degraded and excreted
primary producer of de novo synthesis
- liver
what do you end up with as the common precursor to purine nucleotides and the branch point for the synthesis of different purines
- IMP
- first step of purine synthesis
synthesis of PRPP starting with
- ribose-5-phosphate from PPP
- with ATP
synthesis of PRPP enzyme
- PRPP synthetase
importance of PRPP
- pentose molecule
- synthesis and salvage of purines and pyrimidines
what controls the rate of formation of PRPP
- amount of ribose-5-phosphate
activation of synthesis of PRPP
- Pi
- indicates low nucleotide levels
end product inhibition of synthesis of PRPP
- purine nucleotides
- ADP, GDP
Arts syndrome caused by
- genetic disorder in PRPP synthase
- generally decreased PRPP synthetase
genetics of Arts syndrome
- X-linked
reduction of PRPP synthetase causes
- reduced purine levels
- absence of hypoxanthine from urine and uric acid in serum
increases in PRPP synthetase causes
- increased levels of purines
- gout
body system impacted to Arts syndrome
- severe nervous system abnormalities
second step of purine synthesis
with help from
- PRPP -> 5-phosphoribosyl-1-amine
- with help of glutamine - contributes nitrogen
importance of second step of purine synthesis
- committed step
- irreversible
- major regulated step
enzyme in second step of purine synthesis
- glutamine phosphoribosyl amidotransferase
inhibition of second step of purine synthesis
- AMP, GMP, IMP, XMP
- pathway products
activation of second step of purine synthesis
- PRPP
which form of glutamine phosphoribosyl amidotransferase is the active form?
- the monomer
which form of glutamine phosphoribosyl amidotransferase is the inactive form?
- dimer
high levels of AMP, GMP, IMP on glutamine phosphoribosyl amidotransferase
- forms a less active dimer
high levels of PRPP on glutamine phosphoribosyl amidotransferase
- form active monomeric form
what levels play a major role in regulating purine synthesis
- PRPP
glutamine effect on kinetics of glutamine phosphoribosyl amidotransferase
- near Km
- does not influence rate significantly
PRPP effect on kinetics of glutamine phosphoribosyl amidotransferase
- PRPP levels way below Km
importance of inhibition of glutamine phosphoribosyl amidotransferase by AMP PLUS GMP or IMP
- 2 distinct binding sites
- regulation in additive way
importance of THF in purine metabolism
- carbon donor at 2 steps
what inhibits bacterial folic acid synthesis
- sulfa drugs
why don’t sulfa drugs interference with human purine synthesis and DNA replication
- humans only acquire folic acid by diet
precursors of making THF
- folate
- dihydrofolate
- tetrahydrolate
enzyme that helps make THF
also required
- DHFR
- NADPH
purine synthesis requires what form of THF
N10-formyl-THF
methotrexate often used for
MOA
- antitumor drug
- inhibits DHFR reducing synthesis of THF
good effects of methotrexate
- reduces purine synthesis
- slows down DNA replication
- slows tumor growth
bad effects of methotrexate
- affects normally dividing cells
IMP precursor for
- AMP
- GMP
base of IMP
- hypoxanthine
AMP requires what for energy
- GTP
other molecule AMP requires for energy
- aspartate
- releases fumerate
GMP requires what for energy
- ATP
other molecules GMP requires for energy
- NAD+
- glutamine
enzyme for formation of GMP from IMP
- GMP synthase
effect of high ATP on GMP/GTP synthesis
- increased
enzyme for formation of AMP from IMP
- adenylosuccinate synthetase
effect of high GTP on AMP/ATP synthesis
- increased
what inhibits IMP dehydrogenase
- GMP
what inhibits adenylosucinate synthetase
- AMP
purpose of mycophenolic acid
- immunosuppressant
- reduce lymphocyte proliferation
- prevent graft rejection
MOA of mycophenolic acid
- inhibits IMP dehydrogenase and GMP formation
purpose of ribavirin
- anti-viral
- anti-tumor agent
MOA of ribavirin
- inhibits IMP dehydrogenase
enzyme that converts AMP to ADP
what else is required
- adenylate kinase
- ATP
enzyme that converts GMP to GDP
what else is required
- guanylate kinase
- ATP
what converts ADP, GDP, and NDPs to triphosphates
what else is required
- nucleoside diphosphate kinase
- ATP
purpose of degradation of DNA and RNA
- body to reutilize nucleosides and free bases via salvage pathways
how do we get degraded nucleic acids
- cell death
- RNA or DNA turnover
- diet
nucleic aid is digested where?
by what enzyme?
- stomach
- pepsin
RNAse and DNase secreted by what
- pancreas
what do RNAse and DNase do
- digest RNA and DNA into oligonucleotides
role of phosphodiesterases
- degrade oligonucleotides
- to NMPs and dNMPs
role of nucleotidases or phosphatases
- remove phosphate groups
- convert to nucleosides
role of nucleosidases
- degrade nucleosides
- form free bases plus ribose and deoxyribose
degradation products of pyrimidine nucleotides
- all soluble
degradation products of purine nucleotides
- produce uric acid
- lead to hyperuricemia
hyperuricemia can result in
- gout
degradation occurs mostly where
- liver
degradation of AMP to xanthine process
- AMP -> IMP -> inosine
- AMP -> adenosine -> inosine
- inosine -> hypoxanthine
- hypoxanthine -> xanthine
degradation of GMP to xanthine process
- GMP -> guanosine
- guanosine -> guanine
- guanine -> xanthine
xanthine degraded to
by what enzyme
- uric acid
- xanthine oxidase