Liver and friends Flashcards
what are xenobiotics?
foreign chemical substance not normally found/produced in the body - can’t be used for energy requirements
can be absorbed across lungs, skin or ingested
what are drugs?
xenobiotics
how are xenobiotics excreted?
in bile, urine, sweat, breath
what are the characteristics of pharmacologically active compounds?
lipophilic, non-ionised at pH 7.4, bound to plasma proteins to be transported in blood
what is a lipophilic compound?
able to pass through plasma membranes to reach metabolising enzymes
what is a microsome?
a small particle consisting of a piece of endoplasmic reticulum to which ribosomes are attached
where are microsomal enzymes found?
smooth endoplasmic reticulum
mostly found in liver hepatocytes, but also in kidneys and lungs
what are examples of microsomal enzymes?
cytochrome P450, flavin monooxygenase, UDP, glucuronosyltransferase
what types of reactions are microsomal enzymes involved in? what do they do?
mainly phase I, also phase II
oxidative, reductive, hydrolytic
phase I: biotransform substances (one chemical to another)
phase II: glucuronidation
what is glucuronidation?
addition of glucuronic acid to a substance
what can activity of microsomal enzymes be induced or inhibited by?
drugs, food, age, bacteria, alcohol
where are non-microsomal enzymes located?
cytoplasm and mitochondria of hepatocytes in liver, in other tissue too
what reactions are non-microsomal enzymes involved in?
non specific - both phase I and II
all conjugation reactions except glucuronidation
what are examples of non-microsomal enzymes?
protein oxidases, esterases, amidases, conjugases, alcohol dehydrogenase, aldehyde dehydrogenase
what is the aim of drug metabolism? where does it occur?
to make drugs more polar so they can’t get across membranes and are easily excreted
liver
where are most drugs excreted? what is an exception?
kidneys
lipophilic drugs aren’t effectively removed as they’re passively absorbed, due to them diffusing through cell membranes easily
what is a phase I reaction?
aim: make drug more hydrophilic/polar so it can be excreted by the kidneys -unmasks/inserts polar functional group (OH, SH, NH2)
introduce/expose hydroxyl groups/other reactive sites that can be used for conjugation reactions (phase II)
what are the types of reactions in phase I reactions?
non-synthetic catabolic, oxidation, reduction, hydrolysis
are hydrophilic molecules usually involved in phase I reactions? why/why not?
no - they don’t reach metabolising enzymes as they’re excreted easily
what is involved in oxidation?
hydroxylation (add OH), dealkylation (remove CH side chains), deamination (remove NH), hydrogen removal
what is involved in reduction?
add hydrogen (saturate unsaturated bonds)
what is involved in hydrolysis?
split amide and ester bonds
what is functionalism?
introduces reactive group to drug
includes adding/exposing OH, SH, NH2, COOH
product of reaction is usually more reactive
small increase in hydrophilicity
what are phase I reactions mainly catalysed by?
p450 enzymes
what are cytochrome P450 enzymes?
type of microsomal enzyme
involved in phase I reactions
uses heme group (Fe2+) to oxidise substances
products are more water soluble
naming enzymes in cytochrome P450 family
prefix CYP
1st number = family enzyme belongs to
letter = subfamily
2nd number = individual genes involved
what are some important P450 isoenzymes?
CYP 1A2 CYP 2C9 CYP 2C19 CYP 2D6 CYP 2E1 CYP 3A4
what is involved in the overall phase I reaction?
cytochrome P450 reductase transfers electrons from NADPH to CYP 450
contains flavoprotein which consists of flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN)
what is FAD? what does it do?
flavin adenine dinucleotide
accepts electrons from NADPH
what is FMN? what does it do?
flavin mononucleotide
electron donor to CYPs
what is the equation for the overall phase I reaction?
NADPH + H+ + O2 + RH -> NADP+ + H2O + R-OH
what is drug metabolism?
metabolic breakdown of drugs by living organisms, usually through specialised enzymatic systems
what is xenobiotic metabolism?
set of metabolic pathways that modify the chemical structure of xenobiotics (foreign to an organism’s normal biochemistry)
what can phase I reactions do?
inactivate drugs, further activate them, activate drug from pro-drug, make a drug into a reactive intermediate (could be carcinogenic or toxic)
what are examples of synthetic anabolic reactions?
glucuronidation, sulfation, glutathione conjunction, amino acid conjunction, acetylation, methylation, water conjunction
what is the donor compound in glucuronidation?
UDPGA
what is the donor compound in acetylation?
acetyl CoA
what is the donor compound in methylation?
S-adenodyl methionine
what is a conjugation reaction? what is it catalysed? what does it do?
attachment of substituent groups (endogenous molecules)
usually inactive products
catalysed by transferases
significantly increases hydrophilicity for renal excretion
mainly in liver, or other tissues e.g. lungs/kidneys
what is a glucuronidation reaction?
essentially adding a glucuronic acid group (glucuronide) to drug to make it more hydrophilic
what is the enzyme involved in glucuronidation?
glucuronosyltransferase (uridine 5’-diphosphoglucuronosyltransferase) (UGT) - microsomal enzyme, used in phase II reactions, catalyses reaction
what is required to conjugate glucuronic acid?
uridine diphosphoglucuronic acid (UDPGA) - coenzyme/donor compound
what does the glucuronidation reaction form?
covalent bonds
uridine diphosphate + drug-glucuronide (more hydrophilic)
what is aspirin?
analgesic, NSAID, antiplatelet, prodrug, irreversibly inhibits cyclooxygenase (COX)
role of aspirin in phase I metabolism
prodrug - activated upon metabolism
hydrolysis reaction
aspirin + H2O -> salicyclic acid + ethanoic acid
role of aspirin in phase II metabolism
conjugated with glycine or glucuronic acid
forms range of ionised metabolite
what is paracetamol?
acetaminophen
analgesic, antipyretic agent
metabolism of paracetamol
predominantly metabolised via a phase II reaction - conjugated with glucuronic acid and sulphate
toxicity of paracetamol
if stores of glucuronic acid and sulfate are running low, paracetamol undergoes phase I metabolism via oxidation to produce toxic NAPQI
removed by conjugation with glutathione
overdose - stores of glutathione can run low -> toxicity
what is paracetamol toxicity treated with?
N-Acetyl Cysteine
what is the overall reaction of alcohol metabolism?
ethanol -(ADH)-> acetaldehyde -(ALDH)-> acetate -> CO2 + H2O
what is ADH?
alcohol dehydrogenase
what is ALDH?
aldehyde dehydrogenase
what are effects of acetaldehyde?
carcinogenic - indications of high levels are facial flushing, rapid heartbeat, nausea
what are the uses of iron?
haemoglobin, myoglobin, bone marrow
what are sources of iron?
meat, liver, shell fish, egg yolk, beans, nuts, cereals
where does homeostatic control of iron balance occur? what is it regulated by?
intestinal epithelium (duodenum), actively absorbs iron from ingested foods
negative feedback - depending on body’s iron balance
how much of ingested iron is absorbed?
about 10%
what happens to iron ions once actively transported into duodenal intestinal epithelial cells?
incorporated into ferritin (protein-iron complex) that acts as an intracellular store for iron
most is released back into intestinal lumen (bound to ferritin) - tips of villi disintegrate. iron is excreted into faces
what happens when the body store of iron is enough?
increased conc of free iron in plasma and intestinal epithelial cells leads to increased transcription of the gene encoding for ferritin -> increased synthesis
-> increased binding of Fe in cells and reduction in amount of iron released into blood
what happens when body stores of iron are low?
production of intestinal ferritin decreases -> decreased amount of iron bound to ferritin -> increasing unbound iron released into blood
what is iron bound to in the blood?
plasma protein transferrin
where does transferrin take the iron?
to bone marrow to be incorporated into new erythrocytes
how is iron stored?
once in blood, there are v little means of excreting it - accumulates in tissues (most in liver in liver ferritin within Kupffer cells)
50% in haemoglobin
25% in heme containing proteins (mainly cytochromes)
25% in liver ferritin
what proteins does the liver produce?
plasma proteins, clotting factors and complement factors
what is albumin?
most abundant plasma protein
what are the functions of albumin?
binding and transport of large hydrophobic compounds e.g. bilirubin, FAs, hormones, drugs
maintenance of colloid osmotic pressure
what is colloid osmotic pressure?
effective osmotic pressure across blood vessels that are permeable to electrolytes but not large molecules
how does albumin maintain osmotic pressure?
its presence means the water conc. of the blood plasma is slightly lower than that of the interstitial fluid -> net flow of water out of the interstitial fluid, into the blood plasma
what do opposing forces do? what are they called?
act to move fluid across the capillary wall
Starling Forces
what are the Starling Forces? what do each of them do?
capillary hydrostatic pressure (favouring fluid movement out of capillary)
interstitial hydrostatic pressure (favouring fluid movement into the capillary)
osmotic force due to plasma protein conc. (favouring fluid movement into the capillary)
osmotic force due to interstitial fluid protein conc. (favouring fluid movement out of capillary)
what are forces at the arterial ends of the capillaries?
hydrostatic pressure from capillary = 38 mmHg > interstitial fluid HP (0) as fluid is quickly picked up by lymphatics
interstitial fluid protein conc. = 3mmHg, osmotic pressure due to plasma proteins = 28mmHg
net outward pressure exceeds net inward pressure -> bulk filtration of fluid out of capillaries
what are forces at the venous ends of the capillaries?
only difference in Starling forces is the capillary hydrostatic pressure - decreased to 15mmHg due to resistance
others are same
net inward pressure exceeds net outward pressure -> bulk absorption into capillaries
what is hypoalbuminea?
liver failure -> reduction in albumin in blood -> decreased capillary oncotic pressure -> accumulation of water in interstitial fluid -> oedema
apart from liver failure, why may albumin also decrease?
nephrotic syndrome, haemorrhage, gut loss, burns
what is nephrotic syndrome?
increased glomerular permeability, allowing proteins to filter through BM -> loss of up to several grams of protein a day
what is gut loss?
rare syndrome - wall of gut is unusually permeable to large molecules -> albumin loss
how can burns lead to albumin decrease?
extensive tissue damage to capillaries -> loss of proteins through walls of capillaries
what are globulins? what do they transport?
antibody functions
most are gamma-globulins (not made in liver), some are alpha/beta globulins (made in liver)
lipids by lipoproteins
iron by transferrin
copper by caeruloplasmin
liver production of clotting factors
produces all except calcium (IV) and vWF (VIII)
bile salts - essential for vit K absorption
vit K essential for synthesis of clotting factors 10,9,7,2
what are complement factors?
plasma protein which stick to pathogens
recognised by neutrophils - mark pathogens to kill
what is protein turnover?
continuous degradation and resynthesis of cellular proteins
when does rate of protein turnover increase?
tissues are undergoing structural rearrangement e.g. damage due to trauma, uterine tissue in pregnancy and skeletal muscle during starvation
severe burns - attempts at remodelling, significant amounts of protein lost in exudate
what are the primary methods of protein breakdown?
lysosomal and ubiquitin-proteasome pathway
what is the lysosomal pathway of protein breakdown?
carried out in reticulo-endothelial system of liver
sinusoidal endothelial cells remove soluble proteins and fragments from blood through fenestrations (sieve plates) on luminal surface . in liver, proteins are fused into lysosomes containing lysozyme - hydrolytic enzyme that breaks it down into amino acids
Kupffer cells (resident macrophages) phagocytose particulate matter, packaging them into phagosomes containing hydrolytic enzymes
what do sinusoidal endothelial cells do in the lysosomal pathway? what proteins do they remove?
remove soluble proteins and fragments from blood through fenestrations (sieve plates) on luminal surface
fibrin, fibrin degradation products, collagen, IgG complexes
proteins then fused into lysosomes in liver
where does the ubiquitin-proteasome pathway occur?
in cytoplasm of cells
what proteins does the ubiquitin-proteasome pathway degrade?
those defective due to incorrect amino acid sequences
damage to normal function (denatured)
what does the rate of degradation depend upon in the ubiquitin-proteasome pathway?
denatured (unfolded) protein is more readily digested than a protein with an intact conformation
what is the process of the ubiquitin-proteasome pathway?
proteins targeted for degradation by attachment of small peptide ubiquitin
directs protein to protein complex (proteasome) - unfolds the protein and breaks it down into small peptides
where does amino acid degradation and catabolism occur?
in hepatocytes of liver
what happens to amino acids not required as building blocks for protein synthesis?
must undergo degradation to specific compounds
what is catabolism?
break down of complex substances to simpler ones accompanied by release of energy
what does amino acid catabolism require?
alpha amino group (nitrogen containing) to be removed
what does amino acid catabolism produce?
nitrogen - incorporated into other compounds or excreted
carbon skeleton - metabolised and used in Kreb’s cycle
what are the 2 main catabolism processes?
oxidative deamination and transamination
what is the reaction of oxidative deamination?
liberation of amino group as free ammonia
amine group from amino acid is replaced by an oxygen from water to form an alpha-keto acid
coenzyme involved, in products is bound to 2H from water
what is the overall equation for oxidative deamination?
amino acid + water + coenzyme -> alpha-keto acid + ammonia + coenzyme-2H
what is the only amino acid that undergoes rapid oxidative deamination?
glutamate
what happens to the alpha-keto acid formed from oxidative deamination?
used in Kreb’s cycle for use in glucose production - gluconeogenesis
what are the coenzymes/enzymes involved in oxidative deamination?
coenzyme: NAD+ (forwards) and NADPH (backwards)
enzyme: glutamate dehydrogenase
what happens to the ammonium produced in oxidative deamination?
quickly dissociates to form ammonia, which can be converted to urea via the urea cycle as it’s toxic
what does oxidative deamination depend on?
readily reversible
depends on concentrations of glutamate, alpha-ketoglutarate, ammonia
what is the most abundant amino acid in the body?
glutamate
what happens when there is excess ammonia?
it can easily cross the BBB and react with alpha-ketoglutarate -> decrease in ATP. dangerous
what is transamination?
transfer of an alpha-amino group from an amino acid to a keto-acid to form an alpha-keto-acid
what happens if the amino acid alanine is transaminated?
amino group is transferred to alpha-ketoglutarate, forming pyruvate (used in Krebs cycle for gluconeogenesis) and glutamate (oxidatively deaminated)
what is the enzyme involved in transamination?
aminotransferase - found in cytosol of mitochondria through body, esp. in kidneys and liver
specific to one or few amino group donors
alanine - alanine aminotransferase (ALT)
what is nitrogen balance?
a measure of the equilibrium of protein turnover
what is anabolic/catabolic nitrogen balance?
anabolic - positive balance, net gain in amino acids
catabolic - negative balance, net loss in amino acids
what are the essential amino acids?
histidine, isoleucine, leucine, lycine, methionine, phenylalanine, threonine, tryptophan, valine
body cannot synthesise them
what are the conditionally non-essential amino acids?
arginine, asparagine, glutamine, glycine, proline, serine, tyrosine
what are the non-essential amino acids?
alanine, asparatate, cysteine, glutamate
what is the most common cause of an anabolic nitrogen balance?
intake > loss
pregnancy
what are the recommended daily intakes of amino acids?
- 8g/kg (normal men and women)
- 3g/kg (pregnant women)
- 4g/kg (first few months of life)
what are the causes of negative nitrogen balance?
intake < loss
malnutrition, multiple trauma/extensive trauma where there’s lots of tissue damage
action of ALT in muscles
utilises pyruvate from glycolysis as an alpha-keto acid for transamination
converts glutamate to a-ketoglutarate
produces alanine and alphaketoglutarate (krebs cycle to produce glucose via gluconeogenesis)
what happens to alanine in the liver?
travels via blood to liver
converted back to pyruvate by transamination
what happens to pyruvate produced from alanine in the liver?
source of carbons for glucose production via gluconeogenesis
enters blood as glucose, used in muscles to produce pyruvate via glycolysis - used again to remove excess ammonia (NH3)
what is the aim of the glucose-alanine cycle?
to remove excess ammonia/ammonium from amino acids from muscle protein
what happens to the glutamate produced from alanine in the liver via reverse transamination?
converted to ammonium via oxidative deamination, producing ammonium which rapidly dissociates into ammonia
ammonia can be converted to urea via urea cycle
where are the enzymes involved in the urea cycle found?
in liver in the mitochondria/cytosol of hepatocytes
what is the process of the urea cycle?
arginine (from diet/protein breakdown) is cleaved by arginase to form urea and ornithine
ammonia and CO2 is added on the ornithine to form citrulline
another molecule of ammonia is added to citrulline to regenerate arginine and let the cycle go around again
what is consumed by one turn of the urea cycle?
3 ATP equivalents
4 high energy nucleotides (PO4-)
what is/are the compound(s) produced by the urea cycle?
urea
arginine, ornithine and citrulline are recycled
deficiencies/absences of enzymes involved in urea cycle
arginase
deficiencies: higher levels of ammonia in blood, neurotoxicity
absences: incompatible with life
enzymes involved in the urea cycle
N-acetylglutamate synthase (NAGS) carbamylphosphate synthetase (CPS I) ornithine transcarbamylase (OTC) argininosuccinate synthetase (ASS) argininosuccinate lyase (ASL) arginase
neurotoxicity due to high ammonia levels
ammonia can cross BBB very easily
converted to glutamate by glutamate dehydrogenase
depletion in alpha-ketoglutarate
as alpha-ketoglutarate falls, so does oxaloacetate -> krebs cycle stopping
irreparable cell damage and neural cell death
what is the absorptive state?
ingested nutrients are absorbed from GI tract into blood
proportion of nutrients are catabolised and used
remainder converted and stored for future use
what happens during the absorptive state?
glucose used to generate ATP
amino acids converted to proteins
glycerol and FAs converted to lipids
glucose converted to glycogen
what is the post-absorptive state?
nutrients no longer absorbed in GI tract
nutrient stores must supply energy requirements of body
what is glucose regulation in the post-absorptive state?
glucose no longer absorbed from GI tract
why is it essential to maintain the plasma glucose concentration in the post-absorptive state?
CNS always using it for fuel
what are the main sources of glucose in the post-absorptive state?
glycogenolysis, lipolysis, protein
what is glycogenolysis?
hydrolysis of glycogen to monomers of glucose-6-phosphate
where does glycogenolysis occur?
liver and skeletal muscles
what happens in hepatic glycogenolysis?
in liver, glucose-6-phosphate enzymatically converted to glucose, which enters the blood
begins within seconds of stimulus (e.g. sympathetic nervous activation)
how long can glucose from the liver supply body requirements?
several hours