nucleic acids Flashcards
nucleic acid is present in
nucleus, mitochondria and chlorophlast
building blocks of nucleic acids
nucleotides- pentose sugars, nitrogenous base and phosphate group
pentose sugar
5 carbon atom
ribsose
RNA
deoxyribose
DNA, second carbon atom has no OH which makes it less reactive so its more stable
Nitrogenous bases
purines, pyramidines
purines
adenine
guanine
double ring
pyrimidines
cytosine
thymine (only DNA)
uracil (only RNA)
single ring
phosphate group
phosphoric acid, H3PO4
Structure of DNA in Deoxyribose
nucleoside- pentose sugar + nitrogenous base
nucleoside formation in purines
H20 and N glycosidic bond formed
Nitrogenous base is attached to the 1st carbon atom of deoxyribose sugar by N-glycosidic bond- condensation reaction- removed by water
nucleoside formation in pyrimidines
H20 and N glycosidic bond formed
Nitrogenous base is attached to the 1st carbon atom of deoxyribose sugar by N-glycosidic bond- condensation reaction- removed by water
nucleotide-
nucleoside + phosphate group
nucleotide formations in purines
phosphate group is attached to the 5th carbon atom of deoxyribose sugar by condensation reaction. phosphodiester bond is formed
nucleotide formations in pyramidines
phosphate group is attached to the 5th carbon atom of deoxyribose sugar by condensation reaction. phosphodiester bond is formed
nucleotide
2 nucleotides are joined by
phosphodiester bond
if a free phosphate group is present in
the 5th carbon atom of deoxyribose sugar it is called 5’ end of polynucleotide, if a free OH group is present in the 3rd carbon atom then it becomes the 3’ end of polynucleotide
features of DNA
made up of 2 polynucleotide chains
backbone of DNA is made up of sugar and phosphate
the 2 chains move in antiparralel direction
if one chain is moving from 5’ to 3’ direction, the other moves in 3’ to 5’ direction
purine always base pairs with
pyramidine
pitch of a helix is
3.4nm
in a pitch where 10 base pairs are present
distance between 2 base pairs is 0.34Nm
Chargoffs rule
he proposed complementary base pair ruling, purine always base pairs with pyrimidines, 2 ring structure base pair with 1 ring. distance between 1 pair is the same
importance of hydrogen bond
provide 3D structure to the molecule
many H2 bond gives stability but not easily separated
individual hydrogen bond can be broken so that the 2 strands are separated during replication/transcription
Hydrogen bond is formed between specific bases so less changes of mistakes
hydrogen bond is formed without any chemical reactions
importance of DNA being stable
maintains genetic information
same genetic information passed into daughter cells
sequence will not change
proteins produced will be functional
Replication
copying of information from parental DNA to daughter DNA during replication, both strands act as a template
New DNA molecule will be identical to each other
the daughter DNA produced will have 1 parental strand and synthesised strand due to this replication is called as semiconservative
enzymes involved in replication
topioisomes
helicase
DNA polymerase
DNA ligase
topoisomerase in replication
uncoils/unwinds DNA/ cuts the backbone( sugar+ phosphate)
helicase in replication
breaks the hydrogen bonds between the complimentary base pair, makes DNA strand available as template
DNA polymerase in replication
used DNA as a template to catalyze the polymerisation of DNA nucleotides, it catalyses the formation of new strand 5’ to 3’ direction
DNA ligase in replication
join okazaki fragments
replication fork due to
high energy requirements takes place in a small portion of DNA
parental stand with the polarity 3’ to 5’
is called the leading strand and synthesis of DNA in continuous. the parental strand with polarity 5’ to 3’ is called a lagging strand, synthesis is discontinous . it takes place in small fragments called okazaki fragments
okazaki fragments are joined by DNA ligase
it helps in making the phosphodiester bond between the fragments
binding proteins
binds to DNA, sterilizes the single-stranded structure generated by helicase. it does not allow parental strand to come down to each other( prevents complimentary base pairing)
RNA primers
to start DNA replication a small portion of RNA primers is required (18-22 bases). DNA polymerase can add nuleotides to an existing strand only. a primer contains a free OH group or the third carbon of sugar to which the phosphate group is attached. at end of replication the primer is removed
gene
a sequence of nucleotides/bases that is part of DNA that codes for a polypeptide
role of DNA polymerase
complimentary base pairing , join nucleotides by phosphodiester, proof read, Rpair
activated nucleotide
present in nucleoplasm during replication they give off 2 phosphate group so that nucleotides many bond with other nucleotide
Central Dogma of molecular biology
transcription
copying of information from DNA to RNA
why only one strand of DNA is copied to mRNA
if both the strands of DNA code for mRNA , 2mRNA molecules will be produced and they are complimentary to each other and form a double helix RNA
this prevents the translation of RNA ( protein synthesis)
if both the DNA strands act as a template, they will cools for 2 mRNA with different sequence which in turn code for 2 different polypeptide chains
enzymes involved in transcription
topoisomerase
helicase
RNA polymerase
RNA polymerase in transcription
produces a new strand 5’ to 3’
DNA strand with polarity 3’ to5’ act as template
transcribed strand. the other strand of DNA with polarity 5’ to 3’ is called as a non-transcribed strand
RNA polymerase binds to the promoter region
and the process of transcription begins..
RNA polymerase moves along the
template strand and add nucleotides opposites to the template strand following complimentary base pair ruling
when RNA polymerase reaches the termination region
it leaves the DNA forming a primary transcript of mRNA. the 2 strands of DNA are joined again by hydrogen bond, primary transcript/ pre mRNA undergoes processing
primary transcript of mRNA contains
coding sequnece (eexon) and non codinh sequence (intron) during processing, introns are looked out by the process of slicing and all the exons are joined by ligase, at 5’ end, guanine is added and at 3’ end adenin is added
similarity between exons and introns
both are part of primary transcript
exons
coding sequence, involved in transalation/required for the formation of polypeptides
not removed from primary transcripts joined to form mRNA. leaves the nucleus and goes to ribosomes
Not involved in regulating activity of gene
introns
non coding sequence
not involved in transalation
removed from primary transcript joined to form mRNA
not part of mRNA
remains in nucleus
may e involved in regulatory activity of gene
codon
sequence of 3 nitrogenous bases in mRNA which code for an amino acid
features of genetic code
totall of 64 codons- 61 code for amino acids,3 stop codon (UAA, UAG,UGA)
AUG has dual function
it codes for methionine and acts as a start codon
genetic code is degenerate
1 amino acid can have more than 1 codon
genetic code is universal
same for prokaryotes and eukaryotes
genetic code is read in
continous manner
reverse transcription
(mRNA makes DNA) - making DNA from RNA with the help of enzyme reverse transcription
mutation
a sudden inheritable change in DNA sequence that can lead to the formation of a dejective polypeptide
substituition
one or more nitrogenous base is changed with another
types of mutations
misence
silent
noncence
miscence
one nitrogenous base changed, one codon changed, a different amino acid appears in the sequence, primary structure changed, it shows that the genetic code is specific
CAC
his
CAA
gen
silent
one nitrogenus base change, one codon changed but codon for same amino acid so no change in primary structure, it shows that the genetic code is degenerate
GAG
Glu
UAG
stop
nonense
comes in between the sequence resulting in a shortness of polypeptide
insertion
adding a nitrogenous base in between the sequence
deletion
removing a nitrogenous base from the sequence. both results in frame shit as a result 0 this, the whole reunite after the mutation changes, a stop codon can come later the eenxyme ventilating in formation of shot
tramelation
takes place in cytoplasm, tRNA leaves the neuleus after transcription through nuclear pore and binds to the ribosome, mRNA caused
Role of tRNA
tRNA Carries amino acids to ribosomes
each type of tRNA carries a specific amino acid
anticodon on tRNA binds to codon on mRNA
tRNA molecules hold amino acids in place for peptide bond formation
tRNA molecules reused
semiconservative replication
each strand of DNA acts as a template for the synthesis of a complementary strand, new DNA has one parental strand and one daughter strand
process of exocytosis
Exocytosis is an active process that requires ATP, process by which materials are removed from cells by the fusion of vesicles containing the substance with the membrane, finally the contents are secreted out of the cell
process of DNA replication
DNA ( double helix) unwinds, hydrogen bonds break between base pairs, complementary base pairing, phosphodiester bonds form, both strands are used as templates, producing 2 identical DNA molecules,
outline how a mutation in GYS1 can lead to the formation of an altered polypeptide where a different amino acid replaces one amino acid
mutation causes the gene to be altered as base substitution changes the sequence of nucleotides so an altered mRNA is produced during transcription and mRNA codon is changed, tRNA brings different anticodons and different amino acid is formed
function of nucleolus
assembles ribosomes for polypeptide synthesis
function of mitochondria
synthesis ATP to supply energy for transcription of GYS1
the function of RER or Golgi body
folds and modifies synthesised polypeptide to produce functioning glycogen synthase
RNA serves as the
genetic material in some plant viruses
similarities between DNA and RNA
- both are macromolecules ( polynucleotides)
- both are build-up of nucleotides
- both can be found in the nucleus
- both contain sugar-phosphate backbone
- both contain N- bases C, G, and A ( purines and pyrimidines)
- their sugars are linked to a phosphate group at one end and a nitrogenous base at the other end
DNA occurs in
nucleus, it is also present in mitochondria and chlorophlast
sugar present in DNA
deoxyribose sugar
Nitrogenous bases in DNA
adenine, guanine ( purines), cytosine and thymine (pyrimidines)