1
Q

What are the two antimicrobial agents?

A

➝ Antibiotics target bacteria

➝ Antivirals target viruses

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2
Q

Why do we need antivirals?

A

➝ for quick killer viruses

➝ slow progressive chronic diseases

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3
Q

What are the slow progressive viruses that lead to cancer?

A

➝ Hep B
➝ Hep C
➝ HPV
➝ HIV

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4
Q

What are the 5 uses of antivirals?

A
➝  Treatment of acute infection
➝  Treatment of chronic infection
➝  Post-exposure prophylaxis
➝  Pre-exposure prophylaxis
➝  Prophylaxis for reactivated infection
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5
Q

What are three viruses causing acute infection that antivirals can be used for?

A

➝ Influenza
➝ Chickenpox
➝ Herpes

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6
Q

What are three viruses that cause chronic infection that antivirals can be used for?

A

➝ HCV
➝ HBV
➝ HIV

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7
Q

When do you use antivirals prophylactically?

A

➝ post exposure HIV

➝ pre exposure HIV

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8
Q

When do you use antivirals prophylactically for a reactivated infection?

A

➝ transplantation

➝ CMV

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9
Q

Why does selective toxicity work?

A

➝ Due to differences in the structure and metabolic pathways between the host and the pathogen

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10
Q

Where should the target for selective toxicity ideally be?

A

➝ inside the pathogen

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11
Q

What are the 6 reasons that it is so difficult to develop effective and non-toxic antiviral drugs?

A

1) Viruses enter cells using cellular receptors which may have other function
2)Viruses must replicate inside cells - obligate intracellular parasites
3)Viruses take over the host cell replicative machinery
4)Viruses have a high mutation rate - quasispecies
5)Antivirals must be selective in their toxicity
I.e exert their actions only on infected cells
6)Some viruses are able to remain in a latent state e.g Herpes, HPV
7)Some viruses are able to integrate their genetic material into host cells e.g HIV

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12
Q

Why is it difficult to make drugs that target fungi and parasites?

A

➝ They are eukaryotic organisms

➝ the targets for the drugs are similar to the host

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13
Q

What happens if you block viral enzymes?

A

➝ viral enzymes may be similar to host enzymes

➝ it may kill the cell

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14
Q

What happens if you block cellular virus receptors?

A

➝ It may have an important function and kill the cell

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15
Q

Describe the virus life cycle in 5 steps?

A

1) Virus attaches to the membrane
2) It enters via membrane fusion or endocytosis
3) When the virus is inside it uncoats and releases the genome
4) The genome replicates itself
5) the virus reassembles and escapes

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16
Q

What are the two ways that a virus can escape the cell?

A

➝ Virus reassembles either by budding through the membrane

➝ Viruses assemble inside the cell and escape by cell lysis

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17
Q

What are the 5 ways in which antivirals work?

A

➝ Prevent virus adsorption onto the host cell
➝ Preventing penetration
➝ Preventing viral nucleic acid replication (nucleoside analogues)
➝ Preventing maturation of virus
➝ Preventing virus release

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18
Q

What was amantadine used to treat?

A

➝Influenza A

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19
Q

What drugs inhibit nucleic acid polymerisation?

A

➝ Acyclovir
➝ Ganciclovir
➝ Ribavirin

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20
Q

How do acyclovir and ganciclovir work?

A

➝ They inhibit nucleic acid polymerisation by targeting reverse transcriptase or DNA polymerase

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21
Q

How does ribavirin work?

A

➝ analogue of GTP

➝ Compromises the genome replication of the virus

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22
Q

How does Zanamivir work?

A

➝ Blocks the release of the virus from the cell

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23
Q

What do protease inhibitors do?

A

➝ block particle maturation and assembly of the virus

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24
Q

What are 5 examples of viral targets?

A
➝ Thymidine kinase : HSV/VZV/CMV
➝ Protease of HIV
➝ Reverse transcriptase of HIV
➝ DNA polymerases
➝ Neuraminidase of influenza virus
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25
Q

What are 4 examples of human herpesviruses?

A

➝ HSV
➝ VZV
➝ CMV
➝ EBV

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26
Q

What are the methods of administration of Aciclovir?

A

➝ IV
➝ oral
➝ topical

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27
Q

What is Aciclovir used to treat?

A

➝ HIV/VZV treatment/prophylaxis

➝ CMV/EBV prophylaxis

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28
Q

What are the methods of administration of Ganciclovir and what is it used to treat?

A

➝ IV/oral

➝ CMV

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29
Q

What are the methods of administration of Foscarnet and what is it used to treat?

A

➝ IV/oral

➝ CMV

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30
Q

What is the method of administration of Cidofovir and what is it used to treat?

A

➝ IV

➝ CMV

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31
Q

Describe the mechanism of action of Aciclovir

A

1) When GTP is incorporated into DNA you need a 3’ OH group but the aciclovir does not have it
2) It is a chain terminator
3) ACV is first phosphorylated by a viral thymidine kinase (encoded by viral genome)
4) Once the ACV is phosphorylated it remains stable but then it is di and tri phosphorylated by cellular components
5) When it is triphosphorylated it becomes active
6) It then becomes a competitive inhibitor for viral DNA polymerase
7) It competes with normal GTP and stop the viral polymerase from synthesizing the viral genome

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32
Q

What is Aciclovir?

A

➝GTP analog that has lost some ribose sugars

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33
Q

What are the two reasons that Aciclovir has been given selective toxicity?

A

1) It is selectively activated only inside infected cells because it is activated by a viral thymidine kinase
2) Selective inhibition of DNA polymerase mainly targeting the viral DNA polymerase

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34
Q

Why does aciclovir not affect cellular phosphokinases?

A

➝ HSV thymidine kinase has 100x the affinity for aciclovir compared to cellular ones

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35
Q

Why does aciclovir not affect DNA polymerase?

A

➝ Aciclovir triphosphate has 30x the affinity for HSV DNA polymerase compared to cellular DNA polymerase

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36
Q

Why is aciclovir so effective?

A

➝ It is a highly polar compound

➝ Difficult to leave or enter cells

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37
Q

What is Aciclovir used for in the treatment of Herpes virus?

A

➝ Treatment of encephalitis
➝ Treatment of genital infection
➝ Suppressive therapy for recurrent genital herpes

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38
Q

What is Aciclovir used for in the treatment of VZV?

A

➝ Treatment of chickenpox
➝ Treatment of shingles
➝ prophylaxis of chicken pox

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39
Q

In what way is Aciclovir used in the treatment of EBV/CMV?

A

➝ Prophylaxis only

40
Q

What is Ganciclovir used for in the treatment of CMV?

A

➝ Reactivated infection of prophylaxis in organ transplant recipients
➝ Congenital infection in newborn
➝ Retinitis in immunosuppressed

41
Q

What does Ganciclovir inhibit?

A

➝ DNA polymerase

42
Q

What happens to Ganciclovir inside the cell?

A

➝ Di and tri phosphorylated within the cell by cellular components

43
Q

What kinase does CMV use?

A

➝ UL97 kinase

44
Q

What is the function of Foscarnet?

A

➝ Selectively inhibits viral DNA/RNA polymerases and reverse transcriptases

45
Q

What does Foscarnet bind to?

A

➝ Pyrophosphate binding site

➝ structural mimic

46
Q

What viruses is Foscarnet used for and in what cases?

A

➝ Herpes - normal use
➝ CMV infection in the immunocompromised
➝ Ganciclovir resistance (TK mutants)

47
Q

What type of a drug is Cidofovir?

A

➝ Chain terminator
➝ competes with dCTP
➝ monophosphate nucleotide analogue

48
Q

What does Cidofovir target?

A

➝ DNA polymerase

49
Q

What is Cidofovir used to treat in other viruses?

A

➝ Retinitis in HIV

➝ CMV but is nephrotoxic

50
Q

What are Foscarnet and Cidofovir usually used for?

A

➝ Herpes

51
Q

What are the two mechanisms of resistance to antivirals in Herpes?

A

➝ Thymidine kinase mutants

➝ DNA polymerase mutants

52
Q

What happens if there is a mutation in the Herpes virus DNA polymerase?

A

➝ All drugs are rendered less effective

53
Q

What happens if there is a mutation in the Herpes virus Thymidine Kinase?

A

➝ Drugs not needing phosphorylation are still effective

54
Q

Describe the life cycle of HIV in 7 steps?

A

1) Attachment with binding of viral gp120 via CD4 and CCRX
2) Reverse transcription of RNA into dsDNA
3) Integration into host chromosome of proviral DNA
4) Transcription of viral genes
5) Translation of viral mRNA into viral proteins
6) Virus assembly and release by budding
7) Maturation

55
Q

What are the 4 classes of anti HIV drugs?

A

➝ Anti reverse transcriptase inhibitors
➝Protease inhibitors
➝ Integrase inhbitors
➝ Fusion inhibitors

56
Q

What are the two subclasses of reverse transcriptase inhibitors?

A

➝ Nukes : nucleoside/nucleotide RT inhibitors

➝ Non-nukes : non-nucleoside RT inhibitors (allosteric)

57
Q

What does the POL gene in HIV encode?

A

➝ protease
➝ reverse transcriptase and integrase
➝ 3’ end encoding for integrase (polynucleotidyl transferase)

58
Q

What kind of drugs are fusion inhibitors?

A

➝ biomimetic lipopeptide

59
Q

What is HAART?

A

➝ combinations of drugs to avoid resistance

60
Q

What is ziovudine (AZT)?

A

➝ synthetic analogue of the nucleoside thymidine

➝ acts like a chain terminator

61
Q

How does ziovudine (AZT) work?

A

➝ When converted to a tri nucleotide by cell enzymes it blocks reverse transcriptase by:
➝ competing for the natural nucleotide substrate dTTP
➝ Incorporation into DNA causing chain termination

62
Q

What kind of drugs are non-nukes?

A

➝ Non-competitive inhibitor of reverse transcriptase

63
Q

Why are non nukes synergistic with nukes?

A

➝ They have different mechanisms

64
Q

What is the treatment for post exposure prophylaxis HIV?

A

➝ 2 nukes + integrase inhibitors

➝ within 72 hours post exposure - take for 28 days

65
Q

What is the treatment for pre exposure prophylaxis HIV and what is this called ?

A
➝ 2 x nukes (NRTIs)  (truvada) 
➝ two tablets 2-24 hours before sex 
➝ one 24 hours after sex 
➝ a further tablet 48 hours after sex 
➝ on demand or event based dosing
66
Q

What the combination of NRTIs used for pre exposure prophylaxis?

A

➝ emitricitabine (guanosine analogue)

➝ Tenofovir (adenosine analogue)

67
Q

What makes it more likely for resistance to occur?

A

➝ High mutation rate and high viral load

➝ use of single agens

68
Q

Why do you use a combination of antivirals in HIV?

A

➝The error rate in copying viral genome by reverse transcriptase enzyme is 1 base per 10 ^4-5 incorporation
➝lacks proofreading capacity
➝So for HIV with 10 ^9-10 viruses produced every day all possible variants would be produced

69
Q

What does HIV form within an individual patient?

A

➝ A quasispecies

70
Q

What three drugs are used to treat the influenza virus?

A

➝ Amantadine
➝ Zanamivir
➝ Oseltamivir

71
Q

What are the methods of administration of Zanamivir and Oseltamivir (tamiflu)?

A

➝ Zanamivir - inhaled or IV

➝ Oseltamivir - oral

72
Q

How do Zanamivir and Oseltamivir work?

A

➝ Inhibit the virus release from infected cells via the inhibition of neuraminidase

73
Q

How do haemagglutinin and Neuraminidase help with the budding process?

A

➝Hemagglutinin allows the receptor interaction
➝The neuraminidase is an enzyme that cleaves off sialic acid from the receptor associated with the cell surface
➝When the virus buds out of the cell it is still attached to the sialic acid receptor
➝The neuraminidase cleaves the process and allows the virus to be released

74
Q

What happens if you use a neuraminidase inhibitor?

A

➝ It blocks the ability of the neuraminidase to cleave the sialic acid so the virus can’t be released from the infected cell
➝ the cell will die because it gets filled with virus particles

75
Q

What mutation occurred with tamiflu?

A

➝ Point mutation H275Y

76
Q

How does amantadine work?

A

➝ Inhibits virus uncoating by blocking the influenza encoded M2 protein when inside cells and assembly of haemagglutinin

77
Q

How are mutations selected in influenza?

A

➝ selected from quasispecies during treatment

78
Q

What are influenza mutations still sensitive to?

A

➝ Zanamivir

79
Q

What is the post exposure prophylaxis treatment for Hep B?

A

➝ Specific hep B immunoglobulin (passive immunity) + vaccination within 48 hours
➝ Antivirals NRTIs

80
Q

What is the post exposure prophylaxis treatment for Hep C?

A

➝Interferon gamma + ribavirin (anti-viral) for 6 months within the first 2 months of exposure

81
Q

What is the cure rate for post exposure prophylaxis in Hep C?

A

➝ 90%

82
Q

How is Hep C transmitted?

A

➝ via blood

➝ mother to baby

83
Q

What % of drug users are Hep C positive?

A

➝ 20%

84
Q

What is a major cause of chronic liver disease?

A

➝ Hep C

85
Q

How many people are infected worldwide with Hep C?

A

➝ 170 million

86
Q

What are the occupational risk groups for Hep C?

A

➝ Healthcare workers

87
Q

What is the needle stick risk for Hep C?

A

➝ 3% to sero-conversion

➝ chronic carriage 85%

88
Q

What is the incubation period for Hep C?

A

➝ 1-6 months

89
Q

What family is Hep C from?

A

➝ Flaviviridae

90
Q

What kind of a drug is Ribavarin?

A

➝ nucleoside analogue

91
Q

How does Ribavirin work?

A

➝ Blocks RNA synthesis by inhibiting inosine 5’ monophosphate dehydrogenase
➝ this blocks the conversion of IMP to XMP (xanthosine 5’ monophosphate)
➝ this stops GTP synthesis and consequently RNA synthesis
➝ this stops GTP synthesis and consequently RNA synthesis

92
Q

What is Ribavirin used to treat?

A

➝ RSV and Hep C in combination with pegylated interferon

93
Q

What is the aim of direct antivirals in the treatment of HepC?

A

➝ Shorten the length of therapy
➝ minimize side effects
➝ target the virus itself
➝ improved sustained virologic response

94
Q

How do direct acting anti virals (DAA’s) work?

A

➝ It binds fuses and uncoats
➝The NS3/4 protease inhibitors blocks the protein translation and poly processing so the virus can’t make its own proteins
➝There can also be inhibitors of Hep C polymerases
➝You can block the enzymes that are responsible for replication, budding and release

95
Q

What are the 4 major HCV induced enzymes?

A

➝ NS2-3
➝ NS3-4A proteases
➝ NS3 helicase
➝ NS5B RNA dependent RNA polymerase

96
Q

What 6 viruses do not have effective therapies?

A
➝ Rabies
➝ Dengue
➝ Common cold
➝ Ebola 
➝ HPV
➝ Arboviruses