Lecture 8 - DNA processes Flashcards
T/F: every cell has DNA as its blueprint
true
what type of macromolecule is DNA?
nucleic acid
what are the monomers of DNA?
nucleotides
What are the 3 components of a nucleotide? Out of these 3, which component is different between the 4 nucleotides that make up DNA?
The 3 components of a nucleotide are sugar, phosphate, and a nitrogenous base. Out of these 3, the component that is different between the 4 nucleotides that make up DNA is the nitrogenous base. In DNA they are A, G, C, and T. In RNA they are A, G, C, and U.
What type of bond holds 1 DNA strand together? Which of the 3 components of the nucleotide are involved in this bond?
A phosphodiester (or covalent) bond holds 1 DNA strand together. The phosphate group and the sugar in this bond.
What type of bond holds 2 DNA strands to each other? Which of the 3 components of the nucleotide are involved in this bond?
The type of bond that holds 2 DNA strands together is a hydrogen bond. Of the 3 components of the nucleotide, the nitrogenous base pairs are involved in this bond.
Which nucleotides are complementary to each other (bind to each other) in DNA?
A=T
G=C
How is DNA different from RNA?
- DNA’s sugar is deoxyribose, while RNA’s sugar is ribose.
- DNA’s nitrogenous bases are A, T, G, and C, while - RNA’s nitrogenous bases are A, U, G, and C.
- DNA is double-stranded, while RNA is single-stranded.
- RNA is shorter than DNA.
- RNA is transient, and DNA is permanent
Both e.coli and humans have DNA, with their monomers as nucleotides. What are different, however?
The sequence of the letters (the bases/nucleotides) are different.
how many bases does e.coli have?
5 million
how many bases do humans have?
3.2 billion
DNA has what two strands?
two polynucleotide strands
what does DNA replication start and end with?
DNA replication starts with DNA and ends with DNA; it is just replicated
what does gene expression contain?
transcription and translation
what is the central dogma of life?
gene expression; DNA (gene) to RNA (codons) to protein (amino acids)
what is a gene?
a segment of DNA that encodes a particular product, which is usually a protein
what are bases?
nucleotides
what is dna replication?
it duplicates the DNA molecule so its encoded information can be passed on to the next generation
what are DNA’s nucleotide subunits?
-Sugar (deoxyribose) and
-Phosphate (negatively charged) backbone
-Nitrogenous bases (A,T,G,C)
is DNA a double-stranded or single-stranded helix?
double stranded
what are the complementary strands/base pair rules of DNA?
A=T
G=C
are DNA strands parallel or antiparallel? why is this important?
antiparallel; this is important because the Phosphate is connected to carbon 5 (5 ‘ prime end) and the base is connected to Carbon 3’.
One strand is synthesized in the direction in which DNA unwinds and it can be synthesized continuously. The other strand is synthesized in the opposite direction so has to be synthesized discontinuously. As more and more DNA unwinds, new primers have to be laid down to start synthesis.
is DNA supercoiled?
yes
what are RNA’s nucleotide subunits?
-Sugar (ribose) and
-Phosphate backbone
-Nitrogenous bases (A,U,G,C)
is RNA double or single-stranded?
single-stranded
is RNA shorter or longer than DNA?
RNA is always shorter than DNA
what are the three subtypes of RNA?
tRNA - transfer RNA
mRNA - messenger RNA
rRNA - ribosomal RNA
when does DNA replication occur in regard to binary fission?
it happens before binary fission
what is the starting signal for DNA replication?
Origin of replication (OriR)
In what direction does DNA replication happen?
bidirectional
DNA replication is semiconservative - what does that mean?
it uses the old DNA strand as the template for the new DNA strand; every new DNA molecule has 1 old and 1 new strand
what are the steps of DNA replication including the enzymes?
- DNA gyrase uncoils/relaxes the supercoiled DNA.
- DNA helicase separates the 2 DNA strands.
- DNA polymerase builds and adds nucleotides at the 3’ end. It also proofreads.
- RNA primers add spots to add bases. Primers are made by Primase.
- DNA helicase continues to unzip the strands, while DNA polymerase continues to add nucleotides.
- DNA ligase binds fragments together in the lagging strand.
- This process stops at the terminating site.
how many RNA primers do the leading strand use?
only uses one RNA primer
is the leading strand continuous or discontinuous replication?
continuous
how many RNA primers do the lagging strand use?
many RNA primers
is the lagging strand continuous or discontinuous replication?
discontinuous
how do DNA polymerase and DNA ligase play a part in the lagging strand?
DNA polymerase adds nucleotides and replaces all RNA primers with DNA nucleotides. DNA ligase binds fragments together.
what is transcription?
DNA - RNA
the synthesis of mRNA from DNA
what direction does transcription go?
unidirectional
which DNA strand is used for the template for RNA?
either one of the DNA strands can be used as the template for RNA
is RNA permanent or transient?
transient
what are the base pair rules for RNA?
A=U
G=C
how does transcription start?
it begins when the RNA polymerase binds to the promoter, on either on of the strands of the DNA
what are the steps of transcription?
- Starts with the RNA polymerase binding onto the promoter, on either of the strands of the DNA.
- Transcription can now begin.
- RNA polymerase moves across the template strand of the DNA, synthesizing the complementary single-stranded messenger RNA molecule.
- Synthesis goes from the 5’ end to the 3’ end.
- When RNA polymerase reaches the transcription terminator sequence, the mRNA and the RNA polymerase stop and dissociates from the DNA.
what is translation?
RNA - protein
mRNA has 3-letter codons that code for what 3 things?
-Amino acids
-Start codons
-Stop codons
how many codons are there for 20 amino acids?
61 codons for 20 amino acids
what is the start codon RNA and amino acid?
Codon: AUG
Amino acid: Methionine (f-Met)
what are the 3 stop codons?
UAA
UAG
UGA
what 3 things does translation need to occur?
-mRNA (the substrate)
-Ribosome (both units to make proteins)
-tRNA with amino acids (the interpreter)
what exactly is the tRNA?
it is connected to the anticodons on one side, and amino acids on the other side
what is the purpose of the anticodon on tRNA?
it recognizes the codon on the mRNA
what are the 3 steps of translation?
-Initiation
-Elongation
-Termination
what happens during initiation in translation?
-The ribosome subunits join the mRNA.
-The tRNA with f-Met enters the P-site (peptidyl site) and binds to the start codon (AUG).
-The second tRNA with its amino acid enters the A-site (acceptor site).
what happens during elongation in translation?
-The ribosome moves to the next codon (which is the next 3 amino acids) along the mRNA.
-A new tRNA with its amino acid enters the A-site.
-The empty tRNA exits via the E-site (exit site).
-The polypeptide chain grows in length.
what happens during termination in translation?
-The stop codon terminates the process.
-Enzymes will free the new polypeptide.
-The ribosomes and mRNA break apart and can be reused.
-The protein product can be modified (ex: folded into a functional protein).
is there a tRNA molecule that recognizes a stop codon in termination?
NO
how are the amino acids linked in translation
the amino acids are linked by peptide bonds
summary:
what are the substrates, end products, start signal, stop signal, and enzymes/molecules needed in replication, transcription, and translation?
-Replication:
1 DNA, 2 DNA, OriR, terminating site, DNA gyrase, DNA helicase, DNA primase, DNA polymerase, and DNA ligase.
-Transcription:
DNA, RNA (or mRNA), DNA promoter sequence, DNA terminator sequence, RNA polymerase.
-Translation:
mRNA, protein, start codon, stop codon, amino acids, ribosomal subunits, mRNA, tRNA.