Midterm #1 Material Flashcards
Define Microbiology
Study of microscopic agents
- 95% of microbes do NOT cause disease
What are the two kinds of acellular microbial agents? (non-cellular, lack cell features)
- Prions
2. Viruses
What is a prion?
Infectious proteins with no genetic material
What is a virus?
Obligate intracellular parasite (cannot replicate without a host) with either RNA or DNA as genome
What are the two main categories of cellular microbial agents?
- Prokaryotes
2. Eukaryotes
What is a defining feature of prokaryotes? What is an example?
They lack membrane-bound organelles.
Ex - bacteria
What is the defining characteristic of eukaryotes?
“True” cells - have typical cellular features such as nucleus, and organelles
What are the two different kinds of prokaryotes?
- Gram positive (stain purple) - MRSA, E-coli
2. Gram negative (stain pink)
What are the three different kinds of eukaryotes?
- Fungi
- Protozoa
- Other parasites (multi-cellular and typically larger
Are fungi single-celled or multi-celled?
Both!
Yeasts are single-celled
Molds are multi-celled
What is the defining characteristic of protozoa?
Unicellular
single celled organism
What happens when we are exposed to PrPsc?
PrPsc = abnormal forms (infectious) prions
- they change our normal prions to abnormal prions
What do abnormal prions due to the brain tissue?
Causes plagues or holes to form in the brain tissue
What is TSE?
Transmissible Spongiform Encephalopathy
- prion disease
- fatal, incurable
What is an example of a prion disease in sheep and in cows?
Sheep = Scrapie Cattle = Bovine Spongiform Encephalopathy (BSE) "Mad Cow Disease"
What are the different kinds of prion diseases in humans?
- Creutzfeldt-Jakob Disease (CJD - 2 kinds; classic and variant)
- Kuru Disease
- Fatal Familial Insomnia
What is the difference between classic and variant CJD?
Classic = genetic predisposition to it Variant = from eating cattle that are infected
What is the median duration of illness?
Time the patient will remain alive after diagnosis
What is the median age at death, median duration of illness and clinical signs and symptoms of Classic CJD?
Median age at death = 68
Median duration = 4-5 month
S and S = dementia, early neurologic signs
What is the median age at death, median duration of illness and clinical signs and symptoms of Variant CJD?
Median age at death = 28
Median duration = 13-14 months
S and S = Psychiatric/behavioural symptoms, painful sense of touch, delayed neurological signs
What does obligate intracellular parasite mean?
Must be inside a suitable living host cell in order to propagate - highly specific virus-host cell relationship
What does MERS-cov stand for?
Middle East Respiratory Syndrome Coronavirus
When was the first identified case of MERS-cov?
April 2012 in Saudi Arabia
What are signs and symptoms of MERS-cov?
- fever, cough, SOB, breathing difficulties
- pneumonia
- gastrointestinal symptoms (diarrhea)
What does SARS stand for?
Sever Acute Respiratory Syndrome
What is the mode of transmission of MERS-cov and SARS?
Droplet (coughing/sneezing)
What is an incubation period?
Time between exposure to disease and when you show symptoms
What is Period of Communicability?
Time during which an infectious agent can be transmitted directly or indirectly from an infected person to another person
What is the incubation period of SARS? MERS?
SARS = 2-10 days MERS = 2-14 days
What is the period of communicability of SARS? MERS?
SARS =
Which has a higher fatality rate, MERS or SARS?
MERS (36%) compared to SARS (10.8)
Why will the estimated number of infected people always be a little low?
Because there will always be some infected people that don’t go the hospital b/c the symptoms weren’t that bad (to warrant hospitalization)
How is Ebola spread?
By direct contact with body fluids (blood) of a SYMPTOMATIC infected person (or one who has died from the disease)
What is the incubation period (IP) of Ebola?
8-10 days
What is the fatality rate of Ebola?
25-90%
What are some signs and symptoms for Ebola?
Fever, severe headache, fatigue, muscle pain, followed by diarrhea, vomiting, abdominal pain and unexplained hemorrhage
How can an individual help to minimize the spread of Ebola?
- wash hands (soap and water)
- do NOT touch an infected person OR their body fluids
What are the 4 ways that Zika virus can be spread?
- Mosquito bites
- Sexual contact
- Congential transmission (infected mother to fetus)
- Blood transfusion and laboratory exposure
What happens to the body when it is infected with the Zika virus?
Virus attacks the brain cells, there is then not enough pressure on the developing skull - results in skull collapse (microcephaly)
What two types of mosquitoes spread the Zika virus? Why is it not a concern in Canada?
- Aedes aegypti
- Aedes albopictus
Those species don’t live in Canada
When do the species of mosquitoes that carry Zika virus feed? West nile virus?
Zika = Daytime
West Nile = Dusk to Dawn
What is the name of the mosquitoes species that carries the West Nile virus?
Culex
- we have these in Canada!
What are some signs and symptoms of Zika virus?
Fever, rash, joint pain, conjunctivitis, muscle pain and maybe headache
What are the current challenges of the Zika virus (3)?
- incubation period is unknown
- when and how it is passed from mother to fetus is unknown
- no FDA approved commercially diagnostic test
What are the two most common causes of healthcare associated infections?
- Gram-positive (C. diff, MRSA, VRE)
2. Gram-negative (E.coli)
What are the two types of fungi (eukaryotes)?
- Yeasts (unicellular)
2. Molds (multicellular)
What is toxoplama?
Single-celled eukaryotes
- spread by contact with cats/cat litter
- consumption of raw/undercooked meat from infected animals
- ingestion of contaminated water
- infected mother to fetus
What group/class do parasitic worms fall into?
Eukaryotes, multicellular
What are three different kinds of parasitic worms?
- Taeniasis (tapeworm)
- Anisakiasis (from eating raw fish)
- Snail/Brazilian fever - contact with contaminated water
What is the mode of transmission?
How the disease is transmitted
What is the portal of entry?
How the disease infects the new host
What is the portal of exit?
How the disease leaves the infected individual
What is epidemiology?
Study of the distribution of a disease
(or an event [what], and their determinants [how], in a given population [who] and location [where] during a defined period [when])
What is Dr. John Snow (Father of Epidemiology) credited with?
Discovered the source of cholera outbreak in London in 1854 was WATER
What is GIS and how does it help with epidemiology?
Geographic Information System
- used to help investigate outbreak and prepare for outbreak management
Define communicable or infectious diseases
Illnesses caused by an infectious agent and/or its toxin that can be transmitted directly and/or indirectly from human-human or animal-human
What is the only disease that we were able to eradicate worldwide through vaccination?
Smallpox!
What is the name for diseases that are transferable from animals to humans?
Zoonotic diseases
- rabies, avian flu, lyme disease, west nile virus
What are the three possible outcomes after getting exposed to a disease?
- No illness
- Colonization
- Carrier state
- Illness (with mild to severe s and s)
What does it mean if you are colonized with a disease?
Presence and multiplication of microbes in a host without tissue invasion/damage
- symptomatic transmission
What does it mean if you are in a carrier state?
You have the disease (but do not show signs and symptoms) and can transmit the disease AT ANY TIME
- asymptomatic transmission
What is the incubation period?
Time between exposure to an infectious agent and the appearance of first signs and symptoms
What is the prodromal period?
Early stage of signs and symptoms
What is the period of invasion?
Worsening of signs and symptoms, reaching the height of infection (possibly death)
What is the convalescent period?
Signs and symptoms diminish and disappear eventually (recovery)
What are the 4 clinical stages of infectious disease?
- Incubation period
- Prodromal period
- Period of invasion
- Convalescent period
When is a person contagious?
During the period of communicability
Define communicability
The number of people an infected person can infect in a large susceptible population [Ro]
What does it mean if Ro is > 1? And
The greater the Ro, the more contagious the disease
-
What is the basic reproductive number?
The Ro
Why is the Ro number important?
- helps predict how fast and far a disease can spread
- help to estimate morbidity and mortality
- helps with resource allocation
What is the incidence of disease?
Number of NEW cases in a given time period
What is the prevalence of a disease?
All cases in a given time period (OLD + NEW cases)
What is the tip of the iceberg effect?
Many people could be infected but don’t show any signs or symptoms
When comparing the incidence and prevalence of HIV, why are the numbers different?
Prevalence is a higher number b/c people living with HIV are living LONGER (effective drug treatments)
What is disease surveillance?
Systematic approach to collect, analyze, interpret and disseminate disease data to all stakeholders in a timely fashion
What are the two categories for reportable diseases?
- Schedule A: reportable by ALL SOURCES (dr, RN, labs, public)
- Schedule B: reportable by LAB ONLY
What is prevalence data NOT useful for?
Detecting outbreaks and identifying determinants of disease
Define sporadic occurance
Randomly occurring cases of disease - not related epidemiologically
Define endemic
Cases of disease persistent in a given location in a relatively stable fashion (Lyme disease)
Define epidemic
Incidence exceeds the historical number (mean) of cases (ex. seasonal flu epidemic)
Define pandemic
World-wide or global epidemic (H1N1)
What are healthcare-associated infections (HAIs)?
Infects that occurs during or after hospitalization or stay in a health-care insitutution
- 48 hours after hospital admission
- up to 3 days after discharge
- up to 30 after an operation
What is CA-MRSA?
What is HA-MRSA?
CA = community acquired HA = Heathcare acquired
What age group does CA-MRSA affect? HA-MRSA?
CA = teenagers and younger adults HA = older age groups (50+, 80+)
What are some common types of HAIs?
- UTI (catheter-associated) (30-40%)
- Lower respiratory tract infections (10-20%)
- Surgical site infections (15-25%)
- Blood (central line-associated blood stream infections) (5-15%)
What is cystitis?
What drug is used?
A bladder infection
- Nitrofurantoin (resistance is uncommon)
What is pyeleonephritis?
What drug is used?
Kidney infection
- IV ceftriaxone
What are carbapenems?
ESBLs
(extended spectrum beta lactamases
What is an SSI?
Surgical site infection
What are the classifications of SSIs?
- Incisional
- Superficial
- Deep - Organ/space
What does a superficial surgical site infection involve?
Involves only skin and subcutaneous tissue
What does a deep surgical site infection involve?
Involves deep soft tissues (fascia and muscle)
What does an organ/space surgical site infection involve?
Involves any part of anatomy other than incision opened or manipulated
What is septicemia?
Bloodstream infections
What is primary septicemia?
Direct introduction of microbes into blood (from patient themselves, HCWs, or through central lines)
What is secondary septicemia?
The spread of microbes from a pre-existing distant infection
What are the clinical signs and symptoms of SSIs (surgical site infections)?
- Febrile
- Redness (Erythema)
- Swelling
- Warm
- Tender/pain
- Drainage?
Approximately how many patients will acquire an HAI?
5-10%
= > 200,000 cases per year
= > 8,000 deaths per year
What are the direct costs of HAIs?
Associated with providing care to patients (estimated to be $1 billion
What are the indirect costs of HAIs?
- Loss of productivity (someone calls in sick)
- Loss of business income
- Lawsuits (medical malpractice)
Which disease had the biggest economic impact of HAIs?
SARS
- $30-50 billion USD
What is an agent?
The cause of an infectious disease (microbial toxins, bacteria, viruses, fungi, protozoa, parasites, prions)
What is a host?
A living organism that harbours an infectious agent
What is the definition of environment (pertaining to the epidemiological triangle)?
Settings external to the host that allows for transmission of the agent
Why can an agent survive in a host?
Because the host allows for the sustained survival of the infectious agent that resides in/on its body UNDER NATURAL CONDITIONS (not produced in a lab)
True or false:
The infectious agent may or may not produce a disease in the host but is provided opportunities for transmission
TRUE
What are the three types of relationships that humans can have with microbes?
- Mutualistic
- Commensal
- Parasitic
What is a mutualistic relationship?
Benefits both parties
What is a commensal relationship?
No harm but not benefit either
What is a parasitic relationship?
Infectious agent benefits; host is harmed
What are normal microbiota?
Agents that permanently live in the human body
What are transient microbiota?
Agents that may inhabit and reproduce in a host briefy, but the hosts natural defenses do not allow them to become permanent
What are some of the benefits of normal microbiota?
- aid in development and maturation of host immune system
- protect host from pathogens (via competition or production of antimicrobial substances)
What is the potential harm of normal microbiota?
If the host becomes immunocompromised, they could become opportunistic pathogens
What is an opportunistic pathogen?
Pathogens that take advantage of a weaker host (in normal conditions they would not cause problems)
What is an obligate pathogen?
Agents that always cause disease/damage in the host in order to be transmitted
What is a primary immunodeficiency?
Person is born with a genetic defect in the immune system (genetic susceptibility)
What is a secondary immunodeficiency?
An acquired susceptibility (AIDS & TB)
What are 3 examples of medical conditions that cause secondary immunodeficiencies?
Cancer, cystic fibrosis, co-morbidities (diabetes and obesity)
What are 3 examples of medical therapies that cause secondary immunodeficiencies?
- Anti-inflammatory agents
- Anti-rejection drugs (transplant patients)
- Oncology interventions (radiation and chemotherapy)
What are some examples of factors that affect the host’s immune system (making them more susceptible to acquired immunodeficiencies)? Why?
- Chronic stress
- Lifestyle habits (alcohol, smoking, drugs)
- Age
- Sex (differences in anatomy, hormones, pregnancy, etc)
Why do chronic stress, lifestyle habits, age, sex, and malnutirion affect the host’s susceptibility to acquired immunodeficiencies?
Impairs the amount and/or functions of cells and chemical messengers associated with inflammatory and immune responses
Why is breastfeeding good for a child? What happens to the antibodies that the mother give to the child?
Mother shares antibodies in utero with the fetus.
Neonates receive some protection from breastfeeding
- but it doesn’t last forever (they are MOM’s antibodies, not the CHILD’s, so the child will actually attack them - they are foreign bodies)
Why does the mother not reject her baby as a foreign thing?
Mother’s are immunosuppressed (to a degree)
What are MORE factors that influence a host’s risk of infection?
- socioeconomic status
- occupational exposure
- travel history
- person hygiene
- vaccination
- exercise/physical activity
- risk activities (needle sharing)
What are MORE factors that influence a host’s risk of a HAIs?
- invasive dwelling devices
- lengthy instrumentation and/or surgery
- long stay in healthcare facility
- prior and prolonged use of antimicrobials
- presence of existing wounds
What are 6 different kinds of agents?
- Bacteria
- Viruses
- Protozoa
- Fungi
- Parasite and prions
- Microbial toxins
Define communicability
Ease of transmission of the agent
What are 3 agent factors that influence the risk of infection?
- Communicability
- Survivability
- Adaptability
What is the formula for communicability?
Ro = C * P * D
C = number of contacts P = probability of transmission per contact D = Duration of infectiousness (POC)
Define the infectious dose (ID)
Minimum number/dose of agents required to cause an infection
- infection will occur if exposure exceeds infective dose
Define survivability
How well an agent survives on a surface
What happens if a person comes into contact with a disease that is over the clinical infection threshold?
Person will acquire the disease
What happens if a person comes into contact with a disease that is over the subclinical infection threshold?
Exposure level still exceeds infective dose; person will have mild or no s/s
Which agents have the highest survivability? The lowest?
Highest/best = prions Lowest/worst = viruses with lipid envelopes
What is the virulence factor?
Intrinsic characteristics of an agent that enable them to cause tissue damage/disease
What are 2 pieces of the virulence factor?
- Ability to evade and/or subvert the host’s defenses
2. Survival in the host (longer period of communicability = greater chance of transmission)
How does an agent adapt to or in the host’s environment?
- Mutation
2. Genetic exchange
Define direct transmission
Transmission from infected host to another
Define indirect transmission with intermediate hosts and adaptation
Agent may adapt and become more efficient
- adapt to different host species
What is reassortment?
A mutant strain of the agent
- avian flu and the human flu strains mix with a mutation
- we ALL lack immunity!
- if it has aspects of the human flu strain, it will be more successful at human-human transmission
What are factors that affect the virulence of an agent?
- Adherence/attachment
- Toxigenicity
- Invasiveness
- Evasion/subversion of host defenses
- Immunopathology
Define toxigenicity
Ability to produce toxins
- endotoxins or enterotoxins
Define immunopathology
Sometimes the immune response is too strong and causes damage to the host from itself
What is a micro-environment?
Where the agent is located
What is the macro-environment?
Where the host is located
What are 5 micro-environmental factors that influence how well an agent survives, grows and transmits?
- Oxygen
- Water
- Temperature
- pH
- Nutrients
What is an obligate aerobe?
Needs oxygen
- will die without it
- neutralizes toxic forms of oxygen
What is an example of an obligate aerobe?
Mycobacterium
What is a facultative anaerobe?
Increased growth in the presence of oxygen
- both aerobic and anaerobic
What is an example of a facultative anaerobe?
- Streptococcus
- Staphylococcus
- Enterobacericeae
- MRSA
- VRE
What is an obligate anaerobe?
Can only survive is oxygen is absent
- will die in the presence of O2
What is an example of an obligate anaerobe?
Clostridum
What is an aerotolerant anerobe?
Does not care if oxygen is present or not
- does NOT use O2
What is an example of an aerotolerant anaerobe?
Lactobacillus
What is a microaerophil?
Requires low concentrations of oxygen for growth
What is an example of a microaerophile?
Neisseria gonorrhoeae
What are capnophiles?
Agents that prefer high concentrations of CO2
What temperatures do psychrophiles prefer?
Cooler temperatures - freezing will not kill them, only slow their growth
What temperatures do thermophiles prefer?
Extremely high temperatures
What temperatures do mesophiles prefer?
30-40 degrees C
= HUMAN BODY temperatures!
If a container of food in the fridge contained Clostridium Botulinum, where in the container would they be found?
AT THE BOTTOM
- obligate anerobic
(further away from oxygen source)
True or False:
The optimum pH range for an agent is high
False:
The optimum pH range for an agent is quite narrow
What pH range are infectious agents typically? What are they called?
pH 5.5-8
Neutrophiles
What is the name for agents that prefer acidic environments?
Acidophiles
What is the name for agents that prefer basic environments?
Alkalophiles
Do fungi or bacteria prefer a more acidic environment?
Fungi prefer a more acidic environment
What does a low Aw value mean?
The agent can survive WITHOUT a lot of water
What is the water activity level (Aw)?
Amount of water available in a micro-environment (such as food)
What can you add to food to lower the Aw value?
Salt or sugar
Dry it!
What happens to bacteria in a hypertonic environment?
Water will leak out of the bacteria and into the solution (to try to dilute it)
- plasmolysis
What are the 6 essential nutrients?
Carbon Nitrogen Hydrogen Sulfur Phosphate Minerals
Define heterotroph
Organism that needs to eat or absorb their energy source
Define chemoheterotroph
Organism that uses the metabolic conversion of the nutrients from other organisms for energy
Define autotroph
Organism that makes it’s own food
- Photoautotroph
- Chemoautotroph
What are some macro-environmental factors that influence infectious disease transmission?
- poor sanitation
- overcrowding
- construction activities
- contaminated air
How can staffing affect infectious disease transmission?
- inadequate staffing
- inexperienced staff
- indifferent attitude
- knowledge deficit
- failure to identify cases
What are the 6 steps in the chain of transmission?
- Infectious agent
- Reservoir
- Portal of exit
- Mode of transmission
- Portal of entry
- Susceptible host
What is a microbial reservoir?
A living or non-living object that permits sustained survival and transmission of an infectious agent
How is a secondary reservoir different from a primary reservoir?
Secondary doesn’t support replication
What are the three types of carriers?
- Incubatory
- Convalescent
- Healthy
What does it mean if the source of infection is endogenous?
Patient themselves (self-infection) is the source of infection
What does it mean if the source of infection is exogenous?
Living reservoirs: (OTHER patients), health care workers or Non-living reservoirs: air, water, food, catheter, IV fluids, ventilators
What are the two main modes of transmission?
- Direct (transmitted by direct contact between reservoir and host)
- Indirect (transmitted to host via intervening agent)
What are the 5 categories of modes of transmission?
- Air-borne
- Droplet spread
- Direct contact
- Indirect contact
- Common vehicle
What is vertical transmission?
Transmission from mom to baby
- trans-placental
- intrauterine transmission
- infected birth canal
What is horizontal transmission?
Transmission from person to person
What are examples of viral diseases that are transmitted through direct implantation or biting?
Rabies Bloodborne virses (hepatitis B and B, HIV)
What are example of bacterial diseases that are transmitted through direct implantation or biting?
Tetanus (Clostridium tetani) Capnocytophaga canimorsus (found in dog's mouths)
What are examples of diseases that are spread through direct droplet transmission?
- SARS
- Influenza
- Measles
- Mumps
- Rubella
- Common cold
- Meningitis
How is airborne transmission different than droplet transmission?
Airborne = smaller droplets (1-5 micro meters in diameter)
- can stay suspended in air indefinitely
- agents remain viable and infectious for an extensive period of time
What is an example of a disease that is an airborne transmissions?
- TB (mycobacterium tuberculosis)
- Legionnaire’s disease
What is a vector?
Living organisms that transmit an infectious agent to a host
Vectors are normally, what kind of living thing?
Arthropods (mosquitoes, ticks)
What are the two kinds of vectors?
- Biological
2. Mechanical
What is a biological vector?
An organism which not only transports a pathogen, but also plays a role in the life cycle of the pathogen
What is a mechanical vector?
An organism which ONLY transports a pathogen
True or False:
Biological vectors are reservoirs and hence can be considered a mode of direct transmission
TRUE!
- because they can survive, live, and multiply in a BIOLOGICAL vector
True or False:
Non-living objects do not act as an intermediary for indirect transmission
FALSE!
Non-living object DO act as an intermediary for indirect transmission
What is a common vehicle?
Infects multiple hosts (ex. food and water during an outbreak)
What is a fomite?
Non-living objects that can act as intermediaries for indirect transmission
What does the route of transmission often refer to?
Portal of entry (ingestion route) but sometimes can include both portals of entry AND EXIT (fecal-oral route)
What are the portals of exit and entry?
Body parts/substances through which infectious agents leave and enter the body respectively
What are some common portals of entry?
- mucous membrane
- conjunctiva
- respiratory tract
- gastrointestinal tract
- genitourinary tract
- skin
What is the parenteral route?
Through punctures, injections, bites, cuts, wounds, and surgical incisions
What does IPCT stand for?
Infection Prevention and Control Team
What are the roles and responsibilities of IPCT?
To develop, implement, and monitor the effectiveness of IPC policies and procedures by:
- establishing guidelines
- providing advice
- auditing
What is the main objective in contact tracing?
To identify those who have come into direct contact with person(s) who have a highly contagious and/or dead infectious disease
- to prevent further spread of the infection
- to provide required interventions
What is mupirocin (Bactroban)
Antibiotic used for intranasal decolonization
What is cholorhexidine gluconate?
Antiseptic for bathing patients
What is photo-disinfection?
Use non-thermal light energy to decolonize nasal carriage