MOCK 1 Flashcards
Energy in living organisms needed for:
Anabolic reactions:
Protein synthesis / DNA replication / glycogenesis / polymerisation
Cellular work:
Active transport / movement of chromosomes / sliding filaments /
movement of vesicles
Movement
Maintenance of body temperature in endotherms
Glucose is stable due to
its activation energy – lowered by enzymes and raising the energy
level of glucose by phosphorylation
Features of ATP that make it suitable as the universal energy currency:
Loss of phosphate / hydrolysis, leads to energy release
Small packets of energy
Small / water-soluble, so can move around cell
Immediate energy donor
Acts as link between energy-yielding and energy-requiring reactions
High turnover
Excess energy during transfer and reactions are converted into
thermal energy
glycolysis happens in
cytoplasm
Glycolysis
Glucose phosphorylated by ATP
Raises energy level / overcomes activation energy to form fructose bisphosphate
Lysis / splitting of glucose / hexose
Breaks down to two TP (triose phosphate)
6C (hexose bisphosphate) into 2 3C (triose phosphate) which is then
dehydrogenated; hydrogen transferred to NAD
2 reduced NAD formed from each TP
4 ATP produced; final net gain of 2 ATP
Pyruvate produced
link reaction happens in
mitochondrial matrix:
link reaction
Pyruvate passes by active transport from the cytoplasm through the outer and
inner membranes of a mitochondrion
Undergoes decarboxylation, dehydrogenation (hydrogen transferred to NAD) and
combined with coenzyme A (CoA) to give acetyl coenzyme A
role of CoA in link reaction
Combines with acetyl group in the link reaction
Delivers acetyl group to the Krebs cycle
Acetyl group combines with oxaloacetate
krebs cycle happens in
mitochondrial matrix
krebs cycle
Reactions are catalysed by enzymes
Acetyl CoA combines with a four-carbon compound (oxaloacetate) to form a six
carbon compound (citrate)
Citrate is decarboxylated and dehydrogenated – through intermediate compounds – to yield CO2 (waste gas) and hydrogens are accepted by hydrogen carriers (NAD
and FAD) to form reduced NAD and reduced FAD
Oxaloacetate is regenerated to combine with another acetyl CoA
Two CO2 are produced
One FAD and three NAD molecules are reduced
One ATP molecule is generated (substrate-level phosphorylation)
oxidative phosphorylation happens in
inner mitochondrial membrane
Oxidative phosphorylation
Reduced NAD / FAD are passed to the electron transport chain (ETC) on the inner
membrane of the mitochondria (cristae)
Hydrogen released from reduced NAD / FAD and splits into electron and proton
Electrons are passed along the electron carriers on the ETC
Energy released from the electrons, pumps protons into the intermembrane space
Proton gradient is set up
Protons diffuse back through the membrane – through ATP synthase – down the
potential gradient
Oxygen acts as the final electron acceptor; acts as proton acceptor to form water;
allows ETC to continue and ATP to be produced
NAD
Comparison between the structures of ATP and NAD:
Both have ribose sugars
ATP has 1 ribose, while NAD has 2
Both have adenine base
NAD has nicotinamide base
ATP has three phosphates
Function of NAD in the cytoplasm of a cell:
Acts as a hydrogen carrier
Acts as a coenzyme / enables dehydrogenases to work
Used in glycolysis / anaerobic respirations
Anaerobic respiration:
Alcoholic fermentation (conversion of glucose to ethanol):
Lactic fermentation (conversion of glucose to lactate):
Alcoholic fermentation (conversion of glucose to ethanol):
In various microorganisms (e.g. yeast) and in some plant tissues
The hydrogen from reduced NAD is passed to ethanol (CH3CHO); releasing the NAD
and allows glycolysis to continue
Pyruvate is decarboxylated into ethanal, which gets reduced to ethanol (C2H5OH) by
the enzyme ethanol dehydrogenase
Irreversible reaction
NAD regenerated, hence glycolysis can continue
Lactic fermentation (conversion of glucose to lactate):
In mammalian muscles when deprived of oxygen
Pyruvate and reduced NAD formed by glycolysis
Pyruvate is decarboxylated by pyruvate decarboxylase into ethanal – which acts as
a hydrogen acceptor from reduced NAD
NAD regenerated, hence glycolysis can continue
Reversible reaction
The structure of the mitochondrion is related to its function:
Double membrane
Inner membrane is folded / cristae has a large surface area; has ATP synthase /
stalked particles; has carrier proteins / cytochromes for the site of ETC /
chemiosmosis
Mitochondrial matrix contains enzymes; is the site of link reaction and the Krebs
cycle
Outer membrane has protein carriers for pyruvate and reduced NAD
Intermembrane space has low pH due to high concentration of protons from ETC,
creating a proton gradient between intermembrane space and matrix, resulting to
the synthesis of ATP
The post-exercise uptake of extra oxygen is called the oxygen debt
Respiratory substrates:
Most energy liberated in aerobic respiration comes from the
oxidation of hydrogen to
water, hence the greater the number of hydrogens in the structure the greater the energy
value
The energy value of a substrate us determined by
burning a known mass of the substance
in oxygen in a calorimeter, where the energy liberated can be determined from the rise in
temperature of a known mass of water in the calorimeter
Lipids have a higher energy value than carbohydrates due to the
higher number of C-H
bonds, hence yields more reduced NAD, so produces more ATP per gram, thus more
aerobic respiration / oxidative phosphorylation / chemiosmosis; fats can only be broken
down aerobically
Respiratory quotient:
Shows the
substrate used in respiration and whether or not anaerobic respiration is
occurring
RQ=
For the aerobic respiration of glucose:
For the aerobic respiration of fatty acid oleic acid:
For anaerobic respiration (e.g. alcoholic fermentation):
Or yields a high value (> 1.0), as some of the
respiration might still be aerobic
No RQ can be calculated for muscle cells using lactate pathway, as no CO2 is
produced:
he respiration of glucose in anaerobic conditions
oxygen is not available as a final
electron acceptor, hence oxidative phosphorylation on the ETC, where most ATP are
produced – produces less ATP than in aerobic conditions as only glycolysis (substrate-linked
phosphorylation) occurs (only produces a net gain of 2 ATP); pyruvate converted to lactate
which is energy rich
Oxygen debt is needed to
Convert lactate to pyruvate in the liver cells, re-oxygenate
haemoglobin, and to meet demands of continued increased in metabolic rate
Adaptations of rice to grow with its roots submerged in water in terms of tolerance to
ethanol from respiration in anaerobic conditions and the presence of aerenchyma:
Aerenchyma in stem and roots which help oxygen to, move / diffuse, to the roots ;
Shallow roots
Air film trapped on underwater leaves
Has fast internode growth
Modified growth regulated by gibberellin
Anaerobic respiration underwater
Tolerance to high ethanol concentration
Ethanol dehydrogenase switched on in anaerobic conditions
Carbohydrates conserved
Respirometers
To measure rate of oxygen consumption during respiration
CO2 produced absorbed by concentrated solution of KOH / NaOH
Oxygen consumption in unit time read through the level of the manometer fluid
against the scale, decrease or increase
Changes in temperature and pressure alter the volume of air in the apparatus,
hence needed to be kept constant (e.g. electronic water bath & a control tube –
with equal volume of inert material to the volume of the organisms to compensate
for changes in pressure)
Can be used to measure the RQ of an organism done by noting down the found
oxygen consumptions; set up with the same controls, but with no CO2 absorbing
chemicals
DCPIP / methylene blue – investigating the rate of respiration using a redox dye
Turns from blue to colourless; the rate of change from blue to colourless is a
measure of the rate of respiration; can be used to investigate effects of
temperature / different substrate concentrations
Photosynthesis is the
the fixation of CO2 and its subsequent reduction to carbohydrate, using
hydrogen from water, taking place in the chloroplast; where two reactions are involved:
light dependent reactions and light independent reactions
The photosynthetic pigments involved fall into two categories:
primary pigments
(chlorophylls) and accessory pigments (carotenoids) of which are arranged in light
harvesting clusters called photosystems (I and II), where several hundred accessory
pigment molecules surround a primary pigment molecule to pass absorbed light energy
towards the primary pigment – the reaction centre
light dependent reactions happens in
thylakoids (holds ATP synthase):
Light energy is necessary for the synthesis of
ATP in photophosphorylation and the
splitting of water (photolysis – photosystem II) into hydrogen ions (combine with a
carrier molecule NADP to make reduced NADP) and oxygen – waste product
Photophosphorylation of ADP to ATP are of two types:
cyclic and non-cyclic
Cyclic phosphorylatio
Only involves photosystem I
Light absorbed by photosystem I passed to the primary pigment resulting to
the excitation of an electron for which is emitted from the chlorophyll
molecule (photoactivation) and captured by an electron acceptor to be
passed onto the electron transport chain
Protons from photolysis pumped into the membrane space to synthesise
ATP from ADP and an inorganic phosphate group (Pi) by the process of
chemiosmosis for which goes to the light independent stage (Calvin cycle) to
produce complex organic molecules
Non-cyclic phosphorylation
Involves both the photosystems
Light is absorbed by both photosystems resulting to excited electrons
emitted from the primary pigments of both reaction centres, which are then
absorbed by electron acceptors and pass along the ETC
The primary pigment of photosystem I absorbs electrons from photosystem
II for which receives replacement electrons from the splitting of water
(photolysis)
Protons from photolysis pumped into the membrane space to synthesise
ATP from ADP and an inorganic phosphate group (Pi) by the process of
chemiosmosis for which goes the light independent stage (Calvin cycle) to
produce complex organic molecules
Light independent reaction (Calvin cycle) happens in
stroma
Light independent reaction (Calvin cycle) – stroma :
Carbon dioxide reaches the inside of a palisade mesophyll cell from the external
atmosphere through the stomata by diffusion down a concentration gradient, and
passes through air spaces; dissolves in film of water on cell surface then diffuses
through cell wall / surface membrane of palisade cells
Using a series of enzyme-controlled reactions:
Fixation of carbon dioxide by combination with RuBP, a 5C compound,
(carboxylation) – using Rubisco enzyme – to form an unstable 6C
intermediate, resulting to 2 molecules of GP, a 3C compound; using ATP and
reduced NADP from the light dependent reaction reduces GP to TP for
which most of it regenerates to form RuBP while others undergo
rearrangement of carbons to form pentose sugars / lipids / amino acids /
hexose sugars; ATP is required for the phosphorylation of ribulose
phosphate into ribulose bisphosphate
Role of accessory pigment in photosynthesis:
passes energy to primary pigment; absorb
light wavelengths that primary pigment does not; forms part of the light-harvesting cluster
of pigments (photosystem)
Chlorophyll absorb mainly in the
red and blue-violet regions of the line spectrum and
reflects green light; whereas carotenoids absorb mainly in the blue-violet region of the
spectrum
An absorption spectrum
is a graph that shows the, absorbance / absorption, of different
wavelengths of light by chloroplast pigments
An action spectrum
is a graph of the rate of photosynthesis at different wavelengths of
light, showing the effectiveness of different wavelengths related to their absorption and
energy content
action spectrum
nvestigation to determine the effect of light intensity or light wavelength on the rate of
photosynthesis using a
redox indicator (e.g. DCPIP) and a suspension of chloroplasts (the
Hill reaction):
The main external factors that affects the rate of photosynthesis:
light intensity and
wavelength, temperature, and carbon dioxide concentration
The rate of any process which depends on a series of reactions is limited by
the slowest
reaction in the series
Chromatography – to
separate and identify chloroplast pigments and carry out an
investigation to compare the chloroplast pigments in different plants (reference should be
made to Rf values in identification):
chromatography process
Usage of a chromatogram
Place spot of pigments on pencil mark at base of the paper
Dry and repeat to concentrate spot
Dip the paper / chromatogram in the solvent (ethanol) to travel up the paper
Measure distance travelled by solvent (front) and pigment (spot)
Calculate the Rf value = distance travelled by pigment spot / distance travelled by
solvent front
Look up / compare results with known Rf values to identify pigments
Chloroplasts can move within
palisade cells to maximise the amount of light absorption of
light and to avoid damage by high light intensities
In the light independent stage of photosynthesis, carbon dioxide combines with RuBP
to
form a six-carbon compound, which immediately splits to form two three-carbon
molecules (GP), these plants are called C3 plants; However, maize and sorghum plants –
and most other tropical grasses – do something different, as their first compound that isproduced in the light independent reaction contains four carbon atoms, therefore are
called C4 plants
Rubisco catalyses
he reaction of both carbon dioxide and RuBP; oxygen with RuBP
(photorespiration), causing less photosynthesis to take place as less RuBP available to
combine with carbon dioxide; occurs readily in high temperatures and light intensity
C4 plants keep
RuBP and Rubisco away from high oxygen concentrations in the bundle
sheath cells around the vascular bundles
Carbon dioxide is absorbed by the
tightly mesophyll cells (so O2 cannot reach the bundle
sheath cells), which contains PEP carboxylase enzyme (has high optimum temperature and
does not accept O2) catalysing the combination of CO2 with a 3C compound, PEP, resulting
to oxaloactetate, 5C, which is converted into malate and passed to the bundle sheath cells – hence maintaining a high concentration of carbon dioxide – for which CO2 is fixated with
RuBP in the light independent reaction; photorespiration is avoided
The high surface area of the
thylakoid membrane and the large size and number of grana
results to the high absorption of light, hence high photophosphorylation and more
chemiosmosis; the large thylakoid space helps increase the proton gradient hence more
ATP and reduced NADP produced, thus high rate of light independent reaction
Homeostasis
to maintain a constant/stable internal environment in the body
The importance of homeostasis in a mammal:
To maintain a constant internal environment of blood and tissue fluids within
narrow limits / set point, effects:
Low temperature, consequence: slowed metabolism / enzymes less active
High temperature, consequence: enzymes denatured
Low water potential, consequence: water leaving cells / cells shrink
High water potential, consequence: water enters cells / cells burst
Low blood glucose, consequence: effect on respiration
High blood glucose, consequence: water leaving cells / cells shrink
Control of pH, consequence: enzymes become less active
Control mechanisms use a negative feedback loop involving:
Receptor (sensor) detects changes in both internal and external stimuli (any
change in a physiological factor being regulated) away from the set-point; nerve
impulse sent to a central control or hormone released, which then reaches the
effectors (muscles and glands) / target organs; effector performs corrective action,
hence factor returns to set-point
Continuous monitoring of the factor by receptors produces a
steady stream of information
to the control centre that makes continuous adjustments to the output, hence the factor
fluctuates around a particular set point
Negative feedback:
the mechanism to keep changes in the factor within narrow limits, by
increasing or decreasing accordingly during a change in the factor
Two coordination systems in mammals:
Nervous system, by electrical impulses transmitted along neurones
Endocrine system, by hormones (chemical messengers) travel in the blood
Thermoregulation
is the control of body temperature involving both coordination systems,
controlled by the hypothalamus – receives constant input of sensory information about temperature of the blood (by the themorecepter cells monitoring the core temperature)
and the surroundings (skin receptors)
If there is a decrease in temperature,
ypothalamus sends impulses that activate several
physiological responses which decreases the loss of heat from the body and increases heat
production:
physiological responses which decreases the loss of heat from the body and increases heat
production:
Vasoconstriction – contraction of the muscles in the walls of the arterioles in skin
surface, narrowing the lumens, reducing the supply of blood, hence less heat lost
from the blood
Shivering – involuntary contraction of the skeletal muscles generate heat, absorbed
by the blood
Raising body hairs – contraction of the muscles attached to the hairs, increasing the
depth of fur and the layer of insulation, trapping air close to the skin
Decrease in sweat production – reduces heat loss by evaporation from skin surface
Increase secretion of adrenaline – increases the rate of heat production in the liver
A decrease in temperature gradually (e.g. winter),
the hypothalamus releases a hormone
which activates the anterior pituitary gland to release thyroid stimulating hormone (TSH)
what does TSH do
TSH stimulates the thyroid gland to secrete thyroxine hormone into the blood,
increases the metabolic rate, increases the heat production
When temperature starts to increase again, the hypothalamus responds by
reducing the release of TSH by the anterior pituitary gland, hence less thyroxine
released from the thyroid gland
If there is a increase in temperature
hypothalamus increases the loss of heat from the
body and reduces heat production:
hypothalamus increases the loss of heat from the
body and reduces heat production:
Vasodilation – relaxation of the arterioles in skin, hence it widens, more blood flows
to the capillaries, heat energy lost
Increasing sweat production – sweat glands increase production of sweat which
evaporates on the surface of the skin, removing heat from the body
Lowering body hairs – relaxation of the muscles attached to the hairs, hence they
lie flat, reducing the depth of fur and layer of insulation
Excretion:
the removal of unwanted products (e.g. ammonia – toxic) of metabolism
Urea is produced in the
liver from excess amino acids, transported to the kidney in
solution in the blood plasma through diffusion from liver cells, which will then be
removed from the blood, dissolved in water and excreted as urine
The formation of urea from excess amino acids by liver cells:
Deamination / removal of amine group and ammonia (NH3) formed, which is then
combined with carbon dioxide forming the urea cycle
Ammonia is a soluble and toxic compound, hence needed to be converted into urea
(main nitrogenous excretory product) – less soluble and less toxic
Structure of kidney:
Each kidney receives blood from a renal artery; return blood via a renal vein
Narrow tube – ureter – carries urine from kidney to bladder
Urethra – single tube – carries urine to the outside of the body
A longitudinal section through a kidney (Fig 14.6) shows its main areas
Capsule covering the whole kidney
Cortex lying beneath the capsule
Medulla – central area of kidney
Pelvis – where ureter joins
A kidney is made up of thousands of
tiny tubes called nephrons and many blood
vessels
nephron structure
One end of the nephron forms a cup-shaped structure called Bowman’s capsule,
surrounding a tight network of capillaries called a glomerulus (both located on the
cortex)
The tube then forms a twisted region called the proximal convoluted tubule
Which then runs down towards the centre of the kidney (medulla) forming the loop
of Henle
It then runs back upwards into the cortex forming another twisted region called
distal convoluted tubule
Before finally joining a collecting duct that leads down through the medulla and
into the pelvis of the kidney
Each glomerulus is supplied with blood from a branch of renal artery called an
afferent arteriole
The capillaries of the glomerulus rejoins to form an efferent arteriole, which leads
off to form a network of capillaries running closely alongside the rest of the
nephron, where it then flows into a branch of the renal vein
The kidney makes urine in a two-stage process:
Ultrafiltration – filtering of small molecules including urea into the Bownman’s
capsule from the blood
Selective reabsorption – taking back useful molecules from the fluid in the nephron
as it flows along
Water potential:
tendency of water molecules to move from one region to another
Ultrafiltration
The blood in the glomerular capillaries is separated from the lumen of the
Bowman’s capsule by two cell layers (endothelium of the capillary and epithelial
cells (podocytes – having finger-like projections with gaps in between them) making
the inner lining of the Bowman’s capsule) and a basement membrane The diameter of lumen of the afferent arteriole is wider than efferent arteriole,
which leads to high blood pressure (hydrostatic pressure) and low pressure in the
Bowman’s capsule, hence plasma/fluid passes through the fenestrations between
the endothelial cells of the capillaries; however, red and white blood cells / large
proteins (plasma proteins) / molecules greater than 68 000(MM), cannot pass
through due to the basement membrane which acts as a selective barrier; filtrate
through the basement membrane can freely pass through the podocytes due to its
fenestrations and forced into the Bowman’s capsule (renal capsule)
Reabsorption in the proximal convoluted tubule
Process called selective reabsorption (above 180 mg, no further absorption, as
carriers in the PCT are saturated)
Lining of the proximal convoluted tubule is made of a single layer of cuboidal
epithelial cells
single layer of cuboidal
epithelial cells which are adapted to their function of reabsorption by having:
Microvilli to increase the surface area of the inner surface facing the lumen
to increase absorption of Na+ / glucose / amino acids
Tight junctions to hold adjacent cells together so that fluid cannot pass
between the cells (all reabsorbed substances must go through the cells)
Many mitochondria to provide ATP for sodium-potassium (Na+-K+) pump
proteins in the outer membranes of the cells
Many co-transporter proteins in the membrane facing the lumen
Folded basal membrane to increase surface area to increase sodium
potassium pumps to move Na+ into the blood
More ER for increase in protein synthesis
The folded basal membranes of the cells lining the proximal convoluted tubule are
those nearest the blood capillaries; s
odium–potassium pumps in these membranes
move sodium ions out of the cells; the sodium ions are carried away in the blood,
lowering the concentration of sodium ions inside the cell, so that they passively
diffuse into it, down their concentration gradient, from the fluid in the lumen of the
tubule; however, sodium ions do not diffuse freely through the membrane – only
enter through special co-transporter proteins in the membrane, each of which
transports something else, such as a glucose molecule or an amino acid, at the
same time as the sodium ion (the passive movement of sodium ions into the cell
down their concentration gradient provides the energy to move glucose molecules,
against a concentration gradient – indirect or secondary active transport, since the
energy (as ATP) is used in the pumping of sodium
All of the glucose, amino acids, vitamins and many Na+ and Cl- ions, some urea and
most water are
reabsorbed from the glomerular filtrate into the blood, which
increases the water potential in the filtrate, hence water moves down this gradient
through the cells into the blood
Reabsorption in the loop of Henle and collecting duct
absorption in the loop of Henle and collecting duct
Descending limb is permeable to water, ascending limb does not
In the ascending limb, active transport of Na+ and Cl- ions out of loop into the tissue
fluid, which decreases the water potential in the tissue fluid and increases the
water potential of the ascending limb’s water potential
Descending limb permeable to both water and Na+ and Cl- ions, hence as fluid
moves down the loop, water from filtrate moves down a water potential gradient
into the tissue fluid by osmosis, while Na+ and Cl- ions diffuse into the loop, down
their potential gradient, thus the fluid becomes more concentrated towards the
bottom of the loop; the longer the loop, the more concentrated the fluid can
become
Concentrated fluid flows up the ascending limb where Na+ and Cl- ions diffuse out in
the lower part of ascending limb; and active transported out on the upper part of
ascending limb Counter-current multiplier mechanism used – fluid flowing in vertically opposite
directions to maximise the concentration built up of solutes both inside and outside
the tube at the bottom of the loop
As fluid flows up the ascending limb of the loop of Henle,
it loses sodium and
chloride ions as it goes, so becoming more dilute and having a higher water
potential; cells of the ascending limb of the loop of Henle and the cells lining the
collecting ducts are permeable to urea which diffuses into the tissue fluid, hence
urea is also concentrated in the tissue fluid in the medulla, so water can move out
of the collecting duct by osmosis, due to the tissue fluid’s high solute concentration
and low water potential
Reabsorption in the distal convoluted tubule and collecting duct
Na+ ions are actively pumped from the fluid in the tubule into the tissue fluid, into
the blood
K+ ions are actively transported into the tubule, where the rate of transfer of the
two ions are variable, helps regulate the concentration of these ions in the blood
Osmoregulation:
: the control of the water potential of body fluids
Roles of hypothalamus, posterior pituitary, collecting ducts and ADH in osmoregulation:
Hypothalamus detects changes in water potential of the blood, as osmoreceptors
(in the hypothalamus) shrink when there is a low water potential (ADH produced in
hypothalamus), and released into the blood via the posterior pituitary gland
Nerve impulses are sent from the hypothalamus to posterior pituitary gland
ADH bind to receptor proteins on the collecting duct cell surface membranes and
affects the collecting duct by activating series of enzyme controlled reactions,
activating vesicles containing aquaporins in their membranes to move to cell
surface membrane on lumen side; fuses with the cell surface membrane, hence
increases water permeability of collecting duct cells, causing more water
reabsorption / more concentrated urine, as water moves through the aquaporins,
out of the tubule into the tissue fluid down water potential gradient
Homeostatic control of blood glucose concentration is carried out by
two hormones
secreted by endocrine tissue – consisting of groups of cells known as islets of Langerhans
(containing cells secreting glucagon; cells secreting insulin) in the pancreas
Insulin is
a signalling molecule which binds to a receptor in the cell surface membrane and
affects the cell indirectly through the mediation of intracellular messengers
signalling molecule which binds to a receptor in the cell surface membrane and
affects the cell indirectly through the mediation of intracellular messengers, following
these steps
Increase in blood glucose concentration detected by β cells in the islets of
Langerhans, hence more insulin secreted into the blood
Resulting to increase in glucose absorption in the liver by phosphorylating glucose –
traps glucose inside cells as phosphorylated glucose cannot pass through the
transporters in the cell surface membrane; increases the permeability of glucose in
muscle / fat cells by addition of GLUT 4 proteins to cell surface membranes of these
cells; increases the rate of respiration of glucose; conversion of glucose to glycogen;
inhibits secretion of glucagon; process called negative feedback
The action of glucagon on liver cells in the regulation of blood glucose concentration:
Decrease in blood glucose concentration detected by cells and responds by
secreting glucagon
Glucagon binds to receptors in cell surface membrane of liver cell
Receptor changes conformation and G-protein activated
Adenylate cyclase activated causing ATP to be converted to cyclic AMP which is a
second messenger
Cyclic AMP activates kinase protein which activate enzymes through
phosphorylation resulting to enzyme cascade
Glycogen phosphorylase activated catalysing the breakdown of glycogen to glucose
Glucose diffuses out of liver cell through GLUT2 transporter proteins into the blood
Gluconeogenesis – glucose made from amino acids and lipids
Increase in blood glucose concentration
The main stages of cell signalling in the control of blood glucose concentration by
adrenaline:
Adrenaline binds to receptors in the cell surface membrane
Receptor changes conformation and G proteins activated
Adenylyl cyclase activated resulting to ATP converted to cyclic AMP which is a
second messenger
Cyclic AMP activates kinase protein which activates enzymes through
phosphorylation resulting to enzyme cascade
Glycogen phosphorylase activated catalysing the breakdown of glycogen to glucose
Glucose diffuses out of liver cell through GLUT2 transporter proteins into the blood
Increase in blood glucose concentration
Diabetes mellitus are of two forms:
Type 1 diabetes: insulin-dependent diabetes, where pancreas is incapable of
secreting sufficient insulin, early onset
Type 2 diabetes: non-insulin-dependent diabetes, where pancreas does secrete
insulin, but liver and muscle cells do not respond properly to it, late onset –
associated with diet and obesity
The symptoms of diabetes mellitus include the tendency to drink a lot of water and a loss
of body mass because:
High blood glucose concentration causes decrease in water potential of the blood,
which is detected by osmoreceptors resulting to the feelings of thirst
Less glucose converted to glycogen, as glucose lost in urine (above the renal
threshold), hence glucose is not taken up by cells, hence fats are metabolised,
resulting to build up in ketones which decreases the blood pH causing come
Dip stick can be used to measure glucose concentration by:
Immobilised glucose oxidase enzyme stuck onto pad at the end of the stick
Dip stick lowered into urine and if it contains glucose, glucose oxidase oxidises
glucose into gluconic acid (gluconolactone) and hydrogen peroxide
Peroxide reacts with chromogen (using peroxidase enzyme) on pad to form a brown
compound, due to the oxygen produced resulting to the oxidation of chromogen by
oxygen, which produces a range of colour
Darkness of colour / range of colours is matched against a colour chart and is
proportional to concentration of glucose (the darker the colour, the more glucose
present)
Does not give the current blood glucose concentration (only that it is higher than
the renal threshold
Important to keep a fixed time in observing colour changes
Biosensor can be used to measure glucose concentration by:
The pad contains glucose oxidase enzyme reacts with glucose in the blood to
produce gluconolactone and oxygen
Oxygen is detected and an electric current is generated which is detected by an
electrode, amplified and gives numerical value of blood glucose concentration
The greater the current, the greater the reading from the biosensor, the greater the
glucose present
Advantages of biosensor over dip stick:
Gives the actual reading of blood glucose concentration
Re-usable
Quantitative, hence more precise reading
Stomata have daily rhythms of
opening and closing (opens during the day to maintain the
inward diffusion of carbon dioxide and the outward diffusion of oxygen and water vapour
in transpiration; the closure of stomata at night when photosynthesis does not occur to
reduce rates of transpiration and conserve water) and also respond to changes in
environmental conditions to allow diffusion of carbon dioxide and regulate water loss by
transpiration
stomata open in response to
Increase in light intensity to gain CO2 for photosynthesis, allowing oxygen to
diffuse out
Allows transpiration to occur for which brings water / mineral ions in for
photosynthesis
stomata close in response to
Decrease in light intensity as CO2 is not required (no photosynthesis)
Low humidity, high temperature, high wind speed and water stress
To prevent water loss by transpiration (maintains cell turgidity)
Guard cells open when they gain
water to become turgid and close when they lose water
to become flaccid, by osmosis
Mechanism by which guard cells open stomata:
Proton pumps in cell surface membranes of guard cells actively pump H+ out of the
cells, which causes a lower H+ concentration inside the cell, hence inside of cell is
more negatively charged than the outside
K+ channels open to move K+ into the cell by facilitated diffusion down an
electrochemical gradient
Water potential of cell decreases, due to increase in solute potential, hence water
moves into the cell by osmosis down a water potential gradient through the
aquaporins in the membrane
Volume of the guard cells increases becoming turgid opening the stoma
Unequal thickness of the cell wall of the guard cells (thicker wall adjacent to the
pore
Stomata close when
proton pumps in cell surface membranes of guard cells stop and K+
ions diffuses out of the guard cells through K+ channels to enter the neighbouring cells,
creating a water potential gradient in the opposite direction, hence water leaves the guard
cells so it becomes flaccid and stoma closes, reducing the CO2 uptake for photosynthesis
and reduces rate of transpiration; in conditions of water stress, abscisic acid (ABA)
hormone stimulates stomatal closure
The role of abscisic acid in the closure of stomata:
Plant secretes abscisic acid during times of water stress
Abscisic acid is a stress hormone which binds to receptors on the cell surface
membranes of guard cells, and inhibits proton pump (H+ not pumped out of cell)
High H+ concentration inside cell, resulting to change in charge, stimulating Ca2+
influx into the cytoplasm which acts as second messenger, and encourages K+ efflux
(K+ channels open)
Water potential of the cell increases, hence water moves out of cell by osmosis
Volume of guard cells decreases, becoming flaccid
The response is very fast
The mammalian nervous system is made up of
central nervous system (brain and spinal
cord) and peripheral nervous system (cranial and spinal nerves)
Communication using nerve action potentials
(brief changes in the distribution of electrical
change across the cell surface membrane, caused by rapid movement of Na+ and K+ ions) /
impulses which travel along nerve cells (neurones) at very high speeds to their target cells
Compare the nervous and endocrine systems as communication systems that co-ordinate
responses to changes in the internal and external environment in mammals:
differences
similarities Compare the nervous and endocrine systems as communication systems that co-ordinate
responses to changes in the internal and external environment in mammals
Motor neurone:
Dendrites lead to cell body containing nucleus, many mitochondria and RER
Has one long axon with synaptic knobs at the end furthest from cell body
For some of its length, covered in myelin sheath made by specialised cells: Schwann
cells
Has small uncovered areas of axon between Schwann cells: nodes of Ranvier
Sensory neurone:
Dendrites at the ends of the long axon with synaptic knobs, with the cell body
containing nucleus, many mitochondria and RER near the source of stimuli or
ganglion
For some of its length, covered in myelin sheath made by specialised cells: Schwann
cells
Relay neurone found in the
central nervous system
The functions of sensory, relay and motor neurones in a reflex arc:
Sensory neurone – receives impulses from receptor
relay neurone – passes impulses on to motor neurone
motor neurone – sends impulses to the effector
The transmission of action potential in a myelinated neurone and its initiation from a
resting potential
Initially at a resting potential (p.d. between -60 mV to -70mV), as inside is slightly
more negative than the outside, which is produced and maintained by sodium
potassium pumps in the cell surface membrane (3 Na+ removed for every 2 K+
brought in across the potential gradient by active transport)
Na+ channels open and Na+ enters the cell down their electrochemical gradient,
where the p.d. becomes positive (+40 mV) due to depolarisation
Na+ channels close and K+ channels open, hence K+ moves out of cell down their
concentration gradient, hence p.d., becomes negative due to repolarisation
Local circuits occur
Myelin sheath acts as an insulator hence prevents movement of ions, hence action
potentials / depolarisation occurs only at nodes of Ranvier, process called saltatory
conduction (action potential jumps from node to node)
Process is a one-way transmission due to the refractory period
If the p.d. generated does not reach the threshold potential (between – 60 mV and –70 mV), action potential does not occur
The length of the refractory period determines the
maximum frequency at which impulses
are transmitted along neurones, as the transferred region will still be recovering from the
action potential it just had (sodium ion voltage-gated channels are ‘shut tight’ and cannot
be stimulated to open, however great the stimulus)
The difference in strength of stimulus causes the
different frequency of action potentials,
where a strong stimulus produces a rapid succession of action potentials, each one
following along the axon just behind its predecessor; a weak stimulus results in fewer
action potentials per second; a strong stimulus stimulate more neurones than a weak
stimulus
The brain can therefore interpret the frequency of action potentials arriving along the axon
of a sensory neurone, and the number of neurones carrying action potentials, to get
information about the strength of the stimulus being detected. The nature of the stimulus,
whether it is light, heat, touch or so on, is deduced from the position of the sensory
neurone bringing the information. If the neurone is from the retina of the eye, then the
brain will interpret the information as meaning ‘light’
Sensory receptor cell
a cell that responds and converts a stimulus into an electrical
impulse by initiating an action potential (e.g. chemoreceptor)
The roles of sensory receptor cells in detecting stimuli and stimulating the transmission of
nerve impulses in sensory neurones (e.g. chemoreceptor cell found in human taste buds):
Chemicals act as a stimulus
Each chemoreceptors contain a specific receptor protein which detects a particular
chemical
Sodium ions diffuse into cell via Microvilli, causing the membrane to depolarise,
which increases the positive charge inside the cell known as receptor potential
Sufficient stimulation (above the threshold potential (below will only cause a local
depolarisation of the receptor cell)) of Na+, stimulates opening of calcium ion
channels, hence calcium ions enter cell, causing movement of vesicles containing
neurotransmitter which is released exocytosis
Neurotransmitter stimulates action potential in sensory neurone
Chemoreceptors are transducers as they convert energy in one form into emergy in
an electrical impulse in a neurone
All or nothing law where neurones either transmit impulses from one end to
another or they do not
Chemoreceptor cells found in the papilla of the tongue
The gap between two neurones is called
synaptic cleft; the parts of the two neurones near
the cleft, plus the cleft itself, make up a synapse
An action potential occurs at the
cell surface membrane of the presynaptic neurone
Action potential causes the release of molecules of transmitter substance into the cleft
The molecules of neurotransmitter diffuse across the synaptic clef and bind temporarily on
the postsynaptic neurone
The postsynaptic neurone responds to all the impulses arriving at any one time by
depolarising; sends impulses if the overall depolarisation is above its threshold
Synapses that uses acetylcholine as its neurotransmitter is known as cholinergic synapses
How a cholinergic synapse functions:
Action potential reaches presynaptic membrane causing depolarisation, and Ca2+
channels to open in the presynaptic membrane
An influx of Ca2+ ions (facilitated diffused down its electrochemical gradient),
stimulates vesicles containing ACh to move towards the presynaptic membrane and
fuse with it
ACh released into synaptic cleft by exocytosis, and diffuses across the cleft
ACh binds to receptor proteins on the postsynaptic membrane; proteins change
shape causing Na+ channels to open
Na+ facilitated diffuse into postsynaptic neurone causing depolarisation of the
postsynaptic membrane creating an action potential, if the potential difference is
above the threshold for that neurone
Acetylcholinesterase catalyses the hydrolysis of each ACh molecule into acetate and
choline to prevent permanent depolarisation of the postsynaptic neurone; choline
is taken back into the presynaptic neurone to be combined with acetyl CoA to form
ACh once more and transported into the presynaptic vesicles
Role of calcium ions in synaptic transmission:
Enter the presynaptic neurone, and causes vesicles containing acetylcholine (ACh)
to fuse with the presynaptic membrane, hence releasing ACh into the synaptic cleft
(exocytosis)
Some insecticides have a similar structure to acetylcholine, hence affects the functioning of
acethycholinesterase by:
Acting as a competitive inhibitor – complementary to the active site – hence binds
with the active site, this ACh is not broken down
A: Na+ cannot enter post-synaptic neurone hence no depolarisation / action potential in
the post-synaptic neurone
B: Ca2+ cannot enter pre-synaptic neurone hence vesicles cannot move towards the pre
synaptic membrane
C: ACh cannot be released into synaptic cleft
D: ACh is not broken down hence continuous depolarisation / action potential, of post
synaptic neurone
Ways in which the toxin (acts at cholinergic synapses) in cobra venom may cause muscle
paralysis:
Binds to receptors on postsynaptic membrane, hence stops ACh from binding,
inhibiting depolarisation, hence no action potentials / Na+ ion channels stay shut
Stimulates ACh receptors causing continuous depolarisation / opens Na+ ion
channels
Stops the release of ACh from presynaptic neurone
Inhibits acetyl cholinesterase
The roles of synapses in the nervous system
Ensures one-way transmission as vesicles are only found in the presynaptic
neurone, hence ACh will only be released from presynaptic neurone
Involved in memory and learning, where an increase in the number of synapses
allows more interconnection of nerve pathways for memory, allowing a wider range
of response
Allows interconnection of nerve pathways
The roles of synapses in the nervous system
Ensures one-way transmission as vesicles are only found in the presynaptic
neurone, hence ACh will only be released from presynaptic neurone
Involved in memory and learning, where an increase in the number of synapses
allows more interconnection of nerve pathways for memory, allowing a wider range
of response
Allows interconnection of nerve pathways
Striated muscle tissue makes up the
many muscles in the body that are attached to the
skeleton; only contracts when it is stimulated to do so by impulses that arrive via motor
neurones; muscle tissue like this is described as being neurogenic, whereas the cardiac
muscle in the heart is myogenic – it contracts and relaxes automatically, with no need for
impulses arriving from neurones
Multinucleate muscle fibres are called
synctium instead of cell; sacrolemma instead of cell
surface membrane; sarcoplasm instead of cytoplasm; sarcoplasmic reticulum (SR) instead
of endoplasmic reticulum; the deep infolding of the cell surface membrane into the interior
of the muscle fibre is called transverse system tubules or T-tubules, which runs close to
the sarcoplasmic reticulum
Membranes of the sarcoplasmic reticulum have
huge numbers of protein pumps that
transport calcium ions into the cisternae of the SR
The sarcoplasm contains a large number of
mitochondria, packed tightly between the
myofibrils to carry out aerobic respiration, generating the ATP that is required for muscle
contraction
Each myofibrils are made up of
filaments (made from protein), where parallel groups of
thick filaments (made up of myosin) lie between groups of thin ones (made up of actin),
creating the stripes or striations
The darkest parts of the A band are produced by the
overlap of thick and thin filaments,
while the lighter area within the A band, known as the H band, represents the parts where
only the thick filaments are present
The Z line provides an attachment for
the actin filaments, while the M line does the same
for the myosin filaments; the part of a myofibril between two Z lines is called a sarcomere
The sliding filament model of muscular contraction (shortening of I-band):
When sarcoplasmic reticulum (SR) depolarised
Calcium ion channels open
Tropomyosin covers / uncovers the myosin binding sites on actin; when calcium
ions diffuse down a potential gradient through open channels from the SR to bind
to troponin hence changes shape (so tropomyosin and troponin move away),
allowing myosin to bind to actin, forming cross-bridges
ATP hydrolysis (ATP → ADP + Pi) causes myosin head (acts as ATPase) to tilt
ADP and Pi detach and myosin head swings back / returns to previous position
Actin is moved and power stroke occurs
New ATP binds
Myosin head detaches from actin and the cross-bridges break
No ATP in striated muscle results to:
No pumping of calcium ions into SR
No detachment of myosin heads:
Hence no hydrolysis of ATP
Hence no cross bridge formation
Hence no power stroke / pulling of actin
Hence no recovery stroke / myosin head does not return to original position
Stimulating contraction in striated muscle:
Action potential arrives resulting to the opening of Ca2+ channels in the presynaptic
membrane, hence Ca2+ enters into the presynaptic neurone
Releasing vesicles containing acetylcholine to move towards and fuse to the
presynaptic membrane
Acetylcholine released by exocytosis and diffuses across the cleft; binds to
receptors on the sacrolemma
Na+ channels open, hence Na+ ions enter to depolarise the sacrolemma and
generate action potential
Impulses then pass along the T-tubules towards the centre of the muscle fibre
Causing Ca2+ ions to bind with the troponin molecules
When there is no longer stimulation from the motor neurone, no impulses
conducted along the T-tubules, hence the Ca2+ channels close and calcium pumps
move Ca2+ back into stores in the SR; as Ca2+ leaves the binding sites on troponin,
tropomyosin moves back to cover the myosin-binding sites, hence no more cross
bridges
Muscles also have another source of ATO produced from
creatine phosphate, keeping
their stores in their sarcoplasm as their immediate source of energy
Venus fly trap:
Each trap consists of a pair of modified leaves joined by a midrib of hinge cells
The modified leaves have touch-sensitive hairs; if two hairs are touched within 20
seconds, or the same hair is touched twice in rapid succession, the trap closes
The surface of the lobes has many glands that secrete enzymes for the digestion of
trapped insects
The touch of insects on the sensory hairs activates calcium ion channels in cells at
the base of the hair to open, causing an influx in Ca2+ to generate action potential
Auxin increase triggered in hinge cells
H+ ions pumped into the cell walls and calcium pectate ‘glue’ in cell wall dissolved
Ca2+ ions enter hinge cell
Water follows by osmosis down its water potential gradient
Hinge cells expand
Trap lobes, flip from convex to concave (change in elastic tension)
Two types of plant growth regulators (hormones):
Auxins: influence many aspects of growth including elongation growth which
determines the overall length of roots and shoots; synthesised in the growing tips
(meristems) of shoots and roots, where cells are dividing; actively transported from
cell to cell
Gibberellins: involved in seed germination and controlling stem elongation
Role of auxin in cell elongation in plants:
Acid-growth hypothesis
Auxin stimulates proton pumps in the cell surface membrane
H+ pumped into the cell wall by active transport, hence the pH of cell wall
decreases, so pH-dependent enzymes activated (expansins) and loosen the bonds
between cellulose microfibrils
Cell wall ‘loosens’ / becomes more elastic / able to stretch, hence more water
enters the cell and turgor pressure increases, resulting to the expansion of the cell
wall
The role of gibberellin in the germination of wheat or barley:
Seed is initially dormant
When the seed absorbs water, embryo produces gibberellin
Gibberellin diffuses onto the aleurone layer and stimulate the cells to synthesise
amylase, by the affecting the gene transcription of mRNA for amylase (breakdown
of DELLA proteins which inhibit germination)
Amylase hydrolyses starch in the endosperm to soluble maltose molecules, which
are converted to glucose and transported to the embryo for respiration (ATP for
growth)
Amylase hydrolyses starch in the endosperm to soluble maltose molecules, which
are converted to glucose and transported to the embryo for respiration (ATP for
growth)
The height of some plants is partly controlled by their genes, e.g
tallness in pea plants is
affected by a gene with two alleles; if the dominant allele, Le, is present, the plants can
grow tall, but plants homozygous for the recessive allele, le, always remain short
The dominant allele of this gene regulates the synthesis of the last enzyme in a
pathway that produces an active form of gibberellin, GA1
Active gibberellin stimulates cell division and cell elongation in the stem, so causing
the plant to grow tall
A substitution mutation in this gene gives rise to a change from alanine to
threonine in the primary structure of the enzyme near its active site, producing a
non-functional enzyme; this mutation has given rise to the recessive allele, le;
hence homozygous plants, lele, are genetically dwarf as they do not have the active
form of gibberellin
Homologous chromosomes
are a pair of chromosomes in a diploid cell that have the same
structure as each other, with the same genes (but not necessarily the same alleles of those
genes) at the same loci, and that pair together to form a bivalent during the first division of
meiosis
There are 22
matching chromosomes in humans (homologous chromosomes) – autosomes – and a non-matching pair labelled X and Y (sex chromosomes); two sets of 23
chromosomes – one set of 23 from the father and one set of 23 from the mothe
A gene
is a length of DNA that codes for a particular protein or polypeptide
An allele
is a particular variety of a gene
A locus
is the position at which a particular gene is found on a particular chromosome; the
same gene is always found at the same locus
Diploid cell
one that possesses two complete sets of chromosomes; the abbreviation for
diploid is 2n
Haploid cell:
: one that possesses one complete set of chromosomes; the abbreviation for
haploid is n
Without halving the number of chromosomes into
haploid gametes (meiosis – reduction
division), it would double every generation
The formation of male gametes:
: spermatogenesis (testes)
The formation of female gametes:
: oogenesis (ovaries)
Sperm production takes place inside
tubules in the testes. Here, diploid cells divide
by mitosis to produce numerous diploid spermatogonia, which grow to form
diploid primary spermatocytes. The first division of meiosis then takes place,
forming two haploid secondary spermatocytes. The second division of meiosis then
produces haploid spermatids, which mature into spermatozoa.
Ovum production takes place inside the
ovaries, where diploid cells divide by
mitosis to produce many oogania which begins to divide by meiosis but stops at
prophase I, primary oocytes are formed. During puberty, some of the primary
oocytes proceed from prophase I to the end of the first meiotic division forming
two haploid cells (secondary oocyte – gets most of the cytoplasm – and polar body – has no role in reproduction)
The male gametes are nuclei inside
pollen grains, which are made in the anthers of a flower
The female gametes are nuclei inside
the embryo sacs, which are made in the
ovules inside the ovaries of a flower
Inside the anthers,
pollen mother cells divide by meiosis to form four haploid cells,
which nuclei divide by mitosis to form two haploid nuclei in each cell; matures into
pollen grains; one of the nuclei is the male gamete nucleus which can fuse with a
female nucleus to produce a diploid
zygote which grows into an embryo
plant
Inside each ovule,
a large, diploid spore mother cell develops, which divides by
meiosis to produce four haploid cells; all but one of these degenerates, which then
develops into an embryo sac, which grows larger and its haploid nucleus divides by
mitosis three times, forming eight haploid nucleus (one of these will become the
female gamete
Note that in plants, unlike animals,
e gametes are not formed directly by meiosis.
Instead, meiosis is used in the production of pollen grains and the embryo sac and
the gametes are then formed inside these structures by mitotic divisions
During prophase I of meiosis,
as the two homologous chromosomes lie side by side, their
chromatids form links called chiasmata (singular: chiasma) with each other. When they
move apart, a piece of chromatid from one chromosome may swap places with a piece
from the other – crossing over – resulting in each chromosome having different
combinations of alleles as it did before
Independent assortment.
At metaphase of meiosis I,
the pairs of homologous chromosomes line up on the
equator independently of each other. For two pairs of
chromosomes, there are two possible orientations; at
the end of meiosis II, each orientation gives two types
of gamete. There are therefore four types of gamete
altogethe
A genotype is
the alleles possessed by an organism
Homozygous means
having two identical alleles of a gene (e.g. HbAHbA)
Heterozygous means
having two different alleles of a gene (e.g. HbAHbS)
Genotype affects phenotype:
HbSHbS: coding for the production of the sickle cell -globin polypeptide, sickle cell
anaemia
HbAHbA: coding for the normal -globin polypeptide
HbAHbS: Half of the person’s Hb will be normal, and half will be sickle cell Hb - sickle
cell trait – can be referred to as ‘carriers’ – they have enough normal haemoglobin
to carry enough oxygen, and so will have no problems at all and immune to malaria
An organism’s phenotype is its
characteristics, often resulting from an interaction between
its genotype and its environment
During every fertilisation,
either an HbA sperm or an HbS sperm may fertilize either an HbA
egg or an HbS egg. The possible results can be shown like this:
Codominant alleles both have
an
effect on the phenotype of a
heterozygous organism
A dominant allele is
one whose
effect on the phenotype of a
heterozygote is identical to its effect in a homozygote
A recessive allele is
one that is only expressed when no dominant allele is present
Dominant and recessive example (tomato plants):
The F1 generation
is the offspring resulting from a cross between an organism with a
homozygous dominant genotype, and one with a homozygous recessive genotyp
The F2 generation
is the offspring resulting from a cross between two F1 (heterozygous(
organisms
A test cross is a
genetic cross in which an organism showing a characteristic caused by a
dominant allele is crossed with an organism that is homozygous recessive; the phenotypes
of the offspring can be a guide to whether the first organism is homozygous or
heterozygous:
E.g. a purple stem tomato plant might have the genotype AA or Aa; to find out its
genotype, it could be crossed with a green-stemmed tomato plant aa
XX:
female
XY
malewhere Y chromosome
is much shorter than the X
Sex linkage.
E.g. haemophilia (sex-linked gene), in which the blood fails to clot properly
due to the recessive allele h, resulting to the lack of factor VIII; where dominant allele, H,
produces normal factor VIII
The gene for haemophilia is on the
X chromosome, and not on the autosome, hence affects
the way that is inherited, e.g. a man does not have haemophilia while the woman is a
carrier (0.25 probability: normal girl, boy, carrier girl and boy with haemophilia):
Dihybrid crosses
(inheritance of two genes at once
dihybrid cross between
a heterozygous organism and a
homozygous recessive organism where the
alleles show complete dominance
1 : 1 : 1 : 1 ratio
dihybrid cross between two heterozygous
organisms where the two alleles show
complete dominance and where the genes
are on different chromosomes
9 : 3 : 3 : 1 ratio
Linkage
is the presence of two genes on the same chromosome, so that they tend to be
inherited together and do not assort independently (e.g. the fruit fly, Drosophila. The gene
for body colour and the gene for antennal shape are close together on the same
chromosome and so are linked)
Recombinant (offspring caused by crossing over):
Cross over value is the percentage of offspring that belong to the recombinant class
Chi-squared (χ2) test
allows comparison between observed results and expected results,
and decide whether there is a significant difference between them (e.g. two heterozygous
tomato plants – 144 offspring):
Gene mutation:
a change in the structure of a DNA molecule, producing a different allele
of a gene
Mutagen
a substance that increases the chances of mutation occurring
Three different ways in which the sequence of bases in a gene may be altered (gene
mutations):
Base substitution, where one base takes the place of another, e.g. CCT GAG GAG
into CCT GTG GAG
Base addition, where one or more extra bases are added to the sequence, e.g. CCT
GAG GAG into CCA TGA GGA G
Base deletion, where one or more bases are lost from the sequence, e.g. CCT GAG
GAG into CCG AGG AG
Base deletion and addition have significant effect on
the structure, therefore function of
the polypeptide that the allele codes for, and causes frame shifts
Base substitution may not have
any apparent effect, called silent mutation
Sickle cell anaemia:
Huntington’s disease:
Albinism:
Genetic variation is caused by:
Independent assortment of chromosomes, and therefore alleles, during meiosis
Crossing over between chromatids of homologous chromosomes during meiosis
Random mating between organisms within a species
Random fertilisation of gametes
Mutation (excluding somatic cells – apart of cells in the reproductive organs
Genetic variation provides the
raw material on which natural selection can act, where
some individual have features that give them an advantage over other members in a
population
Phenotypic variation is also caused by
the environment, e.g. some organisms might be
larger than others due to better access of quality food while they were growing, however
these variations will not be passed onto the offsprin
Qualitative differences fall into
learly distinguishable categories, with no intermediates –
e.g. four possible ABO blood groups: A, B, AB or O. This is discontinuous variatio
Quantitative differences where there is a
range of heights between two extremes (Figure
17.2). This is continuous variation
Both qualitative and quantitative differences in phenotype may be inherited; may involve
several different genes; differences between them are:
In discontinuous (qualitative) variation:
Different alleles at a single gene locus have large effects on the phenotype
Different genes have quite different effects on the phenotype
In continuous (quantitative) variation (e.g. organism’s height):
Different alleles at a single gene locus have small effects on the phenotype
Different genes have the same, often additive, effect on the phenotype
A large number of genes may have a combined effect on a particular
phenotypic trait; these genes are known as
polygenes
Environmental effects may allow the full genetic potential height to be reached or may
stunt it in some way:
One individual might have less food, or less nutritious food, than another with the
same genetic contribution
A plant may be in a lower light intensity or in soil with fewer nutrients than another
with the same genetic potential height.
Himalayan colouring of rabbits and of Siamese and Burmese cats, colouring is
caused by an allele which allows the formation of the dark pigment only at low
temperature, hence the extremities are the coldest parts of the animals
The t-test is used to
assess whether or not the means of two sets of data with roughly
normal distributions, are significantly different from one another (p. 500)
Various environmental factors come into play to keep down a population’s number
Biotic – caused by other living organisms such as through predation, competition
for food, or infection by pathogens
Abiotic – caused by non-living components of the environment such as water
supply or nutrient levels in the soil
Once the population increases,
the pressure of the environmental factors will be
sufficiently great, then the population size will decrease, only when they have fallen
considerably will the numbers be able to grow again; over a period of time, the population
will oscillate about a mean level
Natural selection occurs as
populations have the capacity to produce many offspring that
compete for resources; in the ‘struggle for existence’ only the individuals that are best
adapted survive to breed and pass on their alleles to the next generation (selection
pressure)
Fitness
is the capacity of an organism to survive and transmit its genotype to its offspring
Selection pressure
an environmental factor that gives greater chances of survival and
reproduction on some individuals than on others in a population (e.g. predation and
camouflage)
Environmental factors can act as:
Changes in allele frequency creates the
basis of evolution
Antibiotic resistance:
There may be one or more individual bacteria with an allele giving resistance to
penicillin – such as Staphylococcus – by producing penicillinase, which inactivates
penicillin. These bacteria can survive and reproduce, while others will die (selection
pressure)
Industrial melanism
Black forms of moth with allele, C, increases in areas near industrial cities; whereas
speckled forms of moth with allele, c, stays constant in non-industrial areas
(predation selection pressure)
These mutations are not caused by pollution (changes in environmental factors only
affect the likelihood of an allele surviving in a population; not affecting the
likelihood of such an allele arising by mutation
Sickle cell anaemia:
Places where sickle cell allele is most common are parts of the world where malaria
(caused by protoctist parasite, Plasmodium, where it enters the RBC and multiply) is
found (selection pressure occurs hence selective advantage occurs)
There are two strong selection pressures acting on these two allele:
Selection against people who are homozygous for the sickle cell allele,
HbSHbS, is very strong, because they become seriously anaemic
Selection against people, who are homozygous HbAHbA is also very strong,
as they are more likely to die from malaria
Heterozygous people with malaria only have about one-third the number of
Plasmodium in their blood as do HbAHbA homozygotes
Genetic drift
s a change in allele frequency that occurs by chance, as only some of the
organisms of each generation reproduce (e.g. when a small number of individuals are
separated (isolated) from the rest of a large population, resulting to different allele
frequencies; further genetic drift will alter the allele frequencies even more and evolution
will cause significant difference with the parent population) – founder effect
Hardy-Weinberg principle
allow the proportions of each of the genotypes in a large,
randomly mating population to be calculated (the frequency of a genotype is its proportion
to the total population; p represents the frequency of the dominant allele & q represents
the frequency of the recessive allele):
E.g. two alleles of a single gene, A/a, thus three genotypes will be in the population
Hardy-Weinberg calculations do not apply when the population is small or when
there is:
Significant selective pressure against one of the genotypes
Migration of individuals carrying one of hte two alleles into, or out of, the
population
Non-random mating
Selective breeding of dairy cattle:
Artificial selection: When humans purposely apply selection pressures to
populations
Desired features include docility (making the animal easier to control), fast growth
rates and high milk yields have been achieved by selective breeding
Individuals showing one or more of these desired features are chosen for breeding
Some of the alleles granting these features are passed on to the individuals’
offspring
Over many generations, alleles granting the desired characteristics increase in
frequency, while those conferring characteristics not desired by the breeder
decrease in frequency
Background genes (the alleles of genes that adapt to its particular environment)
results in offspring obtaining the same adaptations, however will not be well
adapted to a new environment (even though it will show selected traits)
Crop improvement:
Gene technology is used to alter or add genes into a species in order to change it
characteristics
Selective breeding:
Produced many different varieties of wheat and rice – most is grown to
produce grains rich in gluten
Resistance towards various diseases (wheat and rice)
Shorter stems, for easy harvest hence higher yields (less energy used to
grow tall, more to growing of seeds) – wheat and rice
Most of the dwarf varieties of wheat carry mutant alleles of two reduced height
(Rht) genes, which code for DELLA proteins to reduce the effect of gibberellins ongrowth. The mutant alleles cause dwarfism by producing more of, or more active
forms of, these transcription inhibitors
A mutant allele of a different gene, called ‘Tom Thumb’, has its dwarfing effect
because the plant cells do not have receptors for gibberellins and so cannot
respond to the hormone
Interbreeding and hybridisation of maize for uniformity and heterozygosity:
If maize plants are inbred (crossed with other plants with genotypes like
their own), the plants in each generation become progressively smaller and
weaker – inbreeding depression – due to the less vigorous homozygous
plants compared to heterozygous
Homozygous plants obtained from companies, then crossing them,
producing F1 plants that all have the same genotype which have
characteristics such as high yields, resistance to more pests and diseases,
and good growth in nutrient-poor soils or where water is in short supply
Speciation
: The production of new species
A species
is a group of organisms with similar morphological, physiological, biochemical
and behavioural features, which can breed together naturally to produce fertile offspring,
and are reproductively isolated from other species
Reproductive isolation:
The inability of two groups of organisms of the same species to
breed with one another, e.g. because of geographical separation or because of behavioural
differences
Reproductive isolation can take very different forms:
pre zygotic and postzygotic
Prezygotic (before a zygote is formed) isolating mechanisms include:
Individuals not recognising one another as potential mates or not responding to
mating behaviour
Animals being physically unable to mate
Incompatibility of pollen and stigma in plants
Inability of a male gamete to fuse with a female gamete
Postzygotic isolating mechanisms include:
Failure of cell division in the zygote
Non-viable offspring (offspring that soon die)
Viable, but sterile offspring
Allopatric speciation (geographical isolation/separation):
Requires a barrier to arise between two populations of the same species,
preventing them from mixing (e.g. a stretch of water, deforestation)
The selection pressures on these two places might be very different, resulting in
different alleles being selected for
Over time, the two population can no longer interbreed, hence a new species had
evolved
Sympatric speciation (ecological and behavioural separation):
Two groups of individuals living in the same area may become unable to breed
together (e.g. one group develops courtship behaviours that no longer match with
the other groups, because they love in different habitats in the same area
(ecological separation))
Molecular evidence that reveals similarities between closely related organisms with
reference to mitochondrial DNA and protein sequence data:
Mitochondria contain a single DNA molecule that is passed on down the female
line; analysis of mitochondrial DNA (mtDNA) can be used to determine how closely related two different species are; the more similar the sequence of bases in the
DNA, the more closely related they are considered to be
Amino acid sequences in proteins can be used (the protein cytochrome c, involved
in the electron transport chain, is found in a very wide range of different organisms,
suggesting that they all evolved from a common ancestor, where differences in the
amino acid sequences in cytochrome c suggest how closely related particular
species are
Extinctions tend to be caused by:
Climate change, for example, global warming can result in some species inability to
find adapted habitats
Competition, for example, a newly evolved species or an alien species, may out
compete a resident species
Habitat loss, for example, large deforestations
Direct killing by humans
Structural genes:
Genes that code for proteins required by a cell
Regulatory genes:
Genes that code for proteins that regulate the expression of other genes
Difference between repressible and inducible enzymes
The synthesis of a repressible enzyme can be prevented by binding a repressor
protein to a specific site, called an operator, on bacterium’s DNA
The synthesis of an inducible enzyme occurs only when its substrate is present
(transcription of a gene occurs as a result of the inducer (enzyme’s substrate)
interacting with the protein produced by the regulatory gene)
The lac operon consists of a cluster of three structural genes and a length of DNA
including operator and promoter regions, the three structural genes are
lacZ, coding for -galactosidase
lacY, coding for permease (allows lactose to enter the cell)
lacA, coding for transacetylase
When there is no lactose in the medium in which the bacterium is growing:
The regulatory gene codes for a protein called a repressor
The repressor binds to the operator region, close to gene lacZ
In the presence of bound repressor at the operator, RNA polymerase cannot
bind to DNA at the promoter region
No transcription of the three structural genes take place
The repressor protein is
allosteric (two binding sites), hence when lactose binds to
its site, the shape of the protein changes so that the DNA-binding site is closed
When lactose is present in the medium in which the bacterium is growing:
Lactose is taken up by the bacterium
Lactose binds to the repressor protein, distorting its shape and preventing it
from binding to DNA at the operator site
Transcription is no longer inhibited and messenger RNA is produced from
the three structural genes
-galactosidase is an inducible enzyme
Transcription of a gene is controlled by transcription factors
proteins that bind to
a specific DNA sequence and control the flow of information from DNA to RNA by
controlling the formation of mRNA, role is to make sure that genes are expressed in
the correct cell at the correct time and to the correct extend
effects of mrna
Necessary for transcription to occur, form part of the protein complex that
binds to the promoter region of the gene concerned
Activate appropriate genes in sequence
Responsible for the determination of sex in mammals
Allow responses to environmental stimuli, e.g. switching on the correct
genes to respond to high environmental temperatures
Hormones have their effect through transcription factors
Gibberellin controls seed germination in plants by
increasing the transcription of
mRNA coding for amylase, done by breaking down of DELLA proteins (inhibits the
binding of a transcription factor, such as PIF to a gene promoter), causing PIF to
bind to its target promoter resulting to an increase in amylase production